CX077886

Overview
NameCX077886
Unique NameCX077886
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: RH56_ARATH (DEAD-box ATP-dependent RNA helicase 56 OS=Arabidopsis thaliana GN=RH56 PE=2 SV=2)

HSP 1 Score: 302.368 bits (773), Expect = 2.285e-81
Identity = 152/159 (95.60%), Postives = 157/159 (98.74%), Query Frame = -3
Query:  408 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 884
            KLSE+EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYK FKEG+KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV+SASDS++LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  269 KLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS 427          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: RH15_ARATH (DEAD-box ATP-dependent RNA helicase 15 OS=Arabidopsis thaliana GN=RH15 PE=2 SV=2)

HSP 1 Score: 300.056 bits (767), Expect = 1.134e-80
Identity = 151/159 (94.97%), Postives = 156/159 (98.11%), Query Frame = -3
Query:  408 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 884
            KLSE+EK RKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYK FKEG+KRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFV+SASDS++LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  269 KLSEMEKTRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYMPS 427          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: RH56_ORYSJ (DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sativa subsp. japonica GN=Os01g0549700 PE=2 SV=2)

HSP 1 Score: 294.278 bits (752), Expect = 6.223e-79
Identity = 149/159 (93.71%), Postives = 154/159 (96.86%), Query Frame = -3
Query:  408 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 884
            KLSE EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL ECNFP+I IHSGM+QEERLTRYK FKEG+KRILVATDLVGRGIDIERVNIVINYDMPDSAD+YLHRVGRAGRFGTKGLAITFVSSASDSD+LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  274 KLSEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYMPS 432          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: RH15_ORYSJ (DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sativa subsp. japonica GN=Os01g0550000 PE=2 SV=1)

HSP 1 Score: 294.278 bits (752), Expect = 6.223e-79
Identity = 149/159 (93.71%), Postives = 154/159 (96.86%), Query Frame = -3
Query:  408 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 884
            KLSE EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLL ECNFP+I IHSGM+QEERLTRYK FKEG+KRILVATDLVGRGIDIERVNIVINYDMPDSAD+YLHRVGRAGRFGTKGLAITFVSSASDSD+LNQVQ RFEVDIKELPEQIDTSTYMPS
Sbjct:  274 KLSEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYMPS 432          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: SUB2_SCHPO (ATP-dependent RNA helicase uap56 OS=Schizosaccharomyces pombe GN=uap56 PE=1 SV=3)

HSP 1 Score: 239.965 bits (611), Expect = 1.393e-62
Identity = 118/157 (75.16%), Postives = 136/157 (86.62%), Query Frame = -3
Query:  414 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYM 884
            KL E  KNRK+NDLLD+L+FNQVVIFVKSVSRA EL++LL ECNFPSICIH G+ QEER+ RYK FK+ +KRI VATD+ GRGIDIERVNIVINYDMPDS D+YLHRVGRAGRFGTKGLAITF SS  DS IL+++Q RFEV+I ELP++ID  +YM
Sbjct:  276 KLEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQILDKIQERFEVNITELPDEIDVGSYM 432          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: SUB2_ASPTN (ATP-dependent RNA helicase sub2 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=sub2 PE=3 SV=1)

HSP 1 Score: 225.713 bits (574), Expect = 2.718e-58
Identity = 112/158 (70.89%), Postives = 131/158 (82.91%), Query Frame = -3
Query:  414 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 884
            KLSE EKNRKLNDLLD L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVSS  D  +L  ++ RFEV + E PE  +D+STYM
Sbjct:  280 KLSESEKNRKLNDLLDNLEFNQVIIFVKSTQRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEDDEKVLKDIEKRFEVALPEYPEGGVDSSTYM 437          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: SUB2_NEOFI (ATP-dependent RNA helicase sub2 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=sub2 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.550e-58
Identity = 111/158 (70.25%), Postives = 133/158 (84.18%), Query Frame = -3
Query:  414 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 884
            KLSE EKNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVSS  D  +L +++ RFEV + E PE  +D+STYM
Sbjct:  283 KLSESEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKEIEKRFEVALPEYPEGGVDSSTYM 440          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: SUB2_LODEL (ATP-dependent RNA helicase SUB2 OS=Lodderomyces elongisporus GN=SUB2 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.550e-58
Identity = 108/158 (68.35%), Postives = 131/158 (82.91%), Query Frame = -3
Query:  414 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQ-IDTSTYM 884
            KL E EKNRKL+DLLD+L+FNQV+IFVKS  RA ELNKLL  CNFPSI +HSG+ QEER+ RYK FKE NKRI V+TD+ GRGIDIER+N+ INYD+P+ AD YLHRVGRAGRFGTKGL I+FVS+  D ++L ++Q+RF+V I E PE+ +D STYM
Sbjct:  274 KLEEKEKNRKLSDLLDSLEFNQVIIFVKSTQRANELNKLLCACNFPSIAVHSGLPQEERIERYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLGISFVSTKEDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 431          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: SUB2_CRYNE (ATP-dependent RNA helicase SUB2 OS=Cryptococcus neoformans GN=SUB2 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.550e-58
Identity = 110/159 (69.18%), Postives = 130/159 (81.76%), Query Frame = -3
Query:  408 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPEQIDTSTYMPS 884
            KL E EKNRKLNDLLD L+FNQV IFVKSV RA +L+ LL ECNFPSICIHSG+ Q ER++R++ FK   KRILVATD+ GRGID+ERVN+VINYD P  AD+YLHRVGRAGRFGTKGLAI+FVSS +D ++L ++Q RF V I  LPE +D +TYM S
Sbjct:  284 KLEEREKNRKLNDLLDNLEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQAERISRFQQFKAFEKRILVATDIFGRGIDVERVNVVINYDAPSDADSYLHRVGRAGRFGTKGLAISFVSSDADQEVLQRIQERFTVAIPTLPETVDPATYMTS 442          
BLAST of CX077886 vs. ExPASy Swiss-Prot
Match: SUB2_ASPFU (ATP-dependent RNA helicase sub2 OS=Aspergillus fumigatus GN=sub2 PE=3 SV=1)

HSP 1 Score: 225.328 bits (573), Expect = 3.550e-58
Identity = 111/158 (70.25%), Postives = 133/158 (84.18%), Query Frame = -3
Query:  414 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGNKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDILNQVQARFEVDIKELPE-QIDTSTYM 884
            KLSE EKNRKLN+LLD+L+FNQV+IFVKS  RA EL+KLL ECNFPSI +HSG+SQEER+ RYK FKE NKRI VATD+ GRGIDIER+N+ INYD+P  AD+YLHRVGRAGRFGTKGL+I+FVSS  D  +L +++ RFEV + E PE  +D+STYM
Sbjct:  290 KLSESEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKEIEKRFEVALPEYPEGGVDSSTYM 447          
The following BLAST results are available for this feature:
BLAST of CX077886 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RH56_ARATH2.285e-8195.60DEAD-box ATP-dependent RNA helicase 56 OS=Arabidop... [more]
RH15_ARATH1.134e-8094.97DEAD-box ATP-dependent RNA helicase 15 OS=Arabidop... [more]
RH56_ORYSJ6.223e-7993.71DEAD-box ATP-dependent RNA helicase 56 OS=Oryza sa... [more]
RH15_ORYSJ6.223e-7993.71DEAD-box ATP-dependent RNA helicase 15 OS=Oryza sa... [more]
SUB2_SCHPO1.393e-6275.16ATP-dependent RNA helicase uap56 OS=Schizosaccharo... [more]
SUB2_ASPTN2.718e-5870.89ATP-dependent RNA helicase sub2 OS=Aspergillus ter... [more]
SUB2_NEOFI3.550e-5870.25ATP-dependent RNA helicase sub2 OS=Neosartorya fis... [more]
SUB2_LODEL3.550e-5868.35ATP-dependent RNA helicase SUB2 OS=Lodderomyces el... [more]
SUB2_CRYNE3.550e-5869.18ATP-dependent RNA helicase SUB2 OS=Cryptococcus ne... [more]
SUB2_ASPFU3.550e-5870.25ATP-dependent RNA helicase sub2 OS=Aspergillus fum... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5F04_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5F04-K7-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077886 ID=CX077886; Name=CX077886; organism=Citrus sinensis; type=EST; length=886bp
CTTTTTTTTTAGTACTAAAATAGCTACAACATTAGGCACTTAGAAGCCAA
TTTTGAAAAAATAAAAATAAAAACAATGTAGCGACCAGAGTTGGTGTCTA
AGAATCTAATCGATTAACAGTGCAATAAAAATTATCTCACAAGGAACTCT
AATACAAGCCAAGGTACCAGTTGAATAACATTCCCAATAGCAGCAGTACC
CAGAAGGTATTAAAAGGCTACAAATCCCAAAAACAAGAAAAGGCAGCGTA
AAACCACAAAATAGAGGGATCCATCTGACAAATCTCCAAGGCAACATATA
TGAAAGCCATTGGACTTCATCTAAAGAAACAAATACATAAAGGGCCTTCA
GCACCCTGCTTCCACATGCGCCTCAAATTTTCCACATCAGAGAACAGATC
TCCACTATGATGGCATGTATGTAGATGTATCAATCTGCTCAGGAAGCTCC
TTTATATCTACTTCAAACCTTGCCTGAACCTGATTGAGAATATCGGAGTC
TGAAGCAGATGATACAAAAGTAATTGCAAGGCCCTTGGTGCCAAACCTAC
CAGCTCTACCAACCCTGTGCAGATAAGTATCAGCAGAATCTGGCATGTCA
TAATTGATGACAATGTTGACACGCTCAATGTCAATTCCCCTACCAACCAA
ATCTGTGGCCACAAGAATCCTCTTGTTCCCCTCCTTGAAACCTTTGTAAC
GCGTCAACCTTTCTTCTTGGGACATGCCAGAATGGATGCATATAGAAGGA
AAATTGCATTCTACAAGTAACTTGTTTAACTCCGCTGCTCGGCTAACACT
TTTGACAAAGATAACAACTTGATTAAAGTCCAATGCATCAAGGAGATCAT
TCAACTTCCGATTTTTCTCCAGCTCACTCAATTTGA
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