CX077789
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX077789 vs. ExPASy Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1) HSP 1 Score: 342.813 bits (878), Expect = 1.317e-93 Identity = 178/260 (68.46%), Postives = 210/260 (80.77%), Query Frame = 3 Query: 30 MATLAQQFTG-LRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLCLSNRQAMADSQ 806 MA+LAQQ G LRCPP+S++ LS+ S K + IVSAVA+SNA+TRER++L QLFE+AYERCR APMEGVSFT+++FH+AL+KYDFNSE+G++VKGTVFCTD GALVDITAKSSAYLP EACI++IK+VEEAGI+PG++EEFVIIGENEADDSL+LSLR IQYELAWERCRQLQ+ED LRGFVPFSQISSKS+AEELL K++PLKFVEVDEEQSRL +SNR+AMADSQ Sbjct: 1 MASLAQQLAGGLRCPPLSNSNLSKPFS-----PKHTLKPRFSPIVSAVAVSNAQTRERQKLKQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDITAKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEEQSRLVMSNRKAMADSQ 255
BLAST of CX077789 vs. ExPASy Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803) GN=rps1A PE=3 SV=1) HSP 1 Score: 153.68 bits (387), Expect = 1.133e-36 Identity = 80/179 (44.69%), Postives = 114/179 (63.69%), Query Frame = 3 Query: 264 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLCLSNRQAMAD 800 + FTLE+F + L+KYD++ G V GTVF ++RGAL+DI AK++AY+P QE I+++ EE + P EF I+ + D L LS+R I+Y AWER RQLQ+ED LRGF+P S IS++ E+L+G+DLPLKF+EVDEE++RL LS+R+A+ + Sbjct: 10 IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVDDPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVE 187
BLAST of CX077789 vs. ExPASy Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4) HSP 1 Score: 147.517 bits (371), Expect = 8.120e-35 Identity = 77/183 (42.08%), Postives = 114/183 (62.30%), Query Frame = 3 Query: 252 PMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLCLSNRQAMAD 800 P + FT E+F + L++YD++ G V GTVF + RGAL+DI AK++A+LP QE I++++ EE + P EF I+ + D L LS+R I+Y AWER RQLQ+ED LRGF+P S IS++ E+L+G++LPLKF+EVDE+++RL LS+R+A+ + Sbjct: 7 PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSINRVESPEEV-LQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRALVE 188
BLAST of CX077789 vs. ExPASy Swiss-Prot
Match: RR1_PORYE (30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis GN=rps1 PE=3 SV=2) HSP 1 Score: 91.2781 bits (225), Expect = 6.906e-18 Identity = 57/176 (32.39%), Postives = 88/176 (50.00%), Query Frame = 3 Query: 270 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK-IKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLCLSNRQAM 794 FT F + L+KY ++ LG V GT+F + G LVDI SAYLP QE ++ + + I EF ++ N L+LS+R ++Y AW+R RQL +ED + GFVP S + + +E+ K + LK + V+E+ + L LS+R+A+ Sbjct: 8 FTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQEVSSNQDLNNFTSLNI--NDTREFFLLDYNIQSKQLILSIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGISGFVPNSHLGNFQKSEQFNNKFIKLKLLNVEEKSNNLILSHRRAL 181
BLAST of CX077789 vs. ExPASy Swiss-Prot
Match: RR1_PORPU (30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea GN=rps1 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 9.019e-18 Identity = 58/177 (32.77%), Postives = 88/177 (49.72%), Query Frame = 3 Query: 267 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH-KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLCLSNRQAM 794 SFT F + L+KY ++ LG V GT+F + G LVDI SAYLP QE + ++ + I EF ++ N L+LS+R ++Y AW+R RQL +ED + GFVP S +++ S K + LK + V+E+ + L LS+R+A+ Sbjct: 7 SFTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPVSAYLPIQEVSSNQELNNFNSLNI--NDTREFFLLDYNVESRQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGISGFVPNSHLNNFSKNTSSTNKFIKLKLLNVEEKSNNLILSHRRAL 181
BLAST of CX077789 vs. ExPASy Swiss-Prot
Match: RS1_SYNE7 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsA PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 7.635e-17 Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = 3 Query: 279 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLCLSNRQA 791 ++F ALE +S+ G V+G V GA +DI K+ A+LP +EA +H + + EA + + EF++I + D + +SLR + E AW R +LQ LR F+P S ++ K + L GK L + F+EV+ +L LS RQA Sbjct: 12 DDFALALEAQSLDSQKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAALHAVLDL-EAHLPKDEELEFLVIRDQNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGVTADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSERQA 181
BLAST of CX077789 vs. ExPASy Swiss-Prot
Match: RS1B_SYNY3 (30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC 6803) GN=rps1b PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14 Identity = 45/174 (25.86%), Postives = 84/174 (48.28%), Query Frame = 3 Query: 267 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLCLSNRQ 788 +F+L+EF AL+K+D+++E G V G + N G VD KS ++P QE + +E++ + +F++ E + + LS R +Q + +WE +L+ LRGF+P S + K + L+G+ L +E +++ ++L L+ R+ Sbjct: 9 AFSLDEFAKALDKHDYHAEKGQTVHGKICQHANEGVYVDFGGKSPGFVPVQELGLRPHAEIEDSFPLDS-AWDFLVTSEQNDEGQVRLSRRQLQIQQSWENLAELEESGKTLEMVVTGTNKGGVVGDVEGLRGFIPRSHLMHKDNMDALVGQVLKAHILEANQDNNKLVLTQRR 181 The following BLAST results are available for this feature:
BLAST of CX077789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 7
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >CX077789 ID=CX077789; Name=CX077789; organism=Citrus sinensis; type=EST; length=807bpback to top |