CX077875

Overview
NameCX077875
Unique NameCX077875
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length861
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX077875 vs. ExPASy Swiss-Prot
Match: IF4G1_ARATH (Eukaryotic translation initiation factor 4G OS=Arabidopsis thaliana GN=EIF4G PE=1 SV=1)

HSP 1 Score: 270.011 bits (689), Expect = 1.207e-71
Identity = 153/285 (53.68%), Postives = 186/285 (65.26%), Query Frame = 1 
Query:   13 PTQNRGYGGQDVRFEDRQSYEARTLSVPLPQRPIGDESITLGPQGGLARGMSIRGPPAMSSTPLPDISP-GAGEPRRIPAGLNGFSSLSERPAYGSREDIIPRYHPDRFAAPPAFDQLNAQERNINYGNRDLRAAERSFD-RPLATSPTQG-QVPSITQNVPSEKVWSEEYLREKSIAAIKEFYSARDEKEVAWCIKDLNSPGFHPSMVSLWVTDSFERKDMERDLLAKLLVNLAKSREGMLSQGQLIKGFESVLTTLEDAVNDAPRAAEFLGRIFAKVVEENVI 858
            P Q RG+  QD+RF+DR SYE R   VP+PQR + +E ITLGPQGGL +GMSIR P   S+T   D +  G G+ RR   GLNGF S   RPA                 +P    + + QER   Y +R+  +  R+ D  P  +S  Q  Q PS T N P E   SEE L   S++AIKE+YSARDE E+  C+KD+NSP +HP+M+SLWVTDSFERKD ERDLLAKLLVNL KS +  L++ QL+KGFESVL TLEDAVNDAP+AAEFLGRIF K V E V+
Sbjct: 1388 PPQGRGFSNQDIRFDDRPSYEPRM--VPMPQRSVCEEPITLGPQGGLGQGMSIRRPAVASNTYQSDATQAGGGDSRRPAGGLNGFGS--HRPA-----------------SPVTHGRSSPQERGTAYVHREFASLSRASDLSPEVSSARQVLQGPSATVNSPRENALSEEQLENLSLSAIKEYYSARDENEIGMCMKDMNSPAYHPTMISLWVTDSFERKDKERDLLAKLLVNLVKSADNALNEVQLVKGFESVLKTLEDAVNDAPKAAEFLGRIFGKSVTEKVV 1651
The following BLAST results are available for this feature:
BLAST of CX077875 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IF4G1_ARATH1.207e-7153.68Eukaryotic translation initiation factor 4G OS=Ara... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_5E09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5E09-I17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077875 ID=CX077875; Name=CX077875; organism=Citrus sinensis; type=EST; length=861bp
TTCCGAGGATTGCCTACTCAAAATCGTGGTTATGGCGGTCAGGATGTACG
GTTTGAGGACAGGCAGTCTTATGAAGCTCGGACCTTGTCAGTTCCCTTAC
CTCAAAGACCCATAGGTGATGAATCAATAACCTTGGGCCCACAAGGCGGT
CTTGCCAGAGGAATGTCCATTAGAGGACCACCAGCAATGTCAAGCACTCC
CTTACCCGATATTTCTCCTGGTGCTGGAGAACCTAGAAGAATTCCAGCTG
GTTTGAATGGTTTTAGTTCTTTATCAGAGCGGCCTGCTTATGGTTCAAGG
GAGGATATAATACCAAGATATCACCCGGATAGATTTGCAGCCCCGCCTGC
CTTTGACCAATTGAACGCCCAAGAGCGTAATATCAATTACGGTAACCGAG
ACCTAAGGGCTGCTGAGCGAAGTTTTGATCGGCCTCTTGCAACTTCACCC
ACACAAGGCCAGGTACCATCCATCACCCAAAATGTTCCTTCAGAAAAGGT
GTGGTCTGAAGAATACCTACGGGAGAAGTCAATTGCTGCAATTAAAGAAT
TCTACAGTGCCCGGGATGAGAAAGAAGTTGCTTGGTGTATCAAAGATTTG
AATTCCCCAGGTTTCCACCCTTCAATGGTCTCTCTCTGGGTAACAGACTC
TTTTGAGAGGAAGGACATGGAAAGGGATCTTTTGGCTAAGCTGCTTGTGA
ATCTTGCTAAATCTCGGGAAGGCATGTTAAGTCAAGGCCAGCTCATCAAA
GGGTTTGAATCTGTTCTCACTACTTTGGAGGATGCAGTAAATGATGCTCC
AAGAGCAGCAGAATTTCTTGGCCGTATATTTGCCAAAGTTGTCGAAGAGA
ATGTGATTCCC
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