EY702273

Overview
NameEY702273
Unique NameEY702273
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702273_ssr18 microsatellite EY702273_ssr18:18..29. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig9973 contig Csv1_Contig9973:1..895. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY702273 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 297.36 bits (760), Expect = 3.684e-88
Identity = 145/200 (72.50%), Postives = 163/200 (81.50%), Query Frame = 3 
Query:   81 IGAKEMLGNPLNVSSAVRTSAPGASNPSTFKPVALFXXXXXXXXXXXXXXXXXXXNEELAKWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVFAVIAEIVLVGGAEYYTNHHGLDLEEQL 680
            +G  EMLG PLN  +  R+SAP AS+PSTFK VALF                   ++ELAKWYGPDRRIFLP+GLLDRSEIPEYL GEV GDYGYDPFGL KKP++F+KYQA+ELIHARWAMLGAAGFIIPEA NK+GANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLV AV+AE+VL+GGAEYY   +GLD E++L
Sbjct:    4 LGVSEMLGTPLNFRAVSRSSAPLASSPSTFKTVALFSKKKPAPAKSKAVSET---SDELAKWYGPDRRIFLPDGLLDRSEIPEYLNGEVAGDYGYDPFGLGKKPENFAKYQAFELIHARWAMLGAAGFIIPEALNKYGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVVLLGGAEYYRITNGLDFEDKL 200

HSP 2 Score: 50.0618 bits (118), Expect = 3.684e-88
Identity = 24/49 (48.98%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:  700 DPLGISEGS*PICIVXVEGNHEGKLGRFAMLGSFLRAYVTGEGPCENFA 846
            DPLG+++      ++ V+    G+L  FAMLG F++AYVTGEGP EN A
Sbjct:  207 DPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLA 255
[Close]
BLAST of EY702273 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 8.316e-31
Identity = 60/136 (44.12%), Postives = 82/136 (60.29%), Query Frame = 3 
Query:  261 KWYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPI---NLVFAVIAEIVLVGGAEYYTNHHG 659
            ++YGPDR  FL  G    ++ PEYLTGE PGDYG+D  GLS  P  F++Y+  ELIHARWA+LGA G + PE  +++      E VWFK GA +     LNY G    I   +++  +  ++VL+G AE Y  + G
Sbjct:   32 EFYGPDRAKFL--GPFSENDTPEYLTGEFPGDYGWDTAGLSADPQTFARYREIELIHARWALLGALGILTPELLSQYAGVQFGEPVWFKAGAQIFADGGLNYLGNESLIHAQSIIATLAVQVVLMGLAEAYRANGG 165

HSP 2 Score: 39.2762 bits (90), Expect = 8.316e-31
Identity = 18/50 (36.00%), Postives = 30/50 (60.00%), Query Frame = 1 
Query:  700 DPLGISEGS*PICIVXVEGNHEGKLGRFAMLGSFLRAYVTGEGPCENFAN 849
            DPLG+++       + V+    G+L  F+ LG F++A VTG+GP +N  +
Sbjct:  183 DPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTD 232
[Close]
BLAST of EY702273 vs. ExPASy Swiss-Prot
Match: CB2B_PINSY (Chlorophyll a-b binding protein type 2 member 1B, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.163e-29
Identity = 58/130 (44.62%), Postives = 77/130 (59.23%), Query Frame = 3 
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 644
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P++F+K +  E+IH RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G    +    + A+ A +++L+G  E Y
Sbjct:   58 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPENFAKNRELEVIHCRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVILMGAVEGY 183

HSP 2 Score: 43.8986 bits (102), Expect = 1.163e-29
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:  700 DPLGISEGS*PICIVXVEGNHEGKLGRFAMLGSFLRAYVTGEGPCENFAN 849
            DPLG++E       + V+    G+L  F+M G F++A VTG+GP EN A+
Sbjct:  204 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 253
[Close]
BLAST of EY702273 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.164e-29
Identity = 61/130 (46.92%), Postives = 79/130 (60.77%), Query Frame = 3 
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 644
            WYGPDR ++L  G L   E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK G+ +     L+Y G    I    + A+ A ++VL+G  E Y
Sbjct:   49 WYGPDRVLYL--GPLS-GEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLIHAQSILAIWACQVVLMGAIEGY 174

HSP 2 Score: 43.8986 bits (102), Expect = 1.164e-29
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:  700 DPLGISEGS*PICIVXVEGNHEGKLGRFAMLGSFLRAYVTGEGPCENFAN 849
            DPLG+++       V V+    G+L  F+M G F++A VTG+GP EN A+
Sbjct:  195 DPLGLADDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 244
[Close]
BLAST of EY702273 vs. ExPASy Swiss-Prot
Match: CB2A_PYRPY (Chlorophyll a-b binding protein 1A, chloroplastic OS=Pyrus pyrifolia PE=2 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.514e-29
Identity = 59/130 (45.38%), Postives = 78/130 (60.00%), Query Frame = 3 
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYY 644
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G  + I    + A+ A +++L+G  E Y
Sbjct:   62 WYGPDRVMYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGY 187

HSP 2 Score: 44.2838 bits (103), Expect = 1.514e-29
Identity = 21/52 (40.38%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:  694 HLDPLGISEGS*PICIVXVEGNHEGKLGRFAMLGSFLRAYVTGEGPCENFAN 849
            + DPLG+++       V V+    G+L  F+M G F++A VTG+GP EN A+
Sbjct:  206 NFDPLGLADDPDAFADVKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 257
[Close]
BLAST of EY702273 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.567e-29
Identity = 59/130 (45.38%), Postives = 78/130 (60.00%), Query Frame = 3 
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFG--KNIPINLVFAVIA-EIVLVGGAEYY 644
            WYGPDR ++L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH+RWAMLGA G + PE   + G   G EAVWFK GA +     L+Y G  + I    + A+ A +++L+G  E Y
Sbjct:   62 WYGPDRVLYLGPF---SGEPPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRWAMLGALGCVFPELLARNGVKFG-EAVWFKAGAQIFSEGGLDYLGSPQLIHAQSILAIWACQVILMGAIEGY 187

HSP 2 Score: 43.1282 bits (100), Expect = 2.567e-29
Identity = 20/52 (38.46%), Postives = 32/52 (61.54%), Query Frame = 1 
Query:  694 HLDPLGISEGS*PICIVXVEGNHEGKLGRFAMLGSFLRAYVTGEGPCENFAN 849
            + DPLG+++       + V+    G+L  F+M G F++A VTG+GP EN A+
Sbjct:  206 NFDPLGLADDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLAD 257
[Close]
BLAST of EY702273 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 3.345e-29
Identity = 59/130 (45.38%), Postives = 76/130 (58.46%), Query Frame = 3 
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 644
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK G+ +     L+Y G    +    + A+ A ++VL+G  E Y
Sbjct:   50 WYGPDRVKYLGPF---SGEAPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 175

HSP 2 Score: 42.743 bits (99), Expect = 3.345e-29
Identity = 20/50 (40.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:  700 DPLGISEGS*PICIVXVEGNHEGKLGRFAMLGSFLRAYVTGEGPCENFAN 849
            DPLG+++       + V+    G+L  F+M G F++A VTG+GP EN A+
Sbjct:  196 DPLGLADDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 245
[Close]
BLAST of EY702273 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.355e-29
Identity = 58/130 (44.62%), Postives = 77/130 (59.23%), Query Frame = 3 
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 644
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E Y
Sbjct:   53 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGY 178

HSP 2 Score: 42.743 bits (99), Expect = 4.355e-29
Identity = 20/50 (40.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:  700 DPLGISEGS*PICIVXVEGNHEGKLGRFAMLGSFLRAYVTGEGPCENFAN 849
            DPLG+++       + V+    G+L  F+M G F++A VTG+GP EN A+
Sbjct:  199 DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 248
[Close]
BLAST of EY702273 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 4.356e-29
Identity = 58/130 (44.62%), Postives = 77/130 (59.23%), Query Frame = 3 
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 644
            WYGPDR  +L        E P YLTGE PGDYG+D  GLS  P+ FSK +  E+IH+RWAMLGA G + PE  ++ G   G EAVWFK G+ +     L+Y G    +    + A+ A +++L+G  E Y
Sbjct:   52 WYGPDRVKYLGPF---SGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLSRNGVKFG-EAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGY 177

HSP 2 Score: 42.743 bits (99), Expect = 4.356e-29
Identity = 20/50 (40.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:  700 DPLGISEGS*PICIVXVEGNHEGKLGRFAMLGSFLRAYVTGEGPCENFAN 849
            DPLG+++       + V+    G+L  F+M G F++A VTG+GP EN A+
Sbjct:  198 DPLGLADDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 247
[Close]
BLAST of EY702273 vs. ExPASy Swiss-Prot
Match: CB23_PETSP (Chlorophyll a-b binding protein 22R, chloroplastic OS=Petunia sp. GN=CAB22R PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 4.356e-29
Identity = 59/130 (45.38%), Postives = 75/130 (57.69%), Query Frame = 3 
Query:  264 WYGPDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFSKYQAYELIHARWAMLGAAGFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKN--IPINLVFAVIA-EIVLVGGAEYY 644
            WYGPDR  +L        E P YLTGE P DYG+D  GLS  P+ F+K +  E+IH RWAMLGA G + PE F + G   G EAVWFK GA +     L+Y G    +    + A+ A ++VL+G  E Y
Sbjct:   51 WYGPDRVKYLGPF---SGEAPSYLTGEFPSDYGWDTAGLSADPETFAKNRELEVIHCRWAMLGALGCVFPELFARNGIKFG-EAVWFKAGAQIFSEGGLDYLGNPSLVHAQSILAIWACQVVLMGAVEGY 176

HSP 2 Score: 43.8986 bits (102), Expect = 4.356e-29
Identity = 21/50 (42.00%), Postives = 31/50 (62.00%), Query Frame = 1 
Query:  700 DPLGISEGS*PICIVXVEGNHEGKLGRFAMLGSFLRAYVTGEGPCENFAN 849
            DPLG++E       + V+    G+L  F+M G F++A VTG+GP EN A+
Sbjct:  197 DPLGLAEDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLAD 246
The following BLAST results are available for this feature:
BLAST of EY702273 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB26_ARATH3.684e-8872.50Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE8.316e-3144.12Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2B_PINSY1.163e-2944.62Chlorophyll a-b binding protein type 2 member 1B, ... [more]
CB29_MAIZE1.164e-2946.92Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB2A_PYRPY1.514e-2945.38Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB2A_PINSY2.567e-2945.38Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB24_PETSP3.345e-2945.38Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB22_PEA4.355e-2944.62Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB28_PEA4.356e-2944.62Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PETSP4.356e-2945.38Chlorophyll a-b binding protein 22R, chloroplastic... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-005-A09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702273 ID=EY702273; Name=EY702273; organism=Citrus sinensis; type=EST; length=895bp
CCACGCGTCCGCAAAGAAGCAGCAGCAGCAACACTCTGAAGATGGCTTCA
TTGGCAGCATCGTCCACTCCTGCTGCCTCCATTGGAGCTAAGGAGATGCT
TGGCAACCCTCTCAATGTCAGCAGTGCTGTTAGGACTTCAGCTCCAGGTG
CATCAAACCCTTCTACTTTCAAGCCCGTTGCTCTCTTCTCCAAGAAGAAA
GCCGCCCCTCCTGCCAAGTCTAAGCCCGTCGCCGTCTCCCCCGTTAACGA
AGAGCTCGCCAAGTGGTATGGTCCTGACCGAAGAATTTTCTTGCCCGAGG
GTCTCTTGGACAGATCTGAGATCCCTGAGTACTTGACCGGAGAAGTTCCC
GGAGACTATGGTTACGATCCTTTTGGTCTCAGCAAGAAACCAGACGACTT
CAGCAAATATCAGGCATATGAATTGATTCATGCCAGATGGGCCATGCTTG
GTGCTGCTGGTTTCATCATTCCTGAAGCCTTTAACAAGTTTGGTGCTAAC
TGTGGTCCTGAAGCTGTCTGGTTCAAGACTGGAGCTCTACTTCTTGATGG
AAACACATTGAACTACTTCGGAAAGAACATCCCAATCAACCTTGTTTTTG
CTGTCATTGCTGAGATTGTTCTTGTAGGGGGTGCTGAATATTATACAAAT
CACCACGGTTTGGATTTGGAGGAACAGCTTCCCCCAGGTGCGCCATTTGG
ACCCCCTGGGGATTAGCGAAGGATCCTGACCAATTTGCATTGTTANAGTG
GAAGGAAATCACGAAGGAAAACTTGGAAGGTTTGCCATGCTTGGATCCTT
TCTCCGAGCTTATGTCACCGGGGAAGGGCCATGTGAGAACTTTGCTAACA
TCTCAGTGATCGCTTTGCCTCCACTTTTCTTACTCTGCTTCCGGA
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