CX077789

Overview
NameCX077789
Unique NameCX077789
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length807
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077789 vs. ExPASy Swiss-Prot
Match: RR1_SPIOL (30S ribosomal protein S1, chloroplastic OS=Spinacia oleracea GN=RPS1 PE=1 SV=1)

HSP 1 Score: 342.813 bits (878), Expect = 1.317e-93
Identity = 178/260 (68.46%), Postives = 210/260 (80.77%), Query Frame = 3
Query:   30 MATLAQQFTG-LRCPPISHTRLSRRKSITQIQQKLLNSRKNKTIVSAVAISNAETREREELNQLFEEAYERCRTAPMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLCLSNRQAMADSQ 806
            MA+LAQQ  G LRCPP+S++ LS+  S      K     +   IVSAVA+SNA+TRER++L QLFE+AYERCR APMEGVSFT+++FH+AL+KYDFNSE+G++VKGTVFCTD  GALVDITAKSSAYLP  EACI++IK+VEEAGI+PG++EEFVIIGENEADDSL+LSLR IQYELAWERCRQLQ+ED                     LRGFVPFSQISSKS+AEELL K++PLKFVEVDEEQSRL +SNR+AMADSQ
Sbjct:    1 MASLAQQLAGGLRCPPLSNSNLSKPFS-----PKHTLKPRFSPIVSAVAVSNAQTRERQKLKQLFEDAYERCRNAPMEGVSFTIDDFHTALDKYDFNSEMGSRVKGTVFCTDANGALVDITAKSSAYLPLAEACIYRIKNVEEAGIIPGVREEFVIIGENEADDSLILSLRQIQYELAWERCRQLQAEDVVVKGKIVGANKGGVVALVEGLRGFVPFSQISSKSSAEELLEKEIPLKFVEVDEEQSRLVMSNRKAMADSQ 255          
BLAST of CX077789 vs. ExPASy Swiss-Prot
Match: RS1A_SYNY3 (30S ribosomal protein S1 homolog A OS=Synechocystis sp. (strain PCC 6803) GN=rps1A PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 1.133e-36
Identity = 80/179 (44.69%), Postives = 114/179 (63.69%), Query Frame = 3
Query:  264 VSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLCLSNRQAMAD 800
            + FTLE+F + L+KYD++   G  V GTVF  ++RGAL+DI AK++AY+P QE  I+++   EE  + P    EF I+ +   D  L LS+R I+Y  AWER RQLQ+ED                     LRGF+P S IS++   E+L+G+DLPLKF+EVDEE++RL LS+R+A+ +
Sbjct:   10 IGFTLEDFAALLDKYDYHFSPGDIVAGTVFSMESRGALIDIGAKTAAYIPIQEMSINRVDDPEEV-LQPNETREFFILTDENEDGQLTLSIRRIEYMRAWERVRQLQAEDATVRSNVFATNRGGALVRIEGLRGFIPGSHISAREAKEDLVGEDLPLKFLEVDEERNRLVLSHRRALVE 187          
BLAST of CX077789 vs. ExPASy Swiss-Prot
Match: RS1_SYNP6 (30S ribosomal protein S1 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=rpsA PE=1 SV=4)

HSP 1 Score: 147.517 bits (371), Expect = 8.120e-35
Identity = 77/183 (42.08%), Postives = 114/183 (62.30%), Query Frame = 3
Query:  252 PMEGVSFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLCLSNRQAMAD 800
            P   + FT E+F + L++YD++   G  V GTVF  + RGAL+DI AK++A+LP QE  I++++  EE  + P    EF I+ +   D  L LS+R I+Y  AWER RQLQ+ED                     LRGF+P S IS++   E+L+G++LPLKF+EVDE+++RL LS+R+A+ +
Sbjct:    7 PAVDIGFTHEDFAALLDQYDYHFNPGDTVVGTVFNLEPRGALIDIGAKTAAFLPVQEMSINRVESPEEV-LQPSEMREFFILSDENEDGQLTLSIRRIEYMRAWERVRQLQTEDATVRSEVFATNRGGALVRIEGLRGFIPGSHISTRKAKEDLVGEELPLKFLEVDEDRNRLVLSHRRALVE 188          
BLAST of CX077789 vs. ExPASy Swiss-Prot
Match: RR1_PORYE (30S ribosomal protein S1, chloroplastic OS=Porphyra yezoensis GN=rps1 PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 6.906e-18
Identity = 57/176 (32.39%), Postives = 88/176 (50.00%), Query Frame = 3
Query:  270 FTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHK-IKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLCLSNRQAM 794
            FT   F + L+KY ++  LG  V GT+F  +  G LVDI    SAYLP QE   ++ + +     I      EF ++  N     L+LS+R ++Y  AW+R RQL +ED                     + GFVP S + +   +E+   K + LK + V+E+ + L LS+R+A+
Sbjct:    8 FTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPISAYLPIQEVSSNQDLNNFTSLNI--NDTREFFLLDYNIQSKQLILSIRRLEYIRAWKRIRQLLAEDSLLNVMIKGFNKGGMIINLEGISGFVPNSHLGNFQKSEQFNNKFIKLKLLNVEEKSNNLILSHRRAL 181          
BLAST of CX077789 vs. ExPASy Swiss-Prot
Match: RR1_PORPU (30S ribosomal protein S1, chloroplastic OS=Porphyra purpurea GN=rps1 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 9.019e-18
Identity = 58/177 (32.77%), Postives = 88/177 (49.72%), Query Frame = 3
Query:  267 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIH-KIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLCLSNRQAM 794
            SFT   F + L+KY ++  LG  V GT+F  +  G LVDI    SAYLP QE   + ++ +     I      EF ++  N     L+LS+R ++Y  AW+R RQL +ED                     + GFVP S +++ S       K + LK + V+E+ + L LS+R+A+
Sbjct:    7 SFTHRNFAAVLQKYKYDLNLGDIVAGTIFSFELNGVLVDIGTPVSAYLPIQEVSSNQELNNFNSLNI--NDTREFFLLDYNVESRQLILSIRRLEYIRAWKRIRQLLAEDSLLDVRIKGFNKGGMIVNLEGISGFVPNSHLNNFSKNTSSTNKFIKLKLLNVEEKSNNLILSHRRAL 181          
BLAST of CX077789 vs. ExPASy Swiss-Prot
Match: RS1_SYNE7 (30S ribosomal protein S1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpsA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.635e-17
Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = 3
Query:  279 EEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLCLSNRQA 791
            ++F  ALE    +S+ G  V+G V      GA +DI  K+ A+LP +EA +H +  + EA +    + EF++I +   D  + +SLR +  E AW R  +LQ                        LR F+P S ++ K   + L GK L + F+EV+    +L LS RQA
Sbjct:   12 DDFALALEAQSLDSQKGQLVRGKVCEYSTDGAYIDIGGKAPAFLPKREAALHAVLDL-EAHLPKDEELEFLVIRDQNEDGQVTVSLRALALEQAWTRVAELQEGGQTVQVKVTGSNKGGVTADLEGLRAFIPRSHLNEKEDLDSLKGKTLTVAFLEVNRADKKLVLSERQA 181          
BLAST of CX077789 vs. ExPASy Swiss-Prot
Match: RS1B_SYNY3 (30S ribosomal protein S1 homolog B OS=Synechocystis sp. (strain PCC 6803) GN=rps1b PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.592e-14
Identity = 45/174 (25.86%), Postives = 84/174 (48.28%), Query Frame = 3
Query:  267 SFTLEEFHSALEKYDFNSELGTKVKGTVFCTDNRGALVDITAKSSAYLPTQEACIHKIKHVEEAGIVPGLKEEFVIIGENEADDSLVLSLRMIQYELAWERCRQLQSEDXXXXXXXXXXXXXXXXXXXXXLRGFVPFSQISSKSTAEELLGKDLPLKFVEVDEEQSRLCLSNRQ 788
            +F+L+EF  AL+K+D+++E G  V G +    N G  VD   KS  ++P QE  +     +E++  +     +F++  E   +  + LS R +Q + +WE   +L+                        LRGF+P S +  K   + L+G+ L    +E +++ ++L L+ R+
Sbjct:    9 AFSLDEFAKALDKHDYHAEKGQTVHGKICQHANEGVYVDFGGKSPGFVPVQELGLRPHAEIEDSFPLDS-AWDFLVTSEQNDEGQVRLSRRQLQIQQSWENLAELEESGKTLEMVVTGTNKGGVVGDVEGLRGFIPRSHLMHKDNMDALVGQVLKAHILEANQDNNKLVLTQRR 181          
The following BLAST results are available for this feature:
BLAST of CX077789 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
RR1_SPIOL1.317e-9368.4630S ribosomal protein S1, chloroplastic OS=Spinaci... [more]
RS1A_SYNY31.133e-3644.6930S ribosomal protein S1 homolog A OS=Synechocysti... [more]
RS1_SYNP68.120e-3542.0830S ribosomal protein S1 OS=Synechococcus sp. (str... [more]
RR1_PORYE6.906e-1832.3930S ribosomal protein S1, chloroplastic OS=Porphyr... [more]
RR1_PORPU9.019e-1832.7730S ribosomal protein S1, chloroplastic OS=Porphyr... [more]
RS1_SYNE77.635e-1731.5830S ribosomal protein S1 OS=Synechococcus elongatu... [more]
RS1B_SYNY31.592e-1425.8630S ribosomal protein S1 homolog B OS=Synechocysti... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_5A08_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5A08-A15-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077789 ID=CX077789; Name=CX077789; organism=Citrus sinensis; type=EST; length=807bp
AAACTTGGCGAGCTGAAGGGAAAGCAAGAATGGCGACCTTGGCTCAACAG
TTCACAGGACTAAGATGCCCACCAATCTCACACACACGCCTCTCAAGAAG
AAAATCGATTACCCAAATTCAACAAAAGCTTCTGAATAGCAGAAAAAATA
AAACGATAGTGTCAGCAGTGGCAATATCAAATGCAGAGACTAGAGAGAGG
GAGGAGCTCAATCAGCTCTTTGAAGAAGCTTACGAACGGTGTCGTACTGC
TCCCATGGAAGGCGTCTCTTTCACTCTCGAGGAGTTTCACTCTGCTCTTG
AGAAGTATGACTTCAATTCTGAATTAGGTACTAAAGTAAAGGGAACAGTT
TTTTGTACAGATAACCGTGGAGCACTGGTCGATATTACTGCAAAGTCATC
TGCTTATTTGCCTACCCAAGAGGCATGCATTCACAAGATTAAACATGTAG
AAGAGGCAGGTATAGTTCCGGGGTTGAAGGAGGAGTTTGTAATTATTGGT
GAAAATGAAGCTGATGATAGCTTGGTCTTGAGCCTACGGATGATCCAGTA
CGAGCTTGCCTGGGAAAGATGTAGGCAGCTGCAATCTGAGGACGTTGTTG
TAAAGGGTAAGGTTGTTGGTGCAAACAAAGGTGGAGTGGTTGCTGAGGTG
GAGGGCCTTCGTGGATTTGTCCCTTTCTCCCAGATATCATCGAAATCAAC
TGCAGAAGAGCTTCTCGGTAAAGATCTTCCTCTAAAGTTTGTGGAGGTTG
ATGAGGAACAGTCTAGGCTTTGTCTAAGTAACCGGCAGGCCATGGCTGAC
AGCCAGG
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