CX077857

Overview
NameCX077857
Unique NameCX077857
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length817
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077857 vs. ExPASy Swiss-Prot
Match: CCD51_ORYSJ (Cyclin-D5-1 OS=Oryza sativa subsp. japonica GN=CYCD5-1 PE=2 SV=2)

HSP 1 Score: 149.443 bits (376), Expect = 2.193e-35
Identity = 98/270 (36.30%), Postives = 134/270 (49.63%), Query Frame = 2
Query:   65 LMCQEDESCLSQESGDEKSCDGSYYCD-----PCCFVLGNGDEEFIEK----LVEKETDFGSKGYGFSHD------------CSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKL-WAIRLLSVACLSLAAKMEECQVPALSEFQV----DDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPSXXXXXXXXXXSDGQLTRETIELKMN 796
            LMCQED + L  + G      G    D            + DEE +E+    LV KE+ F S     S               +     W   AR   ++WI   R  FGF  RTAYL++ + DRF  +R ID   + WA RLL+VAC+SLAAKMEE + PALSEF+     D ++F    I+RMELLVLSTLDW+M ++TPF +L     +L            +  LI +  +  ++++HRPS          + G LTRE +E KM+
Sbjct:   15 LMCQEDSTDLDDDGGGGGCFAGDGRADLLLVYNAAAAADDEDEEEVEEYMDHLVSKESSFCSSSSSTSSSSCCFSDAGGESAAAAAPMDWFALARRATVKWILETRGCFGFCHRTAYLAIAYFDRFCLRRCIDRSVMPWAARLLAVACVSLAAKMEEYRAPALSEFRAGVGDDGYEFSCVCIRRMELLVLSTLDWRMAAVTPFDYLPCLSSRLRRHVGGGGGAGASAALIFSAAEAASVLDHRPSTVAAAAVLAATHGALTREALESKMS 284          
BLAST of CX077857 vs. ExPASy Swiss-Prot
Match: CCD53_ORYSJ (Cyclin-D5-3 OS=Oryza sativa subsp. japonica GN=CYCD5-3 PE=2 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 9.212e-34
Identity = 91/228 (39.91%), Postives = 135/228 (59.21%), Query Frame = 2
Query:   65 LMCQEDESCL-SQESGDEKSCDGS------YYCDPCCFVLGNGDEEFIEKLVEKETDFGSKGYGFSHDCSTR--TQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPS 721
            L+C+ED + L S +  D+    GS         D    +L + D+E++  ++ KE   G  G G   D       + W+K AR   + WI    A F F  +TAY++V +LDRFL++R +D  K WA++LLSVACLSLAAK+EE + P L EF++D +D  +  + RMELLVL+TL W+M + TPF++L+ F  K   + R K +V RA+E I    KVI+ + ++PS
Sbjct:   18 LICREDGNDLFSADPADDDGGGGSGGDWELSIADDDHVLLMDRDDEYLALMLSKERCAGGGGGGERGDEEEEEMVEEWMKNARAWCVGWIVKTNAGFRFSLKTAYVAVTYLDRFLARRCVDRDKEWALQLLSVACLSLAAKVEERRPPRLPEFKLDMYDCAS--LMRMELLVLTTLKWQMITETPFSYLNCFTAKFRHDER-KAIVLRAIECIFASIKVISSVGYQPS 242          
BLAST of CX077857 vs. ExPASy Swiss-Prot
Match: CCD52_ORYSJ (Cyclin-D5-2 OS=Oryza sativa subsp. japonica GN=CYCD5-2 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 5.971e-33
Identity = 100/276 (36.23%), Postives = 138/276 (50.00%), Query Frame = 2
Query:   65 LMCQEDESCLSQESGDEKSCDGSYYCDPCCFVLGNGDEE---FIEKLVEKETDFGSKGYGFSHDCSTRTQ--------SWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSID-DGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDDFD-FENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKL------------CGECRPKELVSRAVELIMTITKVINLMNHRPSXXXXXXXXXXSDG-QLTRETIELKM-NVFPLC 811
            L CQED + L     D+   DG  +         + +EE   ++E++V KE  F         D +             W + ARL A++WI   R  FGF  RTAYL++ + DRF  +R +D +   WA RLLS+AC+S+AAKMEE Q PALSEF       F +  I+RMELLVLSTL W+MG++TPF FL  F  +L             G      +   AV  I    +  +++++RPS          S G  LT+E +E KM N+ P C
Sbjct:   17 LTCQEDGADLGDGVVDDDD-DGDVFLFYNAVAAADDEEEEEEYVEQMVSKEASFCCSSSSSLFDAAAGDGYGDGDGDGDWFRQARLAAVKWILETRGYFGFGHRTAYLAIAYFDRFCLRRRVDREAMPWAARLLSIACVSVAAKMEEYQSPALSEFDAGGGRVFCSDSIRRMELLVLSTLGWRMGAVTPFDFLPCFSSRLHRHHHGGAGAAGHGAAAAARVALNAVGFIFATAEAGSVLDYRPSTVAAAAILAASYGAPLTKEALESKMSNLSPSC 291          
BLAST of CX077857 vs. ExPASy Swiss-Prot
Match: CCD51_ARATH (Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYCD5-1 PE=2 SV=2)

HSP 1 Score: 139.813 bits (351), Expect = 1.737e-32
Identity = 101/252 (40.08%), Postives = 141/252 (55.95%), Query Frame = 2
Query:   68 MCQEDESCLSQESGDEKSCDGSYYCDPCCFVLGNGDEEFIEKLVEKETDFGSKGYGFSHDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSI--DDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVD-DFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECR--PKELV-SRAVELIMTITKVINLMNHR-----PSXXXXXXXXXXSDGQLTRETIELK 790
            +C E ES L+++  D+++ + S   +P  F     DE+++  LV KE         F    S  T S     RL AI+WI   R  FGFQ +TAY+++ + D FL KR I     + WA+RLLSVACLSLAAKMEE  VP LS++  D DF F+  VI++ ELL+LSTLDWKM  ITPF + +YF+ K+  +     K+LV  R+ + ++ +TK I+   +R                 SD +LTRE I  K
Sbjct:   12 LCHESESSLNED--DDETIERSDKQEPH-FTTTIDDEDYVADLVLKEN------LRFETLPSKTTSS---SDRLIAIDWILTTRTRFGFQHQTAYIAISYFDLFLHKRFIGLQKDETWAMRLLSVACLSLAAKMEERIVPGLSQYPQDHDFVFKPDVIRKTELLILSTLDWKMNLITPFHYFNYFLAKISQDNHSVSKDLVLLRSSDSLLALTKEISFTEYRQFVVAAVTTLLASSSTSSDIRLTREEIANK 251          
BLAST of CX077857 vs. ExPASy Swiss-Prot
Match: CCD42_ORYSJ (Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYCD4-2 PE=2 SV=2)

HSP 1 Score: 133.65 bits (335), Expect = 1.245e-30
Identity = 78/191 (40.84%), Postives = 113/191 (59.16%), Query Frame = 2
Query:  176 EEFIEKLVEKE------TDFGSKGYGFSHDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDD--FDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKL-CGECRPKELVSRAVELIMTITKVINLMNHRPS 721
            EE +  LVE+E       D+G +  G   D   R +S       +AI WI+     + F   TAYL+V++LDRFLS+  + +G+ W  +LLSVACLS+AAKMEE  VP   + Q+ +  F FE + I RMELLVL+ L+W+M ++TPF+++ YF+ KL  G   P+  + R+ ELI+ I      +  RPS
Sbjct:   75 EECVASLVEREQAHMPRADYGERLRGGGGDVDLRVRS-------EAIGWIWEVYTYYNFSSVTAYLAVNYLDRFLSQYELPEGRDWMTQLLSVACLSIAAKMEETVVPQCLDLQIGEPRFLFEVETIHRMELLVLTNLNWRMQAVTPFSYIDYFLRKLNSGNAAPRSWLLRSSELILRIAAGTGFLEFRPS 258          
BLAST of CX077857 vs. ExPASy Swiss-Prot
Match: CCD41_ORYSJ (Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYCD4-1 PE=2 SV=2)

HSP 1 Score: 131.724 bits (330), Expect = 4.731e-30
Identity = 92/245 (37.55%), Postives = 126/245 (51.43%), Query Frame = 2
Query:   65 LMCQEDESCLSQESGDEKSCDGSYYCD-----------PCCFVLGNG----DEEFIEKLVEKETDFGSK--------GYGFSHDCSTRTQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDD--FDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPK-ELVSRAVELIMTITKVINLMNHRPS 721
            L+C ED S +    G+E+  +                 PC  V G       EE + +LVE E D   +          G   D   R        R+DAI+WI+   + + F   TA L+V++LDRFLS   + DGK W  +LL+VACLSLAAKMEE  VP   + QV +  + FE K IQRMELLVLSTL W+M ++TPF+++ YF+ +L G   P       + ELI+ I +    +  RPS
Sbjct:   14 LLCAEDSSSVLGFGGEEEEEEEDVVAGKRARCAGPPPPPCVDVAGVDFAVPSEECVARLVETEADHMPREDYAERLRAGGGDGDLDLRV-------RMDAIDWIWKVHSYYSFAPLTACLAVNYLDRFLSLYQLPDGKDWMTQLLAVACLSLAAKMEETDVPQSLDLQVGEERYVFEAKTIQRMELLVLSTLKWRMQAVTPFSYVDYFLRELNGGDPPSGRSALLSSELILCIARGTECLGFRPS 251          
BLAST of CX077857 vs. ExPASy Swiss-Prot
Match: CCD41_ARATH (Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 6.832e-29
Identity = 79/189 (41.80%), Postives = 116/189 (61.38%), Query Frame = 2
Query:  176 EEFIEKLVEKETDFGSKGYGFSHDCSTRTQSW---LKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDD--FDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKL--CGECRPKELVSRAVELIMTITKVINLMNHRPS 721
            EE I ++VEKE     K +  S D   R +S    L   R DA+ WI+    +  F      L++++LDRFLS   +  GK W ++LL+VACLSLAAK+EE +VP L + QV D  F FE K +QRMELLVL+ L W++ +ITP +++ YF+ K+  C +     L+SR++++I + TK I+ +  RPS
Sbjct:   44 EEIIMEMVEKE-----KQHLPSDDYIKRLRSGDLDLNVGRRDALNWIWKACEVHQFGPLCFCLAMNYLDRFLSVHDLPSGKGWILQLLAVACLSLAAKIEETEVPMLIDLQVGDPQFVFEAKSVQRMELLVLNKLKWRLRAITPCSYIRYFLRKMSKCDQEPSNTLISRSLQVIASTTKGIDFLEFRPS 227          
BLAST of CX077857 vs. ExPASy Swiss-Prot
Match: CCD11_ORYSJ (Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYCD1-1 PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.596e-28
Identity = 65/144 (45.14%), Postives = 96/144 (66.67%), Query Frame = 2
Query:  290 DAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDD--FDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVS-RAVELIMTITKVINLMNH 712
            +++ WI   R++ GFQ  TAYL+V ++DRF+S RS+ D   WA +LL VACLSLAAKMEE   P L + Q++   F FE + IQRMEL+VL  LDW++ S+TPFAF+ +F  K+    R   +++ RA ++I++    +  +NH
Sbjct:  127 ESVSWILKVRSVHGFQPATAYLAVSYMDRFMSSRSLPDHG-WASQLLCVACLSLAAKMEESSAPPLLDLQIEGTRFIFEPRTIQRMELIVLVELDWRLRSVTPFAFVDFFACKVGSSGRSSRILALRACQIILSAIHELEFLNH 269          
BLAST of CX077857 vs. ExPASy Swiss-Prot
Match: CCD11_ARATH (Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=1 SV=3)

HSP 1 Score: 125.176 bits (313), Expect = 4.428e-28
Identity = 74/169 (43.79%), Postives = 106/169 (62.72%), Query Frame = 2
Query:  242 HDCSTR--TQSWLKCARLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVD--DFDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKE-----LVSRAVELIMTITKVINLMNHRPS 721
            HD  +R  T+S    AR D++ WI   +A + FQ  TAYL+V+++DRFL  R + +   W ++LL+VACLSLAAKMEE  VP+L +FQV    + FE K I+RMELLVLS LDW++ S+TPF F+ +F  K+     P        +S A E+I++  K  + + + PS
Sbjct:   66 HDYLSRFQTRSLDASAREDSVAWILKVQAYYNFQPLTAYLAVNYMDRFLYARRLPETSGWPMQLLAVACLSLAAKMEEILVPSLFDFQVAGVKYLFEAKTIKRMELLVLSVLDWRLRSVTPFDFISFFAYKI----DPSGTFLGFFISHATEIILSNIKEASFLEYWPS 230          
BLAST of CX077857 vs. ExPASy Swiss-Prot
Match: CCD21_ARATH (Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=1 SV=3)

HSP 1 Score: 122.094 bits (305), Expect = 3.749e-27
Identity = 64/148 (43.24%), Postives = 97/148 (65.54%), Query Frame = 2
Query:  284 RLDAIEWIFNKRAMFGFQFRTAYLSVDFLDRFLSKRSIDDGKLWAIRLLSVACLSLAAKMEECQVPALSEFQVDD--FDFENKVIQRMELLVLSTLDWKMGSITPFAFLHYFMIKLCGECRPKELVSRAVELIMTITKVINLMNHRPS 721
            R  A++WI    A + F      LS+++LDRFL+   +   K WA +LL+V+CLSLA+KMEE  VP + + QV+D  F FE K I+RMELLV++TL+W++ ++TPF+F+ YF+ K+ G    + L+ R+   I+  TK I  ++ RPS
Sbjct:   97 RNQALDWILKVCAHYHFGHLCICLSMNYLDRFLTSYELPKDKDWAAQLLAVSCLSLASKMEETDVPHIVDLQVEDPKFVFEAKTIKRMELLVVTTLNWRLQALTPFSFIDYFVDKISGHV-SENLIYRSSRFILNTTKAIEFLDFRPS 243          
The following BLAST results are available for this feature:
BLAST of CX077857 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
CCD51_ORYSJ2.193e-3536.30Cyclin-D5-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD53_ORYSJ9.212e-3439.91Cyclin-D5-3 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD52_ORYSJ5.971e-3336.23Cyclin-D5-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD51_ARATH1.737e-3240.08Cyclin-D5-1 OS=Arabidopsis thaliana GN=CYCD5-1 PE=... [more]
CCD42_ORYSJ1.245e-3040.84Cyclin-D4-2 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD41_ORYSJ4.731e-3037.55Cyclin-D4-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD41_ARATH6.832e-2941.80Cyclin-D4-1 OS=Arabidopsis thaliana GN=CYCD4-1 PE=... [more]
CCD11_ORYSJ2.596e-2845.14Cyclin-D1-1 OS=Oryza sativa subsp. japonica GN=CYC... [more]
CCD11_ARATH4.428e-2843.79Cyclin-D1-1 OS=Arabidopsis thaliana GN=CYCD1-1 PE=... [more]
CCD21_ARATH3.749e-2743.24Cyclin-D2-1 OS=Arabidopsis thaliana GN=CYCD2-1 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5D11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5D11-G21-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077857 ID=CX077857; Name=CX077857; organism=Citrus sinensis; type=EST; length=817bp
CATTCACGAGAAGTAGAAAACAACAATGGGAGACTCTGATGATGGTTCAT
TTTCTGTGTCTAGTCTTATGTGTCAAGAAGATGAATCTTGTTTGAGTCAA
GAATCTGGAGATGAGAAAAGCTGTGACGGGAGCTATTATTGTGACCCATG
TTGTTTTGTTTTGGGAAATGGGGATGAAGAGTTCATAGAAAAGTTGGTTG
AAAAAGAGACTGATTTTGGATCCAAAGGTTATGGCTTTTCTCATGATTGT
TCTACTAGAACCCAGAGCTGGCTCAAATGTGCTCGCTTGGATGCCATTGA
ATGGATATTCAACAAAAGGGCTATGTTTGGGTTCCAGTTCCGCACAGCTT
ATCTTTCTGTGGATTTCCTTGACCGGTTTCTTTCAAAGCGATCCATTGAT
GATGGGAAATTGTGGGCCATTCGATTGCTATCAGTGGCATGTTTATCATT
GGCAGCCAAGATGGAGGAATGCCAAGTGCCAGCTTTATCAGAATTTCAAG
TGGACGATTTTGATTTTGAGAACAAGGTGATTCAGAGAATGGAGCTATTA
GTATTGAGTACATTGGACTGGAAAATGGGTTCAATCACTCCTTTTGCTTT
TCTGCATTACTTCATGATTAAATTATGCGGTGAATGTAGACCAAAAGAAT
TAGTCTCTAGAGCCGTGGAACTTATTATGACTATAACAAAAGTGATTAAT
TTGATGAATCATCGACCATCTGCCATTGCGGCAGCTGCAGTTTTAGCTGC
ATCTGATGGTCAATTGACAAGAGAAACCATCGAGCTCAAGATGAATGTAT
TCCCATTGTGTGGTTCT
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