EY680486

Overview
NameEY680486
Unique NameEY680486
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length831
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 224.172 bits (570), Expect = 7.183e-58
Identity = 120/162 (74.07%), Postives = 129/162 (79.63%), Query Frame = 3
Query:  135 PETIAIFGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEGAPCEGEETQ*TTTPSSWLQHLV----PTQPQSPILN 608
            P   A  GQ+PG NP IPGMFPNMFPL +GQ FGALPVMP+QAMTQQATRHARRVYVGGLP  ANEQSVATFFS VM+AIGGNTAGPGDAVVNVYIN+EKKFAFVEMRSVEE SNAMALDGIIFEGAPC+         PS +   L     P+QP +P LN
Sbjct:  188 PGITAAAGQVPGTNPPIPGMFPNMFPLASGQ-FGALPVMPIQAMTQQATRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMRSVEEASNAMALDGIIFEGAPCK------VRRPSDYNPSLAATLGPSQP-NPNLN 341          
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 219.935 bits (559), Expect = 1.355e-56
Identity = 119/164 (72.56%), Postives = 127/164 (77.44%), Query Frame = 3
Query:  129 LQPETIAIFGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEGAPCEGEETQ*TTTPSSWLQHLV----PTQPQSPILN 608
            L P      GQ+PG NPAIPG+F NMFPL + Q FGALP+MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFS VM AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEE SNAMALDG+IFEG P +         PS +   L     P+QP SP LN
Sbjct:  168 LLPGATDAAGQVPGTNPAIPGLFSNMFPLASSQ-FGALPMMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGGPVK------VRRPSDYNPSLAATLGPSQP-SPNLN 323          
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 5.148e-56
Identity = 117/160 (73.12%), Postives = 127/160 (79.38%), Query Frame = 3
Query:  147 AIFGQIPGANPAIPG--MFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEGAPCEGEETQ*TTTPSSWLQHLV----PTQPQSPILN 608
            A+ GQ+P A P +PG  MFPNMFPL TGQ FG L +MP+QAMTQQATRHARRVYVGGL PTANEQSVATFFSQVMAA+GGNTAGPGDAVVNVYINHEKKFAFVEMRSVEE SNAM+LDGIIFEGAP +         PS +   L     P+QP SP LN
Sbjct:  189 AVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVK------VRRPSDYNPSLAATLGPSQP-SPHLN 341          
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 8.781e-56
Identity = 131/234 (55.98%), Postives = 149/234 (63.68%), Query Frame = 3
Query:  129 LQPETIAIFGQIPGA--NPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEGAPCEGEETQ*TTTPSSWLQHLVPTQPQSPILNWLGGWANTWIPVGGR*RARNAFLSGGPPFILHKSPQIQGNLRQPPLGPREGLSPRLAREKTATSLSG*CIYK 824
            L    +A  GQ+P       IPGMF NMFP+V GQQ GALPV+PVQAMTQQATRHARRVYVGGLPPTANEQSV+TFFSQVM+AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEE SNAMALDGII EG P +      T    S    L P+QP +P LN LG    +    GG       F+ G P +      ++Q        GP  G +    RE   +     C+Y+
Sbjct:  199 LAATAVAAAGQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRP--TDYNPSLAATLGPSQP-NPNLN-LGAVGLSSGSTGGLEGPDRIFVGGLPYYF----TEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQ 424          
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2)

HSP 1 Score: 192.971 bits (489), Expect = 1.773e-48
Identity = 124/222 (55.86%), Postives = 140/222 (63.06%), Query Frame = 3
Query:  159 QIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEGAPCEGEETQ*TTTPSSWLQHLVPTQPQSPILNWLGGWANTWIPVGGR*RARNAFLSGGPPFILHKSPQIQGNLRQPPLGPREGLSPRLAREKTATSLSG*CIYK 824
            Q PG   AIPGMFPNM P+  GQ F  L + P QAMTQQATRHARRVYVGGLPPTANEQSVA +F+QVMAAIGGNTAGPGDAV+NVYINH+KKFAFVEMRSVEE SNAMALDGI+FEGAP +      T    S    L P+QP SP LN L     T    GG       F+ G P +      Q++  L     GP  G      RE   +     C+Y+
Sbjct:  174 QFPGT--AIPGMFPNMLPMGVGQ-FNPLVIQP-QAMTQQATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRP--TDYNPSLAAALGPSQP-SPNLN-LAAVGLTPGSAGGLEGPDRIFVGGLPYYF--TEAQVRELLES--FGPLRGFDLVKDRETGNSKGYAFCVYQ 383          
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 4.368e-47
Identity = 104/152 (68.42%), Postives = 116/152 (76.32%), Query Frame = 3
Query:  141 TIAIFGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEGAPCEGEETQ*TTTPSSWLQHLVPTQPQS 596
            TI    Q+PG++  IPGMFPNM P   GQ    L + P QAMTQQATRHARRVYVGGLPP+ANEQSVA +F+QVMAAIGGNTAGPGDAV+NVYINH+KKFAFVEMRSVEE SNAMALDGI+FEGAP +      T    S    L P+QP S
Sbjct:  161 TIPTPSQLPGSS--IPGMFPNMLPFADGQ-INPLVMQP-QAMTQQATRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRP--TDYNPSLAAALGPSQPSS 306          
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2)

HSP 1 Score: 186.037 bits (471), Expect = 2.168e-46
Identity = 119/223 (53.36%), Postives = 138/223 (61.88%), Query Frame = 3
Query:  156 GQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEGAPCEGEETQ*TTTPSSWLQHLVPTQPQSPILNWLGGWANTWIPVGGR*RARNAFLSGGPPFILHKSPQIQGNLRQPPLGPREGLSPRLAREKTATSLSG*CIYK 824
            GQ+P   PAI GM PNMF L T   F  L + P QAMTQQATRHARRVYVGGLPPTANE +VA +F+QVMAA+GGNTAGPGDAV+NVYINH+KKFAFVEMRSVEE SNAMALDGI+FEGAP +      T    S    L P+QP +P LN L     T    GG       F+ G P +      Q++  L     GP  G      RE   +     C+Y+
Sbjct:  195 GQVPVVAPAISGMLPNMFNL-TQTPFTPLVIQP-QAMTQQATRHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRP--TDYNPSLAAALGPSQP-NPNLN-LAAVGLTPGSAGGLEGPDRIFVGGLPYYF--TEAQVRELLES--FGPLRGFDLVKDRETGNSKGYAFCVYQ 407          
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2A2A_WHEAT (Splicing factor U2af large subunit A OS=Triticum aestivum GN=U2AF65A PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 1.042e-40
Identity = 110/222 (49.55%), Postives = 129/222 (58.11%), Query Frame = 3
Query:  159 QIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEGAPCEGEETQ*TTTPSSWLQHLVPTQPQSPILNWLGGWANTWIPVGGR*RARNAFLSGGPPFILHKSPQIQGNLRQPPLGPREGLSPRLAREKTATSLSG*CIYK 824
            Q+P    A PGMFPNM P +        P+    AMTQQATRHARRVYVGGLPP ANEQ+VA FF+QVMAAIGGNT   G AVVNVYINH+KKFAFVEMRSVEE SNAMALDGI+FEGAP +      T    S    L P+QP +P LN            GG     +    GG P+   ++ Q++  L     GP  G      +E   +     C+YK
Sbjct:  232 QLPELPAANPGMFPNMLPNLVNVPALGQPL----AMTQQATRHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGNTFALGHAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRP--TDYNPSQAAALGPSQP-NPNLNLAA--VGLTPGAGGGLEGPDRIFVGGLPYYFTEA-QVRELLE--TFGPLRGFDIVKDKETGNSKGYAFCLYK 441          
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2AF2_MOUSE (Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 9.491e-18
Identity = 55/135 (40.74%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  108 GLMGVLRLQPETIAIFGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEG 512
            G   +  +Q + +   GQIP A   +P M P+           A+   PV  +  Q TR ARR+YVG +P    E+++  FF+  M  +GG T  PG+ V+ V IN +K FAF+E RSV+ET+ AMA DGIIF+G
Sbjct:   98 GFEHITPMQYKAMQAAGQIP-ATALLPTMTPDGL---------AVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQG 221          
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2AF2_HUMAN (Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4)

HSP 1 Score: 90.8929 bits (224), Expect = 9.491e-18
Identity = 55/135 (40.74%), Postives = 77/135 (57.04%), Query Frame = 3
Query:  108 GLMGVLRLQPETIAIFGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEG 512
            G   +  +Q + +   GQIP A   +P M P+           A+   PV  +  Q TR ARR+YVG +P    E+++  FF+  M  +GG T  PG+ V+ V IN +K FAF+E RSV+ET+ AMA DGIIF+G
Sbjct:   98 GFEHITPMQYKAMQAAGQIP-ATALLPTMTPDGL---------AVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQG 221          
The following BLAST results are available for this feature:
BLAST of EY680486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
U2A2B_NICPL7.183e-5874.07Splicing factor U2af large subunit B OS=Nicotiana ... [more]
U2A2A_NICPL1.355e-5672.56Splicing factor U2af large subunit A OS=Nicotiana ... [more]
U2A2A_ARATH5.148e-5673.13Splicing factor U2af large subunit A OS=Arabidopsi... [more]
U2A2B_ARATH8.781e-5655.98Splicing factor U2af large subunit B OS=Arabidopsi... [more]
U2A2B_ORYSJ1.773e-4855.86Splicing factor U2af large subunit B OS=Oryza sati... [more]
U2A2B_WHEAT4.368e-4768.42Splicing factor U2af large subunit B OS=Triticum a... [more]
U2A2A_ORYSJ2.168e-4653.36Splicing factor U2af large subunit A OS=Oryza sati... [more]
U2A2A_WHEAT1.042e-4049.55Splicing factor U2af large subunit A OS=Triticum a... [more]
U2AF2_MOUSE9.491e-1840.74Splicing factor U2AF 65 kDa subunit OS=Mus musculu... [more]
U2AF2_HUMAN9.491e-1840.74Splicing factor U2AF 65 kDa subunit OS=Homo sapien... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-011-F02-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680486 ID=EY680486; Name=EY680486; organism=Citrus sinensis; type=EST; length=831bp
CCACGCGTCCGGTAAGAAGGCAATGTTGGGCTACTTGCCCCACTGTGCTG
ACAATGGGCGTGAGCCGACTTCTGTAGCTTTTATGTACAAGGAGGAATCA
TTGCACTGGTTTGATGGGTGTTCTTCGTCTTCAACCGGAAACTATTGCCA
TTTTTGGTCAAATTCCTGGGGCTAATCCGGCAATCCCTGGAATGTTTCCG
AACATGTTTCCTTTGGTGACTGGTCAGCAGTTTGGTGCTCTTCCTGTTAT
GCCAGTTCAGGCAATGACTCAGCAGGCTACTAGGCATGCCCGCCGTGTCT
ATGTTGGAGGACTCCCCCCTACAGCAAATGAACAGTCTGTAGCAACTTTC
TTTAGCCAGGTTATGGCAGCAATTGGAGGAAACACAGCTGGTCCAGGGGA
TGCTGTTGTCAATGTGTACATAAACCACGAAAAGAAGTTTGCCTTTGTGG
AGATGAGATCTGTGGAGGAAACCAGTAATGCTATGGCTTTAGATGGAATT
ATTTTTGAGGGAGCCCCCTGTGAAGGTGAGGAGACCCAGTGAACTACAAC
CCCCTCCTCTTGGCTGCAACACTTGGTCCCCACCCAGCCCCAATCCCCAA
TCCTAAACTGGCTTGGCGGTTGGGCCAACACCTGGATTCCGGTGGGGGGG
CGCTGACGGGCCAGAAACGCCTTTTTGTCCGGTGGGCCACCCTTCATACT
TCACAAAAGCCCACAAATTCAGGGAAATTTGCGGCAGCCCCCTTTGGGGC
CCCGTGAAGGGCTTTCACCACGCCTAGCACGAGAAAAAACTGCGACCAGT
CTCAGCGGCTAATGCATTTATAAGTAAATCC
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