CX077756

Overview
NameCX077756
Unique NameCX077756
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX077756 vs. ExPASy Swiss-Prot
Match: EXT1A_DANRE (Exostosin-1a OS=Danio rerio GN=ext1a PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.747e-11
Identity = 33/96 (34.38%), Postives = 57/96 (59.38%), Query Frame = -3 
Query:  273 YQRRFYKTKFCICPGGSQVNSARIADSIHYGCVPVILSNYYDLPFNDILDWRKFAVILNERDVYQLKQILKNISDAEFVSLHNNLVKVQKHFQWNS 560
            Y+   + + FC+ P G ++ S R  +++   CVPV+LSN ++LPF++I+DWR  AVI +ER + Q+   +++I     +SL     + Q  F W +
Sbjct:  308 YKEMLHNSTFCLVPRGRRLGSFRFLEALQAACVPVMLSNGWELPFSEIIDWRTAAVIGDERLLLQIPSTVRSIHQDRILSL-----RQQTQFLWEA 398
The following BLAST results are available for this feature:
BLAST of CX077756 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
EXT1A_DANRE2.747e-1134.38Exostosin-1a OS=Danio rerio GN=ext1a PE=2 SV=1[more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_58G11_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-58G11-N21-1-5.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077756 ID=CX077756; Name=CX077756; organism=Citrus sinensis; type=EST; length=946bp
TTTTTTTTTGAACCGATAAAGAACAAATCAATTGCAACCTTCAGGTGCAT
ACGCATCAATTCCATTAAAGGATCACGGTTAAAGATTCGTGTGTTATATG
TGAGATACTCTACAAACTTTTCGGGAATCGGGATGTTAGGAAGCAGCCAT
TTAAAGGTGTACAAAACTGGAAAAGAATTATATCATTCAGCAAACTAGAA
GTACTTAATCACATGGCGGCGTAACCATAGCTCGTACATGACCATGTGGA
ATGCATCAAATCTGACAGGAGGTGAATTCCATTGAAAGTGCTTCTGGACC
TTCACTAGGTTATTATGAAGTGAAACAAACTCTGCATCAGAGATGTTCTT
GAGAATTTGCTTGAGCTGATAAACATCCCTTTCGTTAAGTATGACAGCAA
ACTTTCGCCAATCAAGAATGTCATTGAATGGCAGGTCATAGTAATTGGAT
AATATTACAGGAACACATCCATAATGGATTGAGTCAGCTATACGAGCACT
ATTGACCTGTGAGCCACCAGGACATATACAAAATTTAGTCTTATAAAATC
TCCTCTGATATACAAGAGGTCCAATAGCCCTATTAATTCTATTGTTTGAA
ATGTCAAGTTCTGTGTCATTCTCCCATACACGAGCCAAGATAACTCTAAT
TTTAGAGTTACGGTGACCAGCCCAAAAACCAAGAATGGTCCTGTTTTCAA
CGTCACGTCCTCCACGGGGAAGAGCAAATGGCTGCAGCACTTGAGGCAGA
GCAACGTCTTTATGTGGAATGAAAGCAACGTCATAGCTAGGAGAGCATAC
AACTCGAATTGCATTCTTAATGAGAAACGGAACTCCTTCCGTTGCCCTCA
CACCTACATCATGACAAGTTACAAAGAAGTGATCCGCACCCAAAGTTCTG
TTCCCATAAGGATACTTGTTGATCAAGCTGTCCACGTAATCCTTAA
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