CX077888

Overview
NameCX077888
Unique NameCX077888
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length483
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX077888 vs. ExPASy Swiss-Prot
Match: NDUA8_PONPY (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Pongo pygmaeus GN=NDUFA8 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.517e-12
Identity = 31/89 (34.83%), Postives = 53/89 (59.55%), Query Frame = -2 
Query:  129 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHTNE-FDFCRKEQQAFEK 392
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y   + F  CRK+Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109
[Close]
BLAST of CX077888 vs. ExPASy Swiss-Prot
Match: NDUA8_PONAB (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Pongo abelii GN=NDUFA8 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.517e-12
Identity = 31/89 (34.83%), Postives = 53/89 (59.55%), Query Frame = -2 
Query:  129 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHTNE-FDFCRKEQQAFEK 392
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y   + F  CRK+Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109
[Close]
BLAST of CX077888 vs. ExPASy Swiss-Prot
Match: NDUA8_PANTR (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Pan troglodytes GN=NDUFA8 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.517e-12
Identity = 31/89 (34.83%), Postives = 53/89 (59.55%), Query Frame = -2 
Query:  129 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHTNE-FDFCRKEQQAFEK 392
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y   + F  CRK+Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109
[Close]
BLAST of CX077888 vs. ExPASy Swiss-Prot
Match: NDUA8_HUMAN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Homo sapiens GN=NDUFA8 PE=1 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.517e-12
Identity = 31/89 (34.83%), Postives = 53/89 (59.55%), Query Frame = -2 
Query:  129 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHTNE-FDFCRKEQQAFEK 392
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y   + F  CRK+Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109
[Close]
BLAST of CX077888 vs. ExPASy Swiss-Prot
Match: NDUA8_GORGO (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Gorilla gorilla gorilla GN=NDUFA8 PE=2 SV=3)

HSP 1 Score: 72.0182 bits (175), Expect = 1.517e-12
Identity = 31/89 (34.83%), Postives = 53/89 (59.55%), Query Frame = -2 
Query:  129 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHTNE-FDFCRKEQQAFEK 392
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y   + F  CRK+Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNKCALDFFRQIKRHCAEPFTEYWTCIDYTGQQLFRHCRKQQAKFDE 109
[Close]
BLAST of CX077888 vs. ExPASy Swiss-Prot
Match: NDUA8_MOUSE (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Mus musculus GN=Ndufa8 PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 1.284e-11
Identity = 31/89 (34.83%), Postives = 50/89 (56.18%), Query Frame = -2 
Query:  129 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHTNE-FDFCRKEQQAFEK 392
            SSAVL A++ H G +C   N EF+ C+ ++ +P +CL +G+ V  C L   + +   C +   EY  CL Y   + F  CR++Q  F++
Sbjct:   21 SSAVLKAAAHHYGAQCDKTNKEFMLCRWEEKDPRRCLKEGKLVNGCALNFFRQIKSHCAEPFTEYWTCLDYSNMQLFRHCRQQQAKFDQ 109
[Close]
BLAST of CX077888 vs. ExPASy Swiss-Prot
Match: NDUA8_BOVIN (NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 8 OS=Bos taurus GN=NDUFA8 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 1.677e-11
Identity = 30/89 (33.71%), Postives = 53/89 (59.55%), Query Frame = -2 
Query:  129 SSAVLTASSKHIGLRCQHENVEFLKCKQKDPNPEKCLDKGRQVTRCVLGLLKDLHQKCTKEMDEYVGCLYYHTNE-FDFCRKEQQAFEK 392
            SS+VL A++ H G +C   N EF+ C+ ++ +P +CL++G+ V +C L   + + + C +   EY  C+ Y   + F  CRK+Q  F++
Sbjct:   21 SSSVLKAAAHHYGAQCDKPNKEFMLCRWEEKDPRRCLEEGKLVNQCALEFFRQIKRHCAEPFTEYWTCIDYSGLQLFRRCRKQQAQFDE 109
The following BLAST results are available for this feature:
BLAST of CX077888 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
NDUA8_PONPY1.517e-1234.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_PONAB1.517e-1234.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_PANTR1.517e-1234.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_HUMAN1.517e-1234.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_GORGO1.517e-1234.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_MOUSE1.284e-1134.83NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
NDUA8_BOVIN1.677e-1133.71NADH dehydrogenase [ubiquinone] 1 alpha subcomplex... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_5F05_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5F05-K9-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077888 ID=CX077888; Name=CX077888; organism=Citrus sinensis; type=EST; length=483bp
CTCAAAGTGAAAGGGAAATTCCATAAACAAATGTTCGCAAGAATAGTATT
TGCTCACTGCAAAGTGTCCTAACTTATTCTGGGCATCAAGTTACAGGCAT
CATTTGCCAATCAGTTCAGAGGGCATGTTTTCTCAAATGCTTGCTGCTCT
TTGCGACAAAAATCAAACTCATTTGTATGGTAATACAAGCAACCAACATA
TTCATCCATCTCCTTCGTGCACTTTTGATGAAGATCTTTTAGCAAGCCAA
GGACGCAGCGAGTGACTTGGCGACCTTTATCGAGGCATTTTTCGGGATTG
GGATCCTTCTGCTTGCATTTCAAAAACTCGACATTTTCATGTTGGCATCT
CAATCCGATGTGCTTAGACGACGCCGTTAGCACTGCCGATGACGGGATCG
GATCACCGCTAGGGTCCACAGCGGTCGCCATCTCCAATCGATTATCTTTT
GTCGATTTCTTTGATAAGAGCTTTCCCTCGTGC
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