CX077776

Overview
NameCX077776
Unique NameCX077776
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length702
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX077776 vs. ExPASy Swiss-Prot
Match: ERF1Z_ARATH (Eukaryotic peptide chain release factor subunit 1-3 OS=Arabidopsis thaliana GN=ERF1-3 PE=2 SV=1)

HSP 1 Score: 427.943 bits (1099), Expect = 2.482e-119
Identity = 215/233 (92.27%), Postives = 224/233 (96.14%), Query Frame = -1
Query:    1 DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSL 699
            DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQF+INPATSQPNVSGLILAGSADFKTELSQS++FDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEK+LIGKYFEEISQDTGKYVFGV+DTLKALE+GAVE LIVWENLDINRY LKN+ TGEIVIKHL +DQE NQSNF DA T+AELEVQEK  L
Sbjct:  142 DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTGKYVFGVEDTLKALEMGAVETLIVWENLDINRYELKNNTTGEIVIKHLGKDQENNQSNFHDAETNAELEVQEKMPL 374          
BLAST of CX077776 vs. ExPASy Swiss-Prot
Match: ERF1Y_ARATH (Eukaryotic peptide chain release factor subunit 1-2 OS=Arabidopsis thaliana GN=ERF1-2 PE=2 SV=1)

HSP 1 Score: 421.394 bits (1082), Expect = 2.323e-117
Identity = 209/233 (89.70%), Postives = 223/233 (95.71%), Query Frame = -1
Query:    1 DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSL 699
            DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQF+INPATSQPNVSGLILAGSADFKTELSQS++FDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEK+LIGKYFEEISQDTGKYVFGV+DTLKALE+GA+E LIVWENLDINRY LKNS TGE+V+KH  +DQE++ SNF D+ T+AELEVQEK  L
Sbjct:  141 DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFYINPATSQPNVSGLILAGSADFKTELSQSELFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKKLIGKYFEEISQDTGKYVFGVEDTLKALEMGAIETLIVWENLDINRYELKNSTTGEMVVKHFGKDQESDTSNFHDSETNAELEVQEKMPL 373          
BLAST of CX077776 vs. ExPASy Swiss-Prot
Match: ERF1X_ARATH (Eukaryotic peptide chain release factor subunit 1-1 OS=Arabidopsis thaliana GN=ERF1-1 PE=2 SV=2)

HSP 1 Score: 413.69 bits (1062), Expect = 4.845e-115
Identity = 207/233 (88.84%), Postives = 220/233 (94.42%), Query Frame = -1
Query:    1 DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSL 699
            DKFGFIVMDGNGTLFGTLSGNTREVLHKF+VDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQ++INPATSQPNVSGLILAGSADFKTELSQSDMFDPRL AKILNVVDVSYGGENGFNQAIELSAEIL+NVKFIQEKRLIGKYFEEISQDTGKYVFGV+DTL ALE GA+E LIVWENLDINRYV+KNSATGE VIKHLN++QEAN  NF+ A +   L+V+EK SL
Sbjct:  143 DKFGFIVMDGNGTLFGTLSGNTREVLHKFSVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQYYINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLAAKILNVVDVSYGGENGFNQAIELSAEILANVKFIQEKRLIGKYFEEISQDTGKYVFGVEDTLNALESGAIETLIVWENLDINRYVMKNSATGETVIKHLNKEQEANTENFKVADSDLALDVEEKLSL 375          
BLAST of CX077776 vs. ExPASy Swiss-Prot
Match: ERF1_POLMI (Eukaryotic peptide chain release factor subunit 1 OS=Polyandrocarpa misakiensis GN=ERF1 PE=2 SV=1)

HSP 1 Score: 356.681 bits (914), Expect = 7.028e-98
Identity = 182/233 (78.11%), Postives = 198/233 (84.98%), Query Frame = -1
Query:    1 DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSL 699
            +KFGFIVMDGNG LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI     +PNV+GL+LAGSADFKTELSQSDMFD RLQ KIL +VDVSYGGENGFNQAIELSAE+LSNVKFIQEK+LIG+YF+EISQDTGKY FGVDDTLKALE+GAVEILIVWENLD  RYVLKN  T E  I  L  DQE ++++F D  T  E+E+ E  SL
Sbjct:  144 NKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFIT--NDRPNVTGLVLAGSADFKTELSQSDMFDQRLQVKILKLVDVSYGGENGFNQAIELSAEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVDDTLKALEMGAVEILIVWENLDTMRYVLKNHTTDEEKILFLKPDQEKDKTHFTDKDTGVEMEMVESCSL 374          
BLAST of CX077776 vs. ExPASy Swiss-Prot
Match: ERF1_DROME (Eukaryotic peptide chain release factor subunit 1 OS=Drosophila melanogaster GN=eRF1 PE=1 SV=2)

HSP 1 Score: 347.051 bits (889), Expect = 5.569e-95
Identity = 174/234 (74.36%), Postives = 198/234 (84.62%), Query Frame = -1
Query:    1 DKFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATG-EIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSL 699
            +KFGFIVMDGNG LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE+ATQ FI     +PN++GLILAGSADFKTELSQSDMFDPRLQ+K++ +VDVSYGGENGFNQAIEL+AE L NVKFIQEK+LIG+YF+EISQDTGKY FGV+DTL+ALELG+VE LI WENLDI RYVLKN A      + HL  +QE ++S+F D  +  E+E+ E   L
Sbjct:  144 NKFGFIVMDGNGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAEVATQLFIT--NDKPNIAGLILAGSADFKTELSQSDMFDPRLQSKVIKLVDVSYGGENGFNQAIELAAESLQNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLRALELGSVETLICWENLDIQRYVLKNHANSTSTTVLHLTPEQEKDKSHFTDKESGVEMELIESQPL 375          
BLAST of CX077776 vs. ExPASy Swiss-Prot
Match: ERF1_RAT (Eukaryotic peptide chain release factor subunit 1 OS=Rattus norvegicus GN=Etf1 PE=2 SV=3)

HSP 1 Score: 334.724 bits (857), Expect = 2.860e-91
Identity = 172/232 (74.14%), Postives = 195/232 (84.05%), Query Frame = -1
Query:    1 KFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSL 696
            KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI+    + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L +VD+SYGGENGFNQAIELS E+LSNVKFIQEK+LIG+YF+EISQDTGKY FGV+DTLKALE+GAVEILIV+ENLDI RYVL    T E  I +L  +QE ++S+F D  T  E E+ E   L
Sbjct:  145 KFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPL 374          
BLAST of CX077776 vs. ExPASy Swiss-Prot
Match: ERF1_RABIT (Eukaryotic peptide chain release factor subunit 1 OS=Oryctolagus cuniculus GN=ETF1 PE=2 SV=3)

HSP 1 Score: 334.724 bits (857), Expect = 2.860e-91
Identity = 172/232 (74.14%), Postives = 195/232 (84.05%), Query Frame = -1
Query:    1 KFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSL 696
            KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI+    + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L +VD+SYGGENGFNQAIELS E+LSNVKFIQEK+LIG+YF+EISQDTGKY FGV+DTLKALE+GAVEILIV+ENLDI RYVL    T E  I +L  +QE ++S+F D  T  E E+ E   L
Sbjct:  145 KFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPL 374          
BLAST of CX077776 vs. ExPASy Swiss-Prot
Match: ERF1_MOUSE (Eukaryotic peptide chain release factor subunit 1 OS=Mus musculus GN=Etf1 PE=1 SV=4)

HSP 1 Score: 334.724 bits (857), Expect = 2.860e-91
Identity = 172/232 (74.14%), Postives = 195/232 (84.05%), Query Frame = -1
Query:    1 KFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSL 696
            KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI+    + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L +VD+SYGGENGFNQAIELS E+LSNVKFIQEK+LIG+YF+EISQDTGKY FGV+DTLKALE+GAVEILIV+ENLDI RYVL    T E  I +L  +QE ++S+F D  T  E E+ E   L
Sbjct:  145 KFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPL 374          
BLAST of CX077776 vs. ExPASy Swiss-Prot
Match: ERF1_MESAU (Eukaryotic peptide chain release factor subunit 1 OS=Mesocricetus auratus GN=ETF1 PE=1 SV=3)

HSP 1 Score: 334.724 bits (857), Expect = 2.860e-91
Identity = 172/232 (74.14%), Postives = 195/232 (84.05%), Query Frame = -1
Query:    1 KFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSL 696
            KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI+    + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L +VD+SYGGENGFNQAIELS E+LSNVKFIQEK+LIG+YF+EISQDTGKY FGV+DTLKALE+GAVEILIV+ENLDI RYVL    T E  I +L  +QE ++S+F D  T  E E+ E   L
Sbjct:  145 KFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPL 374          
BLAST of CX077776 vs. ExPASy Swiss-Prot
Match: ERF1_HUMAN (Eukaryotic peptide chain release factor subunit 1 OS=Homo sapiens GN=ETF1 PE=1 SV=3)

HSP 1 Score: 334.724 bits (857), Expect = 2.860e-91
Identity = 172/232 (74.14%), Postives = 195/232 (84.05%), Query Frame = -1
Query:    1 KFGFIVMDGNGTLFGTLSGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKTAELATQFFINPATSQPNVSGLILAGSADFKTELSQSDMFDPRLQAKILNVVDVSYGGENGFNQAIELSAEILSNVKFIQEKRLIGKYFEEISQDTGKYVFGVDDTLKALELGAVEILIVWENLDINRYVLKNSATGEIVIKHLNRDQEANQSNFRDAATSAELEVQEKTSL 696
            KFGFIV+DG+G LFGTL GNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRK AE A Q FI+    + NV+GL+LAGSADFKTELSQSDMFD RLQ+K+L +VD+SYGGENGFNQAIELS E+LSNVKFIQEK+LIG+YF+EISQDTGKY FGV+DTLKALE+GAVEILIV+ENLDI RYVL    T E  I +L  +QE ++S+F D  T  E E+ E   L
Sbjct:  145 KFGFIVIDGSGALFGTLQGNTREVLHKFTVDLPKKHGRGGQSALRFARLRMEKRHNYVRKVAETAVQLFISG--DKVNVAGLVLAGSADFKTELSQSDMFDQRLQSKVLKLVDISYGGENGFNQAIELSTEVLSNVKFIQEKKLIGRYFDEISQDTGKYCFGVEDTLKALEMGAVEILIVYENLDIMRYVLHCQGTEEEKILYLTPEQEKDKSHFTDKETGQEHELIESMPL 374          
The following BLAST results are available for this feature:
BLAST of CX077776 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
ERF1Z_ARATH2.482e-11992.27Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1Y_ARATH2.323e-11789.70Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1X_ARATH4.845e-11588.84Eukaryotic peptide chain release factor subunit 1-... [more]
ERF1_POLMI7.028e-9878.11Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_DROME5.569e-9574.36Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RAT2.860e-9174.14Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_RABIT2.860e-9174.14Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MOUSE2.860e-9174.14Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_MESAU2.860e-9174.14Eukaryotic peptide chain release factor subunit 1 ... [more]
ERF1_HUMAN2.860e-9174.14Eukaryotic peptide chain release factor subunit 1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_5A02_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-5A02-A3-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077776 ID=CX077776; Name=CX077776; organism=Citrus sinensis; type=EST; length=702bp
TAAAGATGTCTTTTCCTGAACCTCCAACTCAGCAGATGTGGCTGCATCGC
GGAAGTTGCTCTGATTGGCCTCTTGGTCTCTGTTTAAGTGCTTTATAACA
ATTTCACCAGTAGCACTGTTTTTCAGTACATATCTATTGATATCCAGATT
TTCCCACACAATAAGGATTTCTACAGCACCCAATTCCAGAGCCTTCAAAG
TGTCATCAACACCAAACACATATTTTCCAGTGTCCTGACTAATCTCCTCA
AAGTATTTTCCAATCAAACGTTTTTCTTGTATGAACTTCACATTTGATAA
GATTTCTGCAGACAACTCAATTGCTTGGTTAAAACCATTTTCCCCACCAT
AAGAAACATCAACAACATTCAATATCTTGGCTTGTAAACGAGGATCAAAC
ATATCAGACTGGCTCAGCTCAGTTTTGAAATCAGCAGAACCAGCAAGAAT
TAATCCAGACACATTGGGCTGACTGGTAGCAGGATTGATAAAGAACTGTG
TAGCAAGCTCTGCTGTCTTCCTCACATAGTTGTGCCGTTTCTCCATCCGA
AGACGAGCAAAACGAAGAGCTGACTGCCCTCCTCTTCCATGCTTCTTCGG
CAGATCAACAGTAAACTTATGAAGCACCTCTCTTGTGTTTCCACTTAATG
TGCCAAATAGGGTGCCATTTCCATCCATGACAATAAACCCAAATTTATCC
CT
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