CX077090

Overview
NameCX077090
Unique NameCX077090
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX077090 vs. ExPASy Swiss-Prot
Match: PRT1_ARATH (E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana GN=PRT1 PE=2 SV=2)

HSP 1 Score: 185.267 bits (469), Expect = 2.803e-46
Identity = 91/192 (47.40%), Postives = 117/192 (60.94%), Query Frame = 2 
Query:  101 EHKAENWVSVDDLSCAACKKMLFKPVVLNCGHVFCELCLV--VPEDGNFKCPNCQSLQPYGLPSVCLIIEHFLEERFSDLYAERKEALLKQTSGATQARHRKNRSASF----PKLVYASL----WLGN-GPKIHFGVGCDYCGMSPIIGERYKCKDCVESIGFDLCEACHNNPAKVPGRFNQQHKPEHKFEI 643
            ++K    +S DDL C+ACK++L +PVVLNCGHV+CE C+V    E    KC  C    P G P VCLI+E  LEE F + Y  R   + K     T A + K    S+    P L   +     WL N G  +HFG GCD CG+ PIIG+RY+CKDC E IG+DLC+ C+  P+KVPGRFNQQH P+H+ E+
Sbjct:  178 DNKVSKQISKDDLLCSACKELLVRPVVLNCGHVYCEGCVVDMAEESEKIKCQECNVCDPRGFPKVCLILEQLLEENFPEEYNSRSSKVQK-----TLAHNSKGNIQSYLKEGPSLSNDNNNDDPWLANPGSNVHFGAGCDSCGVYPIIGDRYRCKDCKEEIGYDLCKDCYETPSKVPGRFNQQHTPDHRLEL 364
The following BLAST results are available for this feature:
BLAST of CX077090 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
PRT1_ARATH2.803e-4647.40E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis th... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_54C06_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-54C06-E12-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX077090 ID=CX077090; Name=CX077090; organism=Citrus sinensis; type=EST; length=703bp
TGGAGATGATGCAATGCTGAAATTGGTGACATCTTCAGAATGCTCTGAAG
CCACTGCAAATTCAACTGCCCAAGAATGTGGTTTGGTTGGAAATGATCTT
GAACATAAAGCTGAAAACTGGGTCTCAGTTGATGATTTATCTTGCGCTGC
ATGCAAGAAGATGCTCTTTAAGCCAGTTGTTCTTAACTGTGGACATGTGT
TTTGTGAACTTTGTTTGGTTGTTCCTGAAGATGGAAATTTTAAGTGCCCA
AATTGTCAAAGCTTGCAGCCTTATGGGCTCCCTAGTGTGTGTTTGATTAT
AGAGCATTTCTTGGAGGAGCGGTTTTCTGATTTATATGCAGAGAGAAAGG
AAGCTTTATTGAAACAAACCAGTGGTGCAACACAGGCTCGACATCGGAAA
AATCGATCAGCTTCATTCCCTAAACTTGTTTACGCGTCATTGTGGCTTGG
CAATGGGCCTAAGATCCATTTTGGAGTGGGTTGTGATTATTGTGGGATGT
CTCCTATAATTGGGGAGAGATACAAATGCAAAGACTGTGTGGAGTCAATA
GGTTTTGACCTGTGTGAAGCATGCCACAATAATCCTGCTAAGGTTCCAGG
TCGATTCAATCAACAGCACAAACCAGAACACAAGTTTGAAATCATGCAAC
CAACAAGCTTAAGTGATCTGGTAAATAGGATCAATTCTGATATGTCTGAT
GAT
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