EY680486
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2A2B_NICPL (Splicing factor U2af large subunit B OS=Nicotiana plumbaginifolia GN=U2AF65B PE=2 SV=1) HSP 1 Score: 224.172 bits (570), Expect = 7.183e-58 Identity = 120/162 (74.07%), Postives = 129/162 (79.63%), Query Frame = 3 Query: 135 PETIAIFGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEGAPCEGEETQ*TTTPSSWLQHLV----PTQPQSPILN 608 P A GQ+PG NP IPGMFPNMFPL +GQ FGALPVMP+QAMTQQATRHARRVYVGGLP ANEQSVATFFS VM+AIGGNTAGPGDAVVNVYIN+EKKFAFVEMRSVEE SNAMALDGIIFEGAPC+ PS + L P+QP +P LN Sbjct: 188 PGITAAAGQVPGTNPPIPGMFPNMFPLASGQ-FGALPVMPIQAMTQQATRHARRVYVGGLPAHANEQSVATFFSHVMSAIGGNTAGPGDAVVNVYINYEKKFAFVEMRSVEEASNAMALDGIIFEGAPCK------VRRPSDYNPSLAATLGPSQP-NPNLN 341
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2A2A_NICPL (Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia GN=U2AF65A PE=2 SV=1) HSP 1 Score: 219.935 bits (559), Expect = 1.355e-56 Identity = 119/164 (72.56%), Postives = 127/164 (77.44%), Query Frame = 3 Query: 129 LQPETIAIFGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEGAPCEGEETQ*TTTPSSWLQHLV----PTQPQSPILN 608 L P GQ+PG NPAIPG+F NMFPL + Q FGALP+MPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFS VM AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEE SNAMALDG+IFEG P + PS + L P+QP SP LN Sbjct: 168 LLPGATDAAGQVPGTNPAIPGLFSNMFPLASSQ-FGALPMMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSHVMYAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGVIFEGGPVK------VRRPSDYNPSLAATLGPSQP-SPNLN 323
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2A2A_ARATH (Splicing factor U2af large subunit A OS=Arabidopsis thaliana GN=U2AF65A PE=2 SV=2) HSP 1 Score: 218.009 bits (554), Expect = 5.148e-56 Identity = 117/160 (73.12%), Postives = 127/160 (79.38%), Query Frame = 3 Query: 147 AIFGQIPGANPAIPG--MFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEGAPCEGEETQ*TTTPSSWLQHLV----PTQPQSPILN 608 A+ GQ+P A P +PG MFPNMFPL TGQ FG L +MP+QAMTQQATRHARRVYVGGL PTANEQSVATFFSQVMAA+GGNTAGPGDAVVNVYINHEKKFAFVEMRSVEE SNAM+LDGIIFEGAP + PS + L P+QP SP LN Sbjct: 189 AVTGQVPPAPPTLPGAGMFPNMFPLPTGQSFGGLSMMPIQAMTQQATRHARRVYVGGLSPTANEQSVATFFSQVMAAVGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMSLDGIIFEGAPVK------VRRPSDYNPSLAATLGPSQP-SPHLN 341
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2A2B_ARATH (Splicing factor U2af large subunit B OS=Arabidopsis thaliana GN=U2AF65B PE=2 SV=2) HSP 1 Score: 217.238 bits (552), Expect = 8.781e-56 Identity = 131/234 (55.98%), Postives = 149/234 (63.68%), Query Frame = 3 Query: 129 LQPETIAIFGQIPGA--NPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEGAPCEGEETQ*TTTPSSWLQHLVPTQPQSPILNWLGGWANTWIPVGGR*RARNAFLSGGPPFILHKSPQIQGNLRQPPLGPREGLSPRLAREKTATSLSG*CIYK 824 L +A GQ+P IPGMF NMFP+V GQQ GALPV+PVQAMTQQATRHARRVYVGGLPPTANEQSV+TFFSQVM+AIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEE SNAMALDGII EG P + T S L P+QP +P LN LG + GG F+ G P + ++Q GP G + RE + C+Y+ Sbjct: 199 LAATAVAAAGQVPSVPTTATIPGMFSNMFPMVPGQQLGALPVLPVQAMTQQATRHARRVYVGGLPPTANEQSVSTFFSQVMSAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEEASNAMALDGIILEGVPVKVRRP--TDYNPSLAATLGPSQP-NPNLN-LGAVGLSSGSTGGLEGPDRIFVGGLPYYF----TEVQIRELLESFGPLRGFNLVKDRETGNSKGYAFCVYQ 424
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2A2B_ORYSJ (Splicing factor U2af large subunit B OS=Oryza sativa subsp. japonica GN=U2AF65B PE=2 SV=2) HSP 1 Score: 192.971 bits (489), Expect = 1.773e-48 Identity = 124/222 (55.86%), Postives = 140/222 (63.06%), Query Frame = 3 Query: 159 QIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEGAPCEGEETQ*TTTPSSWLQHLVPTQPQSPILNWLGGWANTWIPVGGR*RARNAFLSGGPPFILHKSPQIQGNLRQPPLGPREGLSPRLAREKTATSLSG*CIYK 824 Q PG AIPGMFPNM P+ GQ F L + P QAMTQQATRHARRVYVGGLPPTANEQSVA +F+QVMAAIGGNTAGPGDAV+NVYINH+KKFAFVEMRSVEE SNAMALDGI+FEGAP + T S L P+QP SP LN L T GG F+ G P + Q++ L GP G RE + C+Y+ Sbjct: 174 QFPGT--AIPGMFPNMLPMGVGQ-FNPLVIQP-QAMTQQATRHARRVYVGGLPPTANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRP--TDYNPSLAAALGPSQP-SPNLN-LAAVGLTPGSAGGLEGPDRIFVGGLPYYF--TEAQVRELLES--FGPLRGFDLVKDRETGNSKGYAFCVYQ 383
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2A2B_WHEAT (Splicing factor U2af large subunit B OS=Triticum aestivum GN=U2AF65B PE=2 SV=1) HSP 1 Score: 188.348 bits (477), Expect = 4.368e-47 Identity = 104/152 (68.42%), Postives = 116/152 (76.32%), Query Frame = 3 Query: 141 TIAIFGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEGAPCEGEETQ*TTTPSSWLQHLVPTQPQS 596 TI Q+PG++ IPGMFPNM P GQ L + P QAMTQQATRHARRVYVGGLPP+ANEQSVA +F+QVMAAIGGNTAGPGDAV+NVYINH+KKFAFVEMRSVEE SNAMALDGI+FEGAP + T S L P+QP S Sbjct: 161 TIPTPSQLPGSS--IPGMFPNMLPFADGQ-INPLVMQP-QAMTQQATRHARRVYVGGLPPSANEQSVAIYFNQVMAAIGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGILFEGAPVKVRRP--TDYNPSLAAALGPSQPSS 306
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2A2A_ORYSJ (Splicing factor U2af large subunit A OS=Oryza sativa subsp. japonica GN=U2AF65A PE=2 SV=2) HSP 1 Score: 186.037 bits (471), Expect = 2.168e-46 Identity = 119/223 (53.36%), Postives = 138/223 (61.88%), Query Frame = 3 Query: 156 GQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEGAPCEGEETQ*TTTPSSWLQHLVPTQPQSPILNWLGGWANTWIPVGGR*RARNAFLSGGPPFILHKSPQIQGNLRQPPLGPREGLSPRLAREKTATSLSG*CIYK 824 GQ+P PAI GM PNMF L T F L + P QAMTQQATRHARRVYVGGLPPTANE +VA +F+QVMAA+GGNTAGPGDAV+NVYINH+KKFAFVEMRSVEE SNAMALDGI+FEGAP + T S L P+QP +P LN L T GG F+ G P + Q++ L GP G RE + C+Y+ Sbjct: 195 GQVPVVAPAISGMLPNMFNL-TQTPFTPLVIQP-QAMTQQATRHARRVYVGGLPPTANEHTVAVYFNQVMAAVGGNTAGPGDAVLNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRP--TDYNPSLAAALGPSQP-NPNLN-LAAVGLTPGSAGGLEGPDRIFVGGLPYYF--TEAQVRELLES--FGPLRGFDLVKDRETGNSKGYAFCVYQ 407
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2A2A_WHEAT (Splicing factor U2af large subunit A OS=Triticum aestivum GN=U2AF65A PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 1.042e-40 Identity = 110/222 (49.55%), Postives = 129/222 (58.11%), Query Frame = 3 Query: 159 QIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEGAPCEGEETQ*TTTPSSWLQHLVPTQPQSPILNWLGGWANTWIPVGGR*RARNAFLSGGPPFILHKSPQIQGNLRQPPLGPREGLSPRLAREKTATSLSG*CIYK 824 Q+P A PGMFPNM P + P+ AMTQQATRHARRVYVGGLPP ANEQ+VA FF+QVMAAIGGNT G AVVNVYINH+KKFAFVEMRSVEE SNAMALDGI+FEGAP + T S L P+QP +P LN GG + GG P+ ++ Q++ L GP G +E + C+YK Sbjct: 232 QLPELPAANPGMFPNMLPNLVNVPALGQPL----AMTQQATRHARRVYVGGLPPIANEQTVAVFFNQVMAAIGGNTFALGHAVVNVYINHDKKFAFVEMRSVEEASNAMALDGIMFEGAPVKVRRP--TDYNPSQAAALGPSQP-NPNLNLAA--VGLTPGAGGGLEGPDRIFVGGLPYYFTEA-QVRELLE--TFGPLRGFDIVKDKETGNSKGYAFCLYK 441
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2AF2_MOUSE (Splicing factor U2AF 65 kDa subunit OS=Mus musculus GN=U2af2 PE=1 SV=3) HSP 1 Score: 90.8929 bits (224), Expect = 9.491e-18 Identity = 55/135 (40.74%), Postives = 77/135 (57.04%), Query Frame = 3 Query: 108 GLMGVLRLQPETIAIFGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEG 512 G + +Q + + GQIP A +P M P+ A+ PV + Q TR ARR+YVG +P E+++ FF+ M +GG T PG+ V+ V IN +K FAF+E RSV+ET+ AMA DGIIF+G Sbjct: 98 GFEHITPMQYKAMQAAGQIP-ATALLPTMTPDGL---------AVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQG 221
BLAST of EY680486 vs. ExPASy Swiss-Prot
Match: U2AF2_HUMAN (Splicing factor U2AF 65 kDa subunit OS=Homo sapiens GN=U2AF2 PE=1 SV=4) HSP 1 Score: 90.8929 bits (224), Expect = 9.491e-18 Identity = 55/135 (40.74%), Postives = 77/135 (57.04%), Query Frame = 3 Query: 108 GLMGVLRLQPETIAIFGQIPGANPAIPGMFPNMFPLVTGQQFGALPVMPVQAMTQQATRHARRVYVGGLPPTANEQSVATFFSQVMAAIGGNTAGPGDAVVNVYINHEKKFAFVEMRSVEETSNAMALDGIIFEG 512 G + +Q + + GQIP A +P M P+ A+ PV + Q TR ARR+YVG +P E+++ FF+ M +GG T PG+ V+ V IN +K FAF+E RSV+ET+ AMA DGIIF+G Sbjct: 98 GFEHITPMQYKAMQAAGQIP-ATALLPTMTPDGL---------AVTPTPVPVVGSQMTRQARRLYVGNIPFGITEEAMMDFFNAQMR-LGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAMAFDGIIFQG 221 The following BLAST results are available for this feature:
BLAST of EY680486 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 11
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Sequences
The
following sequences are available for this feature:
EST sequence >EY680486 ID=EY680486; Name=EY680486; organism=Citrus sinensis; type=EST; length=831bpback to top |