CX077777

Overview
NameCX077777
Unique NameCX077777
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length698
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 427.172 bits (1097), Expect = 4.164e-119
Identity = 214/230 (93.04%), Postives = 223/230 (96.96%), Query Frame = 1
Query:    1 DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEK 690
            DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQF+INPATSQPNVSGLILAGSADFKTELSQS++FDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEK+LIGKYFEEISQDTGKYVFGV+DTLKALE+GAVE LIVWENLDINRY LKN+ TGEIVIKHL +DQE NQSNF DA T+AELEVQEK
Sbjct:  142 DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTGKYVFGVEDTLKALEMGAVETLIVWENLDINRYELKNNTTGEIVIKHLGKDQENNQSNFHDAETNAELEVQEK 371          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 420.624 bits (1080), Expect = 3.898e-117
Identity = 208/230 (90.43%), Postives = 222/230 (96.52%), Query Frame = 1
Query:    1 DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEK 690
            DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQF+INPATSQPNVSGLILAGSADFKTELSQS++FDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEK+LIGKYFEEISQDTGKYVFGV+DTLKALE+GA+E LIVWENLDINRY LKNS TGE+V+KH  +DQE++ SNF D+ T+AELEVQEK
Sbjct:  141 DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTGKYVFGVEDTLKALEMGAIETLIVWENLDINRYELKNSTTGEMVVKHFGKDQESDTSNFHDSETNAELEVQEK 370          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 412.149 bits (1058), Expect = 1.386e-114
Identity = 206/232 (88.79%), Postives = 219/232 (94.40%), Query Frame = 1
Query:    1 DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTS 696
            DKFGFIVMDGNGTLFGTLSGNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQ++INPATSQPNVSGLILAGSADFKTELSQSDMFDPRL AKILNVVDVSYGGENGFNQAIELSAEIL+NVKFIQEKRLIGKYFEEISQDTGKYVFGV+DTL ALE GA+E LIVWENLDINRYV+KNSATGE VIKHLN++QEAN  NF+ A +   L+V+EK S
Sbjct:  143 DKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQYYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLAAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKRLIGKYFEEISQDTGKYVFGVEDTLNALESGAIETLIVWENLDINRYVMKNSATGETVIKHLNKEQEANTENFKVADSDLALDVEEKLS 374          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 355.14 bits (910), Expect = 2.011e-97
Identity = 181/232 (78.02%), Postives = 197/232 (84.91%), Query Frame = 1
Query:    1 DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTS 696
            +KFGFIVMDGNG LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI     +PNV+GL+LAGSADFKTELSQSDMFD RLQ KIL +VDVSYGGENGFNQAIELSAE+LSNVKFIQEK+LIG+YF+EISQDTGKY FGVDDTLKALE+GAVEILIVWENLD  RYVLKN  T E  I  L  DQE ++++F D  T  E+E+ E  S
Sbjct:  144 NKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFIT--NDRPNVTGLVLAGSADFKTELSQSDMFDQRLQVKILKLVDVSYGGENGFNQAIELSAEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVDDTLKALEMGAVEILIVWENLDTMRYVLKNHTTDEEKILFLKPDQEKDKTHFTDKDTGVEMEMVESCS 373          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 346.28 bits (887), Expect = 9.342e-95
Identity = 173/230 (75.22%), Postives = 197/230 (85.65%), Query Frame = 1
Query:    1 DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATG-EIVIKHLNRDQEANQSNFRDAATSAELEVQE 687
            +KFGFIVMDGNG LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE+ATQ FI     +PN++GLILAGSADFKTELSQSDMFDPRLQ+K++ +VDVSYGGENGFNQAIEL+AE L NVKFIQEK+LIG+YF+EISQDTGKY FGV+DTL+ALELG+VE LI WENLDI RYVLKN A      + HL  +QE ++S+F D  +  E+E+ E
Sbjct:  144 NKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATQLFIT--NDKPNIAGLILAGSADFKTELSQSDMFDPRLQSKVIKLVDVSYGGENGFNQAIELAAESLQNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHANSTSTTVLHLTPEQEKDKSHFTDKESGVEMELIE 371          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 333.954 bits (855), Expect = 4.798e-91
Identity = 171/228 (75.00%), Postives = 194/228 (85.09%), Query Frame = 1
Query:    4 KFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQE 687
            KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI+    + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L +VD+SYGGENGFNQAIELS E+LSNVKFIQEK+LIG+YF+EISQDTGKY FGV+DTLKALE+GAVEILIV+ENLDI RYVL    T E  I +L  +QE ++S+F D  T  E E+ E
Sbjct:  145 KFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIE 370          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 333.954 bits (855), Expect = 4.798e-91
Identity = 171/228 (75.00%), Postives = 194/228 (85.09%), Query Frame = 1
Query:    4 KFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQE 687
            KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI+    + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L +VD+SYGGENGFNQAIELS E+LSNVKFIQEK+LIG+YF+EISQDTGKY FGV+DTLKALE+GAVEILIV+ENLDI RYVL    T E  I +L  +QE ++S+F D  T  E E+ E
Sbjct:  145 KFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIE 370          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: ERF1_MOUSE (Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4)

HSP 1 Score: 333.954 bits (855), Expect = 4.798e-91
Identity = 171/228 (75.00%), Postives = 194/228 (85.09%), Query Frame = 1
Query:    4 KFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQE 687
            KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI+    + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L +VD+SYGGENGFNQAIELS E+LSNVKFIQEK+LIG+YF+EISQDTGKY FGV+DTLKALE+GAVEILIV+ENLDI RYVL    T E  I +L  +QE ++S+F D  T  E E+ E
Sbjct:  145 KFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIE 370          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: ERF1_MESAU (Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3)

HSP 1 Score: 333.954 bits (855), Expect = 4.798e-91
Identity = 171/228 (75.00%), Postives = 194/228 (85.09%), Query Frame = 1
Query:    4 KFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQE 687
            KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI+    + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L +VD+SYGGENGFNQAIELS E+LSNVKFIQEK+LIG+YF+EISQDTGKY FGV+DTLKALE+GAVEILIV+ENLDI RYVL    T E  I +L  +QE ++S+F D  T  E E+ E
Sbjct:  145 KFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIE 370          
BLAST of CX077777 vs. ExPASy Swiss-Prot
Match: ERF1_HUMAN (Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3)

HSP 1 Score: 333.954 bits (855), Expect = 4.798e-91
Identity = 171/228 (75.00%), Postives = 194/228 (85.09%), Query Frame = 1
Query:    4 KFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQE 687
            KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI+    + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L +VD+SYGGENGFNQAIELS E+LSNVKFIQEK+LIG+YF+EISQDTGKY FGV+DTLKALE+GAVEILIV+ENLDI RYVL    T E  I +L  +QE ++S+F D  T  E E+ E
Sbjct:  145 KFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIE 370          
The following BLAST results are available for this feature:
BLAST of CX077777 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1Z_ARATH4.164e-11993.04Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH3.898e-11790.43Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH1.386e-11488.79Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_POLMI2.011e-9778.02Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DROME9.342e-9575.22Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT4.798e-9175.00Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT4.798e-9175.00Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MOUSE4.798e-9175.00Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MESAU4.798e-9175.00Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_HUMAN4.798e-9175.00Eukaryotic peptide chain release factor subunit 1 ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_5A02_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5A02-A3-1-6.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077777 ID=CX077777; Name=CX077777; organism=Citrus sinensis; type=EST; length=698bp
GATAAATTTGGGTTTATTGTCATGGATGGAAATGGCACCCTATTTGGCAC
ATTAAGTGGAAACACAAGAGAGGTGCTTCATAAGTTTACTGTTGATCTGC
CGAAGAAGCATGGAAGAGGAGGGCAGTCAGCTCTTCGTTTTGCTCGTCTT
CGGATGGAGAAACGGCACAACTATGTGAGGAAGACAGCAGAGCTTGCTAC
ACAGTTCTTTATCAATCCTGCTACCAGTCAGCCCAATGTGTCTGGATTAA
TTCTTGCTGGTTCTGCTGATTTCAAAACTGAGCTGAGCCAGTCTGATATG
TTTGATCCTCGTTTACAAGCCAAGATATTGAATGTTGTTGATGTTTCTTA
TGGTGGGGAAAATGGTTTTAACCAAGCAATTGAGTTGTCTGCAGAAATCT
TATCAAATGTGAAGTTCATACAAGAAAAACGTTTGATTGGAAAATACTTT
GAGGAGATTAGTCAGGACACTGGAAAATATGTGTTTGGTGTTGATGACAC
TTTGAAGGCTCTGGAATTGGGTGCTGTAGAAATCCTTATTGTGTGGGAAA
ATCTGGATATCAATAGATATGTACTGAAAAACAGTGCTACTGGTGAAATT
GTTATAAAGCACTTAAACAGAGACCAAGAGGCCAATCAGAGCAACTTCCG
CGATGCAGCCACATCTGCTGAGTTGGAGGTTCAGGAAAAGACATCTTT
back to top