CX077790

Overview
NameCX077790
Unique NameCX077790
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077790 vs. ExPASy Swiss-Prot
Match: NIPA4_HUMAN (Magnesium transporter NIPA4 OS=Homo sapiens GN=NIPAL4 PE=1 SV=3)

HSP 1 Score: 84.7297 bits (208), Expect = 4.942e-16
Identity = 38/81 (46.91%), Postives = 53/81 (65.43%), Query Frame = -3
Query:  445 QMNYLNMALDTFNTAVVFPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFFFHKTKDLGDGSSLTPFM 687
            Q+N+LN ALD FNT++VFPIYYV FT++ + +S+I+FK+W   +   I   + GFVTI+ G F  H  KDL    +  P M
Sbjct:  340 QVNFLNRALDIFNTSLVFPIYYVFFTTVVVTSSIILFKEWYSMSAVDIAGTLSGFVTIILGVFMLHAFKDLDISCASLPHM 420          
BLAST of CX077790 vs. ExPASy Swiss-Prot
Match: NIPA4_MOUSE (Magnesium transporter NIPA4 OS=Mus musculus GN=Nipal4 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 6.454e-16
Identity = 36/71 (50.70%), Postives = 51/71 (71.83%), Query Frame = -3
Query:  475 QMNYLNMALDTFNTAVVFPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFFFHKTKDL 687
            Q+N+LN ALD FNT++VFPIYYV FT++ + +S+++FK+W   +   IV  + GFVTI+ G F  H  KDL
Sbjct:  280 QVNFLNRALDIFNTSLVFPIYYVFFTTVVVASSIVLFKEWYTMSAVDIVGTLSGFVTIILGVFMLHAFKDL 350          
BLAST of CX077790 vs. ExPASy Swiss-Prot
Match: NIPA2_BOVIN (Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.184e-15
Identity = 42/96 (43.75%), Postives = 55/96 (57.29%), Query Frame = -3
Query:  400 QMNYLNMALDTFNTAVVFPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFFFHKTKDLGDGSSLTPFMSLRLSKHAGNDDLES 687
            Q+NYLN ALD FNT++V PIYYV FT+  I  S I+FK+W       ++  + GF TI+ G F  H  KD+    S  P +S R  + A N  L S
Sbjct:  232 QINYLNRALDIFNTSIVTPIYYVFFTTSVITCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKDVSFSLSSLP-VSFRKDEKAVNGSLSS 326          
BLAST of CX077790 vs. ExPASy Swiss-Prot
Match: NIPA2_MOUSE (Magnesium transporter NIPA2 OS=Mus musculus GN=Nipa2 PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.217e-14
Identity = 40/96 (41.67%), Postives = 56/96 (58.33%), Query Frame = -3
Query:  400 QMNYLNMALDTFNTAVVFPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFFFHKTKDLGDGSSLTPFMSLRLSKHAGNDDLES 687
            Q+NYLN ALD FNT++V PIYYV FT+  +  S I+FK+W       ++  + GF TI+ G F  H  KD+    +  P +S R  + A N +L S
Sbjct:  232 QINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKDVSFSLASLP-VSFRKDEKAMNGNLSS 326          
BLAST of CX077790 vs. ExPASy Swiss-Prot
Match: NIPA2_PONAB (Magnesium transporter NIPA2 OS=Pongo abelii GN=NIPA2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = -3
Query:  400 QMNYLNMALDTFNTAVVFPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFFFHKTKDLGDGSSLTPFMSLRLSKHAGNDDLES 687
            Q+NYLN ALD FNT++V PIYYV FT+  +  S I+FK+W       ++  + GF TI+ G F  H  KD+    +  P +S R  + A N +L +
Sbjct:  232 QINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKDVSFSLASLP-VSFRKDEKAMNGNLSN 326          
BLAST of CX077790 vs. ExPASy Swiss-Prot
Match: NIPA2_HUMAN (Magnesium transporter NIPA2 OS=Homo sapiens GN=NIPA2 PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.712e-14
Identity = 39/96 (40.62%), Postives = 56/96 (58.33%), Query Frame = -3
Query:  400 QMNYLNMALDTFNTAVVFPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFFFHKTKDLGDGSSLTPFMSLRLSKHAGNDDLES 687
            Q+NYLN ALD FNT++V PIYYV FT+  +  S I+FK+W       ++  + GF TI+ G F  H  KD+    +  P +S R  + A N +L +
Sbjct:  232 QINYLNRALDIFNTSIVTPIYYVFFTTSVLTCSAILFKEWQDMPVDDVIGTLSGFFTIIVGIFLLHAFKDVSFSLASLP-VSFRKDEKAMNGNLSN 326          
BLAST of CX077790 vs. ExPASy Swiss-Prot
Match: NIPA3_PONAB (Magnesium transporter NIPA3 OS=Pongo abelii GN=NIPAL1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.030e-13
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = -3
Query:  478 QMNYLNMALDTFNTAVVFPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFFFHKTKD 687
            Q+NYLN ALDTFNT++V PIYYV FTS+ +  S I+F++W       I+  + GF TI+ G F  H  K+
Sbjct:  290 QINYLNKALDTFNTSIVTPIYYVFFTSMVVTCSAILFQEWYGMTAGDIIGTLSGFFTIIIGIFLLHAFKN 359          
BLAST of CX077790 vs. ExPASy Swiss-Prot
Match: NIPA3_HUMAN (Magnesium transporter NIPA3 OS=Homo sapiens GN=NIPAL1 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.758e-13
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = -3
Query:  478 QMNYLNMALDTFNTAVVFPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFFFHKTKD 687
            Q+NYLN ALDTFNT++V PIYYV FTS+ +  S I+F++W       I+  + GF TI+ G F  H  K+
Sbjct:  290 QINYLNKALDTFNTSLVTPIYYVFFTSMVVTCSAILFQEWYGMTAGDIIGTLSGFFTIIIGIFLLHAFKN 359          
BLAST of CX077790 vs. ExPASy Swiss-Prot
Match: NIPA3_MOUSE (Magnesium transporter NIPA3 OS=Mus musculus GN=Nipal1 PE=1 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 2.296e-13
Identity = 34/70 (48.57%), Postives = 46/70 (65.71%), Query Frame = -3
Query:  478 QMNYLNMALDTFNTAVVFPIYYVMFTSLTILASVIMFKDWDRQNPTQIVTEMCGFVTILAGTFFFHKTKD 687
            Q+NYLN ALDTFNT++V PIYYV FTS+ +  S I+F++W       I+  + GF TI+ G F  H  K+
Sbjct:  290 QINYLNKALDTFNTSLVTPIYYVFFTSMVVTCSAILFQEWYGMKAGDIIGTLSGFFTIINGIFLLHAFKN 359          
The following BLAST results are available for this feature:
BLAST of CX077790 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 9
Match NameE-valueIdentityDescription
NIPA4_HUMAN4.942e-1646.91Magnesium transporter NIPA4 OS=Homo sapiens GN=NIP... [more]
NIPA4_MOUSE6.454e-1650.70Magnesium transporter NIPA4 OS=Mus musculus GN=Nip... [more]
NIPA2_BOVIN4.184e-1543.75Magnesium transporter NIPA2 OS=Bos taurus GN=NIPA2... [more]
NIPA2_MOUSE1.217e-1441.67Magnesium transporter NIPA2 OS=Mus musculus GN=Nip... [more]
NIPA2_PONAB2.712e-1440.63Magnesium transporter NIPA2 OS=Pongo abelii GN=NIP... [more]
NIPA2_HUMAN2.712e-1440.63Magnesium transporter NIPA2 OS=Homo sapiens GN=NIP... [more]
NIPA3_PONAB1.030e-1348.57Magnesium transporter NIPA3 OS=Pongo abelii GN=NIP... [more]
NIPA3_HUMAN1.758e-1348.57Magnesium transporter NIPA3 OS=Homo sapiens GN=NIP... [more]
NIPA3_MOUSE2.296e-1348.57Magnesium transporter NIPA3 OS=Mus musculus GN=Nip... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_5A09_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5A09-A17-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077790 ID=CX077790; Name=CX077790; organism=Citrus sinensis; type=EST; length=689bp
TTTTTTTTTTTTTTTTTGGGAAAATATCCACTGATTCTCAGCAAAATGAA
GCAAGTGATACATCATCTGTAGGAAGAATACAGTATACAACCAACAGGCT
CAAAATTACATTTGGCAATCCCTTCTGTATGCACCAGGGAGAAACGGTAT
AAAATATGCAGTAACTGAAATCTAGGAATCTCTTCGTGAAGCCGAAACAG
GGGACAAGCAAAACAAAAATATCATCCTCTACCGTTTCCGGTAAAAAGGA
TCACCATTAAAATGATTGGATCCAAATACAAGTTGATGTCAGTTCCTCCC
CAGAGTTTGATGTTTGTATGAATGGCAAAAATGAAAGCAAAGAATATATG
AATATCACGGTGTTCTCAGTGACTCCTGCCGCCTAAAAGGGATGCCCTCG
GATTCCAAGTCGTCGTTACCCGCATGCTTCGATAATCGTAATGACATAAA
CGGTGTCAAACTTGAACCATCACCCAGGTCCTTGGTTTTGTGAAAAAAAA
AAGTTCCTGCAAGGATTGTAACAAATCCACACATTTCCGTGACAATCTGG
GTTGGATTCTGCCTATCCCAGTCCTTAAACATGATCACGCTAGCTAGAAT
GGTAAGTGATGTGAACATCACATAGTATATGGGAAAGACAACTGCCGTGT
TAAAAGTATCAAGCGCCATGTTCAGATAATTCATTTGGG
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