CX077879

Overview
NameCX077879
Unique NameCX077879
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length838
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077879 vs. ExPASy Swiss-Prot
Match: YSL3_ARATH (Metal-nicotianamine transporter YSL3 OS=Arabidopsis thaliana GN=YSL3 PE=2 SV=1)

HSP 1 Score: 330.872 bits (847), Expect = 5.551e-90
Identity = 157/185 (84.86%), Postives = 169/185 (91.35%), Query Frame = -1
Query:  284 HDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKLNSKNADLMIPAVASGLICGDGLWILPSSILALANVRPPICMKFLAS 838
            HDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGN +GEYKAPYA+VYRNMAILGVEGFSALPQHCLQLCYGFFAFA+AANL+RD  P KI  W+PLPMAMAVPFLVG YFAIDMC+GSL+VFAW+  +   A LM+PAVASGLICGDGLWILPSS+LALA VRPPICM F+ S
Sbjct:  487 HDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNQEGEYKAPYALVYRNMAILGVEGFSALPQHCLQLCYGFFAFAVAANLVRDRLPDKIGNWVPLPMAMAVPFLVGGYFAIDMCVGSLIVFAWNMRDRVKAGLMVPAVASGLICGDGLWILPSSVLALAGVRPPICMGFMPS 671          
BLAST of CX077879 vs. ExPASy Swiss-Prot
Match: YSL2_ARATH (Metal-nicotianamine transporter YSL2 OS=Arabidopsis thaliana GN=YSL2 PE=2 SV=1)

HSP 1 Score: 322.398 bits (825), Expect = 1.974e-87
Identity = 152/185 (82.16%), Postives = 168/185 (90.81%), Query Frame = -1
Query:  284 HDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKLNSKNADLMIPAVASGLICGDGLWILPSSILALANVRPPICMKFLAS 838
            HDFKTGHLT TSPRSMLV+QAIGTAIGCVVAPLTFFLFYKAFDVGN +GEYKAPYA++YRNMAI+GV+G SALP+HCL+LCYGFFAFA+AANL RDL P K  KWIPLPMAMAVPFLVG  FAIDMC+GSLVV+ W K+N K AD+M+PAVASGLICGDGLWILPSS+LALA VRPPICM F A+
Sbjct:  479 HDFKTGHLTQTSPRSMLVAQAIGTAIGCVVAPLTFFLFYKAFDVGNQNGEYKAPYAMIYRNMAIIGVQGPSALPKHCLELCYGFFAFAVAANLARDLLPDKPGKWIPLPMAMAVPFLVGGSFAIDMCIGSLVVYVWKKVNRKKADVMVPAVASGLICGDGLWILPSSLLALAKVRPPICMNFTAA 663          
BLAST of CX077879 vs. ExPASy Swiss-Prot
Match: YSL9_ORYSJ (Probable metal-nicotianamine transporter YSL9 OS=Oryza sativa subsp. japonica GN=YSL9 PE=2 SV=2)

HSP 1 Score: 310.842 bits (795), Expect = 5.944e-84
Identity = 139/182 (76.37%), Postives = 161/182 (88.46%), Query Frame = -1
Query:  293 HDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKLNSKNADLMIPAVASGLICGDGLWILPSSILALANVRPPICMKF 838
            HDFKTGHLTLTSPRSM+++QAIGT +GCV++PLTFFLFY AFD+GNP+G +KAPYA+VYRNMAILGVEGFSALPQHCLQLCYGFF FA+AANL RDL P K  +W+PLPMAM VPFLVGA FAIDMC+GSL+VF WH ++   A LM+PAVASGLICGDGLWI P+S+LALA + PP+CM F
Sbjct:  499 HDFKTGHLTLTSPRSMIIAQAIGTVMGCVISPLTFFLFYSAFDIGNPEGYWKAPYALVYRNMAILGVEGFSALPQHCLQLCYGFFGFAVAANLTRDLCPPKYGRWVPLPMAMGVPFLVGASFAIDMCIGSLIVFTWHIIDKSKAALMVPAVASGLICGDGLWIFPASLLALAKISPPMCMAF 680          
BLAST of CX077879 vs. ExPASy Swiss-Prot
Match: YSL16_ORYSJ (Probable metal-nicotianamine transporter YSL16 OS=Oryza sativa subsp. japonica GN=YSL16 PE=2 SV=2)

HSP 1 Score: 304.679 bits (779), Expect = 4.260e-82
Identity = 139/183 (75.96%), Postives = 162/183 (88.52%), Query Frame = -1
Query:  290 HDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKLNSKNADLMIPAVASGLICGDGLWILPSSILALANVRPPICMKFL 838
            HDFKTGHLTLTSPRSMLV Q +GT +GCVVAPLTFFLFYKAFDVG+P+G +KAPYA++YRNMAI+GVEGFSALP+HCLQLC GFFAFA+ ANL RD  P++  +++PLPMAMAVPFLVGA FAIDMC GSLVVF WH+ + K A L++PAVASGLICGDG+W  PSS+LALA V+PPICMKF+
Sbjct:  490 HDFKTGHLTLTSPRSMLVGQVVGTLMGCVVAPLTFFLFYKAFDVGDPNGYWKAPYALIYRNMAIIGVEGFSALPRHCLQLCAGFFAFAVLANLARDFLPRRYGRYMPLPMAMAVPFLVGASFAIDMCAGSLVVFLWHRFDGKRAALLVPAVASGLICGDGIWTFPSSLLALAKVKPPICMKFI 672          
BLAST of CX077879 vs. ExPASy Swiss-Prot
Match: YSL2_ORYSJ (Metal-nicotianamine transporter YSL2 OS=Oryza sativa subsp. japonica GN=YSL2 PE=2 SV=2)

HSP 1 Score: 303.138 bits (775), Expect = 1.239e-81
Identity = 136/182 (74.73%), Postives = 163/182 (89.56%), Query Frame = -1
Query:  293 HDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKLNSKNADLMIPAVASGLICGDGLWILPSSILALANVRPPICMKF 838
            HDFKTGHLTLTSPRSMLV QAIGTA+GC++APLTF LFYKAFD+GNPDG +KAPYA+++RNMAILGVEGFSALP+HCL+L  GFFAF++  NL+RD  P+K   ++PLP AMAVPFLVGA FAIDMC+GSL+VFAWHK+NSK + L++PAVASG ICGDG+W+ PSS+L+LA V+PPICMKF
Sbjct:  489 HDFKTGHLTLTSPRSMLVGQAIGTAMGCIIAPLTFLLFYKAFDIGNPDGYWKAPYALIFRNMAILGVEGFSALPKHCLELSAGFFAFSVLINLMRDFLPRKYRDYVPLPTAMAVPFLVGANFAIDMCVGSLIVFAWHKINSKESALLVPAVASGFICGDGIWMFPSSLLSLAKVKPPICMKF 670          
BLAST of CX077879 vs. ExPASy Swiss-Prot
Match: YSL1_ARATH (Metal-nicotianamine transporter YSL1 OS=Arabidopsis thaliana GN=YSL1 PE=2 SV=2)

HSP 1 Score: 301.982 bits (772), Expect = 2.761e-81
Identity = 132/184 (71.74%), Postives = 163/184 (88.59%), Query Frame = -1
Query:  284 DFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKLNSKNADLMIPAVASGLICGDGLWILPSSILALANVRPPICMKFLAS 835
            DFKT H T+TSP++M  SQ IGT +GC+V PL+FFLFYKAFD+GNP+GE+KAPYA++YRNMAILGV+GFSALP HCLQ+CYGFF FA+  N++RDL+P KI +++PLP AMAVPFLVGAYFAIDMC+G+L+VF W K+N K A+ M+PAVASGLICG+GLW LP+++LALA V+PPICMKFLAS
Sbjct:  490 DFKTAHYTMTSPKAMFASQMIGTVVGCIVTPLSFFLFYKAFDIGNPNGEFKAPYALIYRNMAILGVQGFSALPLHCLQMCYGFFGFAVLVNVVRDLTPAKIGRFMPLPTAMAVPFLVGAYFAIDMCVGTLIVFVWEKMNRKKAEFMVPAVASGLICGEGLWTLPAAVLALAGVKPPICMKFLAS 673          
BLAST of CX077879 vs. ExPASy Swiss-Prot
Match: YSL15_ORYSJ (Iron-phytosiderophore transporter YSL15 OS=Oryza sativa subsp. japonica GN=YSL15 PE=2 SV=1)

HSP 1 Score: 287.345 bits (734), Expect = 7.038e-77
Identity = 131/182 (71.98%), Postives = 153/182 (84.07%), Query Frame = -1
Query:  293 HDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKLNSKNADLMIPAVASGLICGDGLWILPSSILALANVRPPICMKF 838
            HD KTGHLTLTSPRSMLV + IGT IGC +APLTF LFY+AFD+GNPDG +KAPYA++YRNMAILG+EG SALP+HCL L  GFFAFA+  N+ RD  P +  K +PLP AMAVPFLVGA FAIDMC+GSLV+FAW+K+N K A  M+PAVASGL+CGDG+W  PSSILALA ++PPICMKF
Sbjct:  487 HDLKTGHLTLTSPRSMLVGELIGTGIGCFIAPLTFMLFYRAFDIGNPDGYWKAPYALIYRNMAILGIEGISALPKHCLSLSVGFFAFAVLTNVARDALPARYKKLVPLPTAMAVPFLVGASFAIDMCVGSLVLFAWNKMNKKEAAFMVPAVASGLMCGDGIWTFPSSILALAKIKPPICMKF 668          
BLAST of CX077879 vs. ExPASy Swiss-Prot
Match: YS1_MAIZE (Iron-phytosiderophore transporter yellow stripe 1 OS=Zea mays GN=YS1 PE=2 SV=1)

HSP 1 Score: 286.96 bits (733), Expect = 9.192e-77
Identity = 132/182 (72.53%), Postives = 154/182 (84.62%), Query Frame = -1
Query:  293 HDFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAFDVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKLNSKNADLMIPAVASGLICGDGLWILPSSILALANVRPPICMKF 838
            HDFKTGHLT+TSPRS+LV+Q IGTA+GCVVAPLTF LFY AFD+GNP G +KAPY ++YRNMAILGVEGFS LP+HCL L  GFFAFA   ++ RD+ P+K A+++PLPMAMAVPFLVG  FAIDMC+GSL VF W K+N K A  M+PAVASGLICGDG+W  PSSILALA ++PPICMKF
Sbjct:  497 HDFKTGHLTMTSPRSLLVAQFIGTAMGCVVAPLTFLLFYNAFDIGNPTGYWKAPYGLIYRNMAILGVEGFSVLPRHCLALSAGFFAFAFVFSVARDVLPRKYARFVPLPMAMAVPFLVGGSFAIDMCVGSLAVFVWEKVNRKEAVFMVPAVASGLICGDGIWTFPSSILALAKIKPPICMKF 678          
BLAST of CX077879 vs. ExPASy Swiss-Prot
Match: YSL12_ORYSJ (Probable metal-nicotianamine transporter YSL12 OS=Oryza sativa subsp. japonica GN=YSL12 PE=2 SV=2)

HSP 1 Score: 271.552 bits (693), Expect = 3.996e-72
Identity = 128/184 (69.57%), Postives = 153/184 (83.15%), Query Frame = -1
Query:  287 DFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAF-DVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKLNSKNADLMIPAVASGLICGDGLWILPSSILALANVRPPICMKFLA 835
            DFKTG+LTL SPRSM VSQ IGTA+GCV+AP  F+LFYKAF D+G    EY APYAIVYRNMAILGV+GFS+LP+HCL LCY FFA AIA NL RDL+P K+A++IPLPMAMA+PF +G+YFAIDM +G++++F W  +N   A+   PAVASGLICGDG+W LP SILALA V+PPICMKFL+
Sbjct:  521 DFKTGYLTLASPRSMFVSQVIGTAMGCVIAPCVFWLFYKAFADIGVSGTEYPAPYAIVYRNMAILGVDGFSSLPKHCLTLCYIFFAAAIAINLARDLAPSKVARFIPLPMAMAIPFYIGSYFAIDMFIGTVILFVWEMVNKAKAEAFAPAVASGLICGDGIWTLPQSILALAKVKPPICMKFLS 704          
BLAST of CX077879 vs. ExPASy Swiss-Prot
Match: YSL14_ORYSJ (Probable metal-nicotianamine transporter YSL14 OS=Oryza sativa subsp. japonica GN=YSL14 PE=2 SV=1)

HSP 1 Score: 270.781 bits (691), Expect = 6.817e-72
Identity = 127/184 (69.02%), Postives = 154/184 (83.70%), Query Frame = -1
Query:  287 DFKTGHLTLTSPRSMLVSQAIGTAIGCVVAPLTFFLFYKAF-DVGNPDGEYKAPYAIVYRNMAILGVEGFSALPQHCLQLCYGFFAFAIAANLLRDLSPKKIAKWIPLPMAMAVPFLVGAYFAIDMCLGSLVVFAWHKLNSKNADLMIPAVASGLICGDGLWILPSSILALANVRPPICMKFLA 835
            DFKTG+LTL SPRSM +SQ IGT +GCV+AP  F+LFYKAF ++G    EY APYAIVYRNMAILGV+GF++LP++CL LCY FFA AIA NL+RDL+P K++++IPLPMAMA+PF +G+YFAIDM LGS+++F W KLN   AD   PAVASGLICGDG+W LP SILALA V+PPICMKFL+
Sbjct:  531 DFKTGYLTLASPRSMFISQVIGTGMGCVIAPCVFWLFYKAFSNIGTSGTEYPAPYAIVYRNMAILGVDGFNSLPENCLTLCYIFFAAAIAINLIRDLAPHKVSRFIPLPMAMAIPFYIGSYFAIDMFLGSVILFVWEKLNKAKADAFGPAVASGLICGDGIWTLPQSILALAKVKPPICMKFLS 714          
The following BLAST results are available for this feature:
BLAST of CX077879 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
YSL3_ARATH5.551e-9084.86Metal-nicotianamine transporter YSL3 OS=Arabidopsi... [more]
YSL2_ARATH1.974e-8782.16Metal-nicotianamine transporter YSL2 OS=Arabidopsi... [more]
YSL9_ORYSJ5.944e-8476.37Probable metal-nicotianamine transporter YSL9 OS=O... [more]
YSL16_ORYSJ4.260e-8275.96Probable metal-nicotianamine transporter YSL16 OS=... [more]
YSL2_ORYSJ1.239e-8174.73Metal-nicotianamine transporter YSL2 OS=Oryza sati... [more]
YSL1_ARATH2.761e-8171.74Metal-nicotianamine transporter YSL1 OS=Arabidopsi... [more]
YSL15_ORYSJ7.038e-7771.98Iron-phytosiderophore transporter YSL15 OS=Oryza s... [more]
YS1_MAIZE9.192e-7772.53Iron-phytosiderophore transporter yellow stripe 1 ... [more]
YSL12_ORYSJ3.996e-7269.57Probable metal-nicotianamine transporter YSL12 OS=... [more]
YSL14_ORYSJ6.817e-7269.02Probable metal-nicotianamine transporter YSL14 OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5E11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5E11-I21-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077879 ID=CX077879; Name=CX077879; organism=Citrus sinensis; type=EST; length=838bp
GTACCGCGGCCCCCCCTTTTTTCGCAGAATTCATATATTATTAACCACAA
GGAGTAAATTTTACAACTGCTTGTATAAATTATTCCTAATTGATTGACAC
TACAGCTCGCAAAGATACATAATCCTAAAGCAGCTTCAGTACAGTTATTT
TAGTTGCTGTGCTTTCTCTATTTCTTTGTAACTTCATCTTACTATGATCT
AGTTGTCTGTTATCAACAACAGTTTTTGCTCTCTCTTACTCTAAGACTCT
CTCTGCCTCCCGCCACTTAAAGAAATTCTACTAGGATGCCAAGAACTTCA
TGCAGATTGGAGGACGAACATTGGCCAAAGCAAGAATTGATGAAGGGAGG
ATCCATAATCCGTCTCCACAAATCAAGCCTGAAGCAACTGCAGGAATCAT
TAAATCCGCATTCTTGCTATTCAACTTGTGCCATGCAAACACAACCAAGC
TTCCGAGACACATGTCAATTGCAAAATAGGCACCAACTAGGAATGGAACA
GCCATAGCCATTGGAAGGGGAATCCATTTTGCTATTTTCTTAGGAGAAAG
ATCTCTTAGTAAGTTTGCCGCAATGGCAAAGGCAAAAAACCCATAACAGA
GCTGTAAACAATGCTGAGGCAGGGCAGAGAAGCCCTCAACACCAAGAATT
GCCATGTTTCGGTAGACGATAGCATAAGGAGCTTTGTATTCACCATCTGG
GTTACCAACATCAAAAGCCTTGTAGAAGAGAAAGAATGTAAGAGGGGCTA
CAACGCAACCTATGGCAGTCCCAATGGCCTGACTCACAAGCATCGACCTG
GGTGAAGTGAGAGTGAGATGACCGGTCTTAAAATCATG
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