CX077860

Overview
NameCX077860
Unique NameCX077860
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length649
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077860 vs. ExPASy Swiss-Prot
Match: POL_CAMVS (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain Strasbourg) GN=ORF V PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.515e-48
Identity = 96/185 (51.89%), Postives = 130/185 (70.27%), Query Frame = -2
Query:    1 KLETIKSQLKQVYEENPLALWKPDH-PRAKIELIE-NRIIRLKPMMYTEEDREEFKIQIKELLGLNLIRNSNSPHNSPAFMVRKRAEQVRGKARMVINYRELNKYTKFDGYFLPNKEVLINLVKNKTYYSKFDCKSGFWQIKMEENSIPYTAFSTPQGHYEWLVMPFGLKNAPQIFQSRMDKIFR 549
            +++ I+  L++V  ENPL   K     +A I+L + ++ I++KPM Y+  DREEF  QIKELL L +I+ S SPH +PAF+V   AE+ RGK RMV+NY+ +NK T  D Y LPNK+ L+ L++ K  +S FDCKSGFWQ+ +++ S P TAF+ PQGHYEW V+PFGLK AP IFQ  MD+ FR
Sbjct:  208 RMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR 392          
BLAST of CX077860 vs. ExPASy Swiss-Prot
Match: POL_CAMVE (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain BBC) GN=ORF V PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.979e-48
Identity = 96/185 (51.89%), Postives = 130/185 (70.27%), Query Frame = -2
Query:    1 KLETIKSQLKQVYEENPLALWKPDH-PRAKIELIE-NRIIRLKPMMYTEEDREEFKIQIKELLGLNLIRNSNSPHNSPAFMVRKRAEQVRGKARMVINYRELNKYTKFDGYFLPNKEVLINLVKNKTYYSKFDCKSGFWQIKMEENSIPYTAFSTPQGHYEWLVMPFGLKNAPQIFQSRMDKIFR 549
            +++ I+  L++V  ENPL   K     +A I+L + ++ I++KPM Y+  DREEF  QIKELL L +I+ S SPH +PAF+V   AE+ RGK RMV+NY+ +NK T  D Y LPNK+ L+ L++ K  +S FDCKSGFWQ+ +++ S P TAF+ PQGHYEW V+PFGLK AP IFQ  MD+ FR
Sbjct:  208 RMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR 392          
BLAST of CX077860 vs. ExPASy Swiss-Prot
Match: POL_CAMVC (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain CM-1841) GN=ORF V PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.979e-48
Identity = 96/185 (51.89%), Postives = 130/185 (70.27%), Query Frame = -2
Query:    1 KLETIKSQLKQVYEENPLALWKPDH-PRAKIELIE-NRIIRLKPMMYTEEDREEFKIQIKELLGLNLIRNSNSPHNSPAFMVRKRAEQVRGKARMVINYRELNKYTKFDGYFLPNKEVLINLVKNKTYYSKFDCKSGFWQIKMEENSIPYTAFSTPQGHYEWLVMPFGLKNAPQIFQSRMDKIFR 549
            +++ I+  L++V  ENPL   K     +A I+L + ++ I++KPM Y+  DREEF  QIKELL L +I+ S SPH +PAF+V   AE+ RGK RMV+NY+ +NK T  D Y LPNK+ L+ L++ K  +S FDCKSGFWQ+ +++ S P TAF+ PQGHYEW V+PFGLK AP IFQ  MD+ FR
Sbjct:  208 RMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATIGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR 392          
BLAST of CX077860 vs. ExPASy Swiss-Prot
Match: POL_CAMVD (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain D/H) GN=ORF V PE=3 SV=1)

HSP 1 Score: 189.889 bits (481), Expect = 9.820e-48
Identity = 95/185 (51.35%), Postives = 129/185 (69.73%), Query Frame = -2
Query:    1 KLETIKSQLKQVYEENPLALWKPDH-PRAKIELIE-NRIIRLKPMMYTEEDREEFKIQIKELLGLNLIRNSNSPHNSPAFMVRKRAEQVRGKARMVINYRELNKYTKFDGYFLPNKEVLINLVKNKTYYSKFDCKSGFWQIKMEENSIPYTAFSTPQGHYEWLVMPFGLKNAPQIFQSRMDKIFR 549
            +++ I+  L++V  ENPL   K     +A I+L + ++ I++KPM Y+  DREEF  QIKELL L +I+ S SPH +PAF+V   AE+ RGK RMV+NY+ +NK T  D Y  PNK+ L+ L++ K  +S FDCKSGFWQ+ +++ S P TAF+ PQGHYEW V+PFGLK AP IFQ  MD+ FR
Sbjct:  203 RMQKIEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAEKRRGKKRMVVNYKAMNKATVGDAYNPPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR 387          
BLAST of CX077860 vs. ExPASy Swiss-Prot
Match: POL_CAMVN (Enzymatic polyprotein OS=Cauliflower mosaic virus (strain NY8153) GN=ORF V PE=3 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 2.857e-47
Identity = 94/185 (50.81%), Postives = 127/185 (68.65%), Query Frame = -2
Query:    1 KLETIKSQLKQVYEENPLALWKPDH-PRAKIELIE-NRIIRLKPMMYTEEDREEFKIQIKELLGLNLIRNSNSPHNSPAFMVRKRAEQVRGKARMVINYRELNKYTKFDGYFLPNKEVLINLVKNKTYYSKFDCKSGFWQIKMEENSIPYTAFSTPQGHYEWLVMPFGLKNAPQIFQSRMDKIFR 549
            +++  +  L++V  ENPL   K     +A I+L + ++ I++KPM Y+  DREEF  QIKELL L +I+ S SPH +PAF+V   AE  RG  RMV+NY+ +NK T  D Y LPNK+ L+ L++ K  +S FDCKSGFWQ+ +++ S P TAF+ PQGHYEW V+PFGLK AP IFQ  MD+ FR
Sbjct:  209 RMQKTEELLEKVCSENPLDPNKTKQWMKASIKLSDPSKAIKVKPMKYSPMDREEFDKQIKELLDLKVIKPSKSPHMAPAFLVNNEAENGRGNKRMVVNYKAMNKATVGDAYNLPNKDELLTLIRGKKIFSSFDCKSGFWQVLLDQESRPLTAFTCPQGHYEWNVVPFGLKQAPSIFQRHMDEAFR 393          
BLAST of CX077860 vs. ExPASy Swiss-Prot
Match: POL_CERV (Enzymatic polyprotein OS=Carnation etched ring virus GN=ORF V PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.016e-44
Identity = 94/182 (51.65%), Postives = 123/182 (67.58%), Query Frame = -2
Query:   28 YNINI-KLETIKSQLKQVYEENPLALWKPDH-PRAKIELIENR-IIRLKPMMYTEEDREEFKIQIKELLGLNLIRNSNSPHNSPAFMVRKRAEQVRGKARMVINYRELNKYTKFDGYFLPNKEVLINLVKNKTYYSKFDCKSGFWQIKMEENSIPYTAFSTPQGHYEWLVMPFGLKNAPQIF 564
            Y I I K   I+  L++V  ENP+   K      A IELI+ + ++++KPM Y+  DREEF  QIKELL L +I+ S S H SPAF+V   AE+ RGK RMV+NY+ +NK TK D + LPNK+ L+ LV+ K  YS FDCKSG WQ+ +++ S   TAF+ PQGHY+W V+PFGLK AP IF
Sbjct:  184 YEIQISKFSAIEEMLERVSSENPIDPEKSKQWMTATIELIDPKTVVKVKPMSYSPSDREEFDRQIKELLELKVIKPSKSTHMSPAFLVENEAERRRGKKRMVVNYKAMNKATKGDAHNLPNKDELLTLVRGKKIYSSFDCKSGLWQVLLDKESQLLTAFTCPQGHYQWNVVPFGLKQAPSIF 365          
BLAST of CX077860 vs. ExPASy Swiss-Prot
Match: POL_FMVD (Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) GN=ORF V PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.917e-43
Identity = 93/196 (47.45%), Postives = 130/196 (66.33%), Query Frame = -2
Query:   16 EKHYLISKGQSYNINIKLETIKSQLKQVYEENPLALWKPDH-PRAKIELIEN-RIIRLKPMMYTEEDREEFKIQIKELLGLNLIRNSNSPHNSPAFMVRKRAEQVRGKARMVINYRELNKYTKFDGYFLPNKEVLINLVKNKTYYSKFDCKSGFWQIKMEENSIPYTAFSTPQGHYEWLVMPFGLKNAPQIFQSRM 597
            E+++LI++        K + I+  L +V  ENP+   K     +A I+LI+  ++IR+KPM Y+ +DRE F  QIKELL L LI  S S H SPAF+V   AE+ RGK RMV+NY+ +N+ T  D + LPN + L+ L++ K+ +S FDCKSGFWQ+ ++E S   TAF+ PQGH++W V+PFGLK AP IFQ  M
Sbjct:  193 ERYFLITE--------KYQKIEQLLDKVCSENPIDPIKSKQWMKASIKLIDPLKVIRVKPMSYSPQDREGFAKQIKELLDLGLIIPSKSQHMSPAFLVENEAERRRGKKRMVVNYKAINQATIGDSHNLPNMQELLTLLRGKSIFSSFDCKSGFWQVVLDEESQKLTAFTCPQGHFQWKVVPFGLKQAPSIFQRHM 380          
BLAST of CX077860 vs. ExPASy Swiss-Prot
Match: POL_COYMV (Putative polyprotein OS=Commelina yellow mottle virus PE=4 SV=2)

HSP 1 Score: 150.984 bits (380), Expect = 5.055e-36
Identity = 87/192 (45.31%), Postives = 113/192 (58.85%), Query Frame = -2
Query:    1 KSQLKQVYE-----ENPLALWKPDHPRAKIELIENRI-IRLKPMMY-TEEDREEFKIQIKELLGLNLIRNSNSPHNSPAFMVRKRAE-------QVRGKARMVINYRELNKYTKFDGYFLPNKEVLINLVKNKTYYSKFDCKSGFWQIKMEENSIPYTAFSTPQGHYEWLVMPFGLKNAPQIFQSRMDKIFR 534
            K  LK++ E     ENP+  WK +  + K+ +I   I I  +P+ + T  D E    QI  LL + +IR S S H S AF+VR   E       + +GK RMV NY+ LN+ T+ D Y LP    +I+ V     YSKFD KSGFWQ+ MEE S+P+TAF      YEWLVMPFGLKNAP IFQ +MD +F+
Sbjct: 1364 KDLLKEMKEMKYIGENPMEFWKNNKIKCKLNIINPDIKIMGRPIKHVTPGDEEAMTRQINLLLQMKVIRPSESKHRSTAFIVRSGTEIDPITGKEKKGKERMVFNYKLLNENTESDQYSLPGINTIISKVGRSKIYSKFDLKSGFWQVAMEEESVPWTAFLAGNKLYEWLVMPFGLKNAPAIFQRKMDNVFK 1555          
BLAST of CX077860 vs. ExPASy Swiss-Prot
Match: POL_SOCMV (Enzymatic polyprotein OS=Soybean chlorotic mottle virus GN=ORF V PE=3 SV=2)

HSP 1 Score: 144.436 bits (363), Expect = 4.732e-34
Identity = 81/184 (44.02%), Postives = 113/184 (61.41%), Query Frame = -2
Query:   10 ETIKSQLKQVYEENPLALWKPDHP-----RAKIELIENRIIRLKPMMYTEEDREEFKIQIKELLGLNLIRNSNSPHNSPAFMVRKRAEQVRGKARMVINYRELNKYTKFDGYFLPNKEVLINLVKNKTYYSKFDCKSGFWQIKMEENSIPYTAFS-TPQGHYEWLVMPFGLKNAPQIFQSRMDK 543
            +TI+ QL++V  E+PL   K  +      R K  L E  +    P  YT  D +EFK + ++LL   LIR S SPH++PAF V    E  RGK RMVINY+++N+ T  D Y LP K+ ++  +K   ++S  D KSG++Q+++ EN+ P TAFS  PQ HYEW V+ FGLK AP I+Q  MD+
Sbjct:  166 KTIEEQLEEVCSEHPLDETKNKNGLLIEIRLKDPLQEINVTNRIP--YTIRDVQEFKEECEDLLKKGLIRESQSPHSAPAFYVENHNEIKRGKRRMVINYKKMNEATIGDSYKLPRKDFILEKIKGSLWFSSLDAKSGYYQLRLHENTKPLTAFSCPPQKHYEWNVLSFGLKQAPSIYQRFMDQ 347          
BLAST of CX077860 vs. ExPASy Swiss-Prot
Match: POL_CYLCV (Enzymatic polyprotein OS=Cestrum yellow leaf curling virus GN=ORF V PE=3 SV=1)

HSP 1 Score: 136.732 bits (343), Expect = 9.866e-32
Identity = 75/179 (41.90%), Postives = 106/179 (59.22%), Query Frame = -2
Query:   10 IKSQLKQVYEENPLALWKPDHPRAKIELI--ENRIIRLKPMMYTEEDREEFKIQIKELLGLNLIRNSNSPHNSPAFMVRKRAEQVRGKARMVINYRELNKYTKFDGYFLPNKEVLINLVKNKTYYSKFDCKSGFWQIKMEENSIPYTAFS-TPQGHYEWLVMPFGLKNAPQIFQSRMDK 537
            + S L++V +ENPL +   +    KIELI  E  +     + Y+  D  EF  +  +L+   +I  S SPH++PAF V    E  R K RMVINY+ LNK T  + + LP  + ++  VK   ++S  D KSG+WQ+++   S P TAFS  PQ HY+W V+PFGLK AP I+Q+ MDK
Sbjct:  168 VSSTLEEVCDENPLDVKNTNTELVKIELINPEKEVNVPNNIPYSLRDINEFSQECADLVRKGIIEESKSPHSAPAFYVENHNEIKRKKRRMVINYKALNKATIGNAHKLPRIDSILTKVKGSNWFSTLDAKSGYWQLRLHPQSKPLTAFSCPPQKHYQWNVLPFGLKQAPGIYQNFMDK 346          
The following BLAST results are available for this feature:
BLAST of CX077860 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
POL_CAMVS1.515e-4851.89Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVE1.979e-4851.89Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVC1.979e-4851.89Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVD9.820e-4851.35Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CAMVN2.857e-4750.81Enzymatic polyprotein OS=Cauliflower mosaic virus ... [more]
POL_CERV1.016e-4451.65Enzymatic polyprotein OS=Carnation etched ring vir... [more]
POL_FMVD1.917e-4347.45Enzymatic polyprotein OS=Figwort mosaic virus (str... [more]
POL_COYMV5.055e-3645.31Putative polyprotein OS=Commelina yellow mottle vi... [more]
POL_SOCMV4.732e-3444.02Enzymatic polyprotein OS=Soybean chlorotic mottle ... [more]
POL_CYLCV9.866e-3241.90Enzymatic polyprotein OS=Cestrum yellow leaf curli... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5D12_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5D12-G23-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077860 ID=CX077860; Name=CX077860; organism=Citrus sinensis; type=EST; length=649bp
TCTAAATATTTTATCCATTCTACTTTGGAATATTTGTGGAGCATTTTTTA
ATCCAAAGGGCATTACTAACCATTCATAATGTCCTTGTGGAGTACTAAAT
GCTGTATAAGGAATACTATTTTCTTCCATTTTTATTTGCCAGAAACCTGA
TTTACAGTCAAACTTTGAATAATAAGTTTTATTTTTTACTAAATTAATTA
GAACTTCTTTATTTGGCAAAAAATATCCATCAAATTTGGTATATTTGTTT
AGTTCTCTATAGTTTATTACCATTCTAGCTTTCCCTCTAACTTGTTCTGC
TCTTTTTCTAACCATGAAAGCTGGGCTGTTGTGTGGACTATTACTATTGC
GTATTAAATTTAATCCTAATAATTCTTTTATCTGGATTTTAAATTCTTCT
CGGTCTTCCTCTGTGTACATCATAGGTTTAAGTCTTATGATTCTATTTTC
TATTAATTCTATTTTTGCTCTGGGGTGATCTGGTTTCCATAAGGCTAATG
GATTTTCTTCATAGACTTGTTTAAGTTGGGATTTTATTGTTTCTAATTTT
ATATTTATGTTATAACTCTGTCCTTTTGAAATTAAATAATGTTTTTCATA
AATTGTCTTATCACCACGCGAGGCTGGCTGAACTCGATAAGGGCGAAAT
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