EY702147

Overview
NameEY702147
Unique NameEY702147
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length892
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY702147_ssr188 microsatellite EY702147_ssr188:188..199. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY702147 vs. ExPASy Swiss-Prot
Match: SRS1_ORYSJ (Salt stress root protein RS1 OS=Oryza sativa subsp. japonica GN=Os01g0233000 PE=2 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.019e-21
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 2 
Query:  128 WKSKVLPRIKKVFEKNGTKKAAAAEACKSFDDSXXXXXXXXXXXXXXLQPKVVEIYEASSAEIKTLVKDRKEDG-LKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFI 508
            WK+KVL  + K+F+K+G KKAAAAE  KSF+                L+PKVVE+ E+S  EIK L+KD+K    +KK+  AV K LEEL KI+FPG+K VS+A +K G   +   + FI EKV+ F+
Sbjct:    5 WKTKVLTGLNKLFDKDG-KKAAAAEFLKSFNKEEIGKEIDDKKTE--LEPKVVEVVESSPPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVAPFV 129
[Close]
BLAST of EY702147 vs. ExPASy Swiss-Prot
Match: SRS1_ORYSI (Salt stress root protein RS1 OS=Oryza sativa subsp. indica GN=OsI_001009 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.019e-21
Identity = 60/128 (46.88%), Postives = 81/128 (63.28%), Query Frame = 2 
Query:  128 WKSKVLPRIKKVFEKNGTKKAAAAEACKSFDDSXXXXXXXXXXXXXXLQPKVVEIYEASSAEIKTLVKDRKEDG-LKKHSTAVHKLLEELVKIEFPGSKAVSEASSKFGAASVPGPVFFIFEKVSTFI 508
            WK+KVL  + K+F+K+G KKAAAAE  KSF+                L+PKVVE+ E+S  EIK L+KD+K    +KK+  AV K LEEL KI+FPG+K VS+A +K G   +   + FI EKV+ F+
Sbjct:    5 WKTKVLTGLNKLFDKDG-KKAAAAEFLKSFNKEEIGKEIDDKKTE--LEPKVVEVVESSPPEIKALLKDKKTASKIKKNGPAVTKFLEELAKIDFPGAKPVSDAVAKSGTTPLSPAIAFILEKVAPFV 129
The following BLAST results are available for this feature:
BLAST of EY702147 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SRS1_ORYSJ6.019e-2146.88Salt stress root protein RS1 OS=Oryza sativa subsp... [more]
SRS1_ORYSI6.019e-2146.88Salt stress root protein RS1 OS=Oryza sativa subsp... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-701-001-F02-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702147 ID=EY702147; Name=EY702147; organism=Citrus sinensis; type=EST; length=892bp
CCACGCGTCCGTAGCTATTCATATTCTTTTAGCAAACTTCTGCTTGCTGC
ACCAAGCCACCAACTCAACTCAGATTTTTCTTTCAGAGGGACTCATTTGA
TTGGAAAAAAGAAGAAAGATGGGGTACTGGAAATCCAAGGTCCTCCCAAG
GATCAAGAAAGTTTTCGAGAAAAACGGAACCAAGAAAGCTGCTGCTGCTG
AGGCTTGCAAGTCCTTTGATGATTCAAAGGAAGAAATCAATAAAGAGTTT
GAAGAGAAGAAGCCTGAGCTCCAACCTAAAGTGGTCGAAATCTATGAAGC
TTCTTCAGCTGAAATCAAGACCCTGGTCAAGGATCGCAAGGAGGATGGAC
TTAAGAAGCACTCCACTGCTGTGCACAAGTTACTTGAAGAACTCGTTAAA
ATCGAGTTTCCAGGATCAAAAGCAGTAAGTGAAGCATCGTCAAAGTTTGG
GGCAGCCTCTGTTCCGGGGCCAGTTTTCTTCATATTTGAGAAGGTCTCAA
CGTTTATTGTTACTGAAGAAAAAGCAGCAGAGCCAGCAACCGCCGCAGCA
GGAGAAGAAACAAAACCAGAACAAGAGACACCAGTAGTAGTACCGCCGCA
GTCACAGAGAAAGACGACGTATTTGTTGAAGAAGAGAGAAAAGAAAGGCC
CCCGCCGGCCCTGAGAAAACTGAGCCGGCAAAAACCCGCGCCGGCCCACC
CCAACTGAGCCTTCTTCTGGCGCCGCCAAGGAGGACCCACCAGCTGCTGC
AGAGCCACAAAAGCCTTGAAAACTGCATTAACTGACAAAACAAATTCTAT
CCATATATACCTAAATAATATTTTCATATTCTCAAGGGAAAGGGAAGAAT
ATATGTATTATTTGGGGACCTAAAAGTCTTGTAAATGCAAAA
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