CX077759

Overview
NameCX077759
Unique NameCX077759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length689
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX077759 vs. ExPASy Swiss-Prot
Match: MA1C1_HUMAN (Mannosyl-oligosaccharide 1,2-alpha-mannosidase IC OS=Homo sapiens GN=MAN1C1 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 4.312e-13
Identity = 34/68 (50.00%), Postives = 42/68 (61.76%), Query Frame = 1 
Query:  382 SWNILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDV--RTPQTSNIK*DLFL 579
            S+ ILRPE VES  YLWR T N  Y+EWGW +  A EK  R E+G+ G++DV   TP   N +   FL
Sbjct:  517 SYYILRPEVVESYMYLWRQTHNPIYREWGWEVVLALEKYCRTEAGFSGIQDVYSSTPNHDNKQQSFFL 584

HSP 2 Score: 25.7942 bits (55), Expect = 4.312e-13
Identity = 11/30 (36.67%), Postives = 16/30 (53.33%), Query Frame = 3 
Query:  189 LFLQLAWTCYNFYQSTPTKLAGENYFFRDG 278
            L  Q+  TC+  Y  + TKL  E ++F  G
Sbjct:  477 LAAQITKTCHESYARSDTKLGPEAFWFNSG 506
[Close]
BLAST of CX077759 vs. ExPASy Swiss-Prot
Match: MA1B1_HUMAN (Endoplasmic reticulum mannosyl-oligosaccharide 1,2-alpha-mannosidase OS=Homo sapiens GN=MAN1B1 PE=1 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.385e-12
Identity = 30/55 (54.55%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:  388 NILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIES-GYVGLKDVRTPQ 549
            N+LRPETVESLFYL+R+TG++ Y++WGW I Q+F + +R+ S GY  + +V+ PQ
Sbjct:  594 NLLRPETVESLFYLYRVTGDRKYQDWGWEILQSFSRFTRVPSGGYSSINNVQDPQ 648
[Close]
BLAST of CX077759 vs. ExPASy Swiss-Prot
Match: MAN12_CAEEL (Mannosyl-oligosaccharide 1,2-alpha-mannosidase C52E4.5 OS=Caenorhabditis elegans GN=C52E4.5 PE=1 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.260e-11
Identity = 41/142 (28.87%), Postives = 67/142 (47.18%), Query Frame = 1 
Query:  199 SLLGHVITSTSQHRQNWLERITSFVMGMFAVFVLSNEFSIFKVLLFTSVH--------------------LLHFQDMSVGTSWN-----ILRPETVESLFYLWRLTGNKTYKEWGWNIFQAFEKNSRIESGYVGLKDVRTPQ 549
            S L + +   +   Q+ +  +  FV GMFA+  ++ +    K+ + T                       + +F +    TS +     I RPE +E  FYLWRLTG   Y++W W+  QA EK  R++SG+ GL++V  P+
Sbjct:  401 SNLTYTVELNNGQAQHKMGHLACFVPGMFALQAINEDTEEEKLRIMTLAEELAKTCHESYIRSETHIGPEMFYFNERDEATSKHSENGYIQRPEVIEGWFYLWRLTGKTMYRDWVWDAVQAIEKYCRVDSGFTGLQNVYNPK 542
The following BLAST results are available for this feature:
BLAST of CX077759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
MA1C1_HUMAN4.312e-1350.00Mannosyl-oligosaccharide 1,2-alpha-mannosidase IC ... [more]
MA1B1_HUMAN7.385e-1254.55Endoplasmic reticulum mannosyl-oligosaccharide 1,2... [more]
MAN12_CAEEL1.260e-1128.87Mannosyl-oligosaccharide 1,2-alpha-mannosidase C52... [more]
back to top
Properties
Property NameValue
Genbank descriptionUCRCS08_58H01_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-58H01-P1-1-4.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077759 ID=CX077759; Name=CX077759; organism=Citrus sinensis; type=EST; length=689bp
GGTTAATCTTTTCTTTTCCTAGTAGGCCAGTACTTAAAGGAATAAACCAG
AACCAAAATTTTTAATTTGAAATATAATTTAATTTGGATTGCTGACCTAA
CCATTCATTAGCTTCTAGTGTATGGTCCTTCTTTCCCATATCAAAACCAA
GGATGATGTGAGATGGGTTTTTCACTGGATGTTTCTGTCTTTTTTTGCAG
CTTGCTTGGACATGTTATAACTTCTACCAGTCAACACCGACAAAATTGGC
TGGAGAGAATTACTTCTTTCGTGATGGGCATGTTTGCAGTTTTTGTATTA
TCAAATGAATTTTCAATTTTTAAGGTACTGCTGTTTACCAGTGTTCATTT
GTTACATTTTCAGGACATGTCTGTGGGCACATCATGGAACATACTGAGAC
CTGAGACTGTTGAATCACTTTTTTACTTGTGGCGTCTAACTGGCAACAAG
ACATACAAAGAGTGGGGTTGGAACATATTTCAGGCATTCGAAAAGAACTC
CCGAATAGAATCAGGATATGTTGGACTGAAAGATGTAAGGACACCTCAAA
CCTCCAACATTAAATAAGATCTTTTTCTATAAATATTCTGTATGCTTCAG
TATGTTTTCATCAAAAAGCTGACGTGATACGAAACTTGGGGATGCTTTTT
TAGAAAATGCGCTTCTTAGTATCTTTGACTGTTAAACCT
back to top