CX076966

Overview
NameCX076966
Unique NameCX076966
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length427
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX076966 vs. ExPASy Swiss-Prot
Match: RK1_ARATH (50S ribosomal protein L1, chloroplastic OS=Arabidopsis thaliana GN=RPL1 PE=1 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 1.552e-67
Identity = 127/142 (89.44%), Postives = 136/142 (95.77%), Query Frame = 1
Query:    1 DQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIE 426
            DQQLRATVSLPKGTG++V VAVLAQGEK DEAK+AGAD+VG DDLIEQIKGGFMEFDKLIASPDMMVKVA LGKILGPRGLMPNPKAGTVT NIPQAIEEFKKGKVE+RADKTGIVHIPFGK +F+E+DLLINFLAAVKS+E
Sbjct:  164 DQQLRATVSLPKGTGQTVIVAVLAQGEKVDEAKSAGADIVGSDDLIEQIKGGFMEFDKLIASPDMMVKVAGLGKILGPRGLMPNPKAGTVTANIPQAIEEFKKGKVEFRADKTGIVHIPFGKVNFTEEDLLINFLAAVKSVE 305          
BLAST of CX076966 vs. ExPASy Swiss-Prot
Match: RK1_SPIOL (50S ribosomal protein L1, chloroplastic OS=Spinacia oleracea GN=RPL1 PE=1 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 1.273e-61
Identity = 113/142 (79.58%), Postives = 129/142 (90.85%), Query Frame = 1
Query:    1 DQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIE 426
            DQQLRATVSLPKGTGK+VK+AVLAQG+K DEAK AGAD+VGG++LIEQIKGGFM+FDKLIA+ DMM KVASLG+ILGPRGLMP PKAGTVT N+ QA+EEFKKGKVE+R DKTGIVHIPFGK +F E+DLLIN  A +KS+E
Sbjct:  170 DQQLRATVSLPKGTGKTVKIAVLAQGDKIDEAKAAGADIVGGEELIEQIKGGFMDFDKLIATSDMMAKVASLGRILGPRGLMPTPKAGTVTPNVAQAVEEFKKGKVEFRVDKTGIVHIPFGKLNFEEEDLLINLFATIKSVE 311          
BLAST of CX076966 vs. ExPASy Swiss-Prot
Match: RK1_RHDSA (50S ribosomal protein L1, chloroplastic OS=Rhodomonas salina GN=rpl1 PE=3 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 4.248e-49
Identity = 94/142 (66.20%), Postives = 117/142 (82.39%), Query Frame = 1
Query:    1 DQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIE 426
            DQQLR T+ LPKGTGK V++AV+AQGEK +EA  AGADL G +DLI+ I  G ++FD+LIA+PDMM  +A LGK+LGPRGLMP+PK+GTVT +I +AI+EFKKGK+EYRADK+GIVHI FGK DFS +DLL N  A  +SI+
Sbjct:   55 DQQLRTTLVLPKGTGKKVRIAVVAQGEKINEALAAGADLAGAEDLIQNIMKGDLDFDRLIATPDMMPAIAKLGKVLGPRGLMPSPKSGTVTADIKEAIDEFKKGKLEYRADKSGIVHILFGKTDFSVEDLLANLEAVQESID 196          
BLAST of CX076966 vs. ExPASy Swiss-Prot
Match: RL1_THEEB (50S ribosomal protein L1 OS=Thermosynechococcus elongatus (strain BP-1) GN=rplA PE=3 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 5.547e-49
Identity = 92/142 (64.79%), Postives = 122/142 (85.92%), Query Frame = 1
Query:    1 DQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIE 426
            DQQLR TV+LPKGTG++++VAV+A+GEK  EA  AGAD+VG ++LI++I+ G M+FD LIA+PDMM +VA +G+ILGPRGLMP+PKAGTVT ++PQAI+EFK GKVE+RAD++GIVH+ FGKA FS +DLL+N  A  +SI+
Sbjct:   55 DQQLRTTVALPKGTGQTIRVAVIARGEKVTEASAAGADVVGSEELIDEIQKGRMDFDLLIATPDMMPQVAKVGRILGPRGLMPSPKAGTVTFDLPQAIQEFKAGKVEFRADRSGIVHVLFGKASFSAEDLLVNLKALQESID 196          
BLAST of CX076966 vs. ExPASy Swiss-Prot
Match: RK1_GUITH (50S ribosomal protein L1, chloroplastic OS=Guillardia theta GN=rpl1 PE=3 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 7.245e-49
Identity = 91/142 (64.08%), Postives = 117/142 (82.39%), Query Frame = 1
Query:    1 DQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIE 426
            DQQLR T+ LPKGTGK +++AV+A+GEK  EA NAGADL G  DL++ I  G ++FD+LIA+PDMM  +A LGK+LGPRGLMP+PK+GTVT+++  AIEEFKKGK+EYRADK+GIVHI FGK +FS +DLL+N  A  +SI+
Sbjct:   55 DQQLRTTLVLPKGTGKKIRIAVIAEGEKATEAINAGADLAGSTDLVQDIMKGMLDFDRLIATPDMMPLIAKLGKVLGPRGLMPSPKSGTVTSDVKSAIEEFKKGKLEYRADKSGIVHISFGKTNFSVNDLLLNLEAVQESID 196          
BLAST of CX076966 vs. ExPASy Swiss-Prot
Match: RL1_SYNR3 (50S ribosomal protein L1 OS=Synechococcus sp. (strain RCC307) GN=rplA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.108e-48
Identity = 89/142 (62.68%), Postives = 117/142 (82.39%), Query Frame = 1
Query:    1 DQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIE 426
            DQQLR TV+LPKGTG+S+++AV+ +GEK  EAK AGA+LVG ++L++ I GG M+FD LIA+PDMM KVA LG++LGPRGLMPNPK GTVTT++  AI EFK GK+E+RAD++GIVH+ FGKA FS DDLL N  +  ++++
Sbjct:   55 DQQLRTTVALPKGTGRSIRIAVITRGEKVAEAKAAGAELVGDEELVDSIAGGQMDFDLLIATPDMMPKVAKLGRVLGPRGLMPNPKTGTVTTDVTNAINEFKAGKLEFRADRSGIVHVQFGKASFSADDLLENLKSVQETVD 196          
BLAST of CX076966 vs. ExPASy Swiss-Prot
Match: RL1_MICAN (50S ribosomal protein L1 OS=Microcystis aeruginosa (strain NIES-843) GN=rplA PE=3 SV=1)

HSP 1 Score: 190.66 bits (483), Expect = 2.108e-48
Identity = 91/142 (64.08%), Postives = 117/142 (82.39%), Query Frame = 1
Query:    1 DQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIE 426
            DQQLR TVSLPKGTG++V+VAV+ +GEK  EA NAGAD+VG ++LIE+I  G M+F+ LIA+PDMM KVA LG+ LGPRGLMP+PK GTVTT++  AI EFK GK+E+RAD+TGIVH+ FGKA FS +DLL+N  A  ++++
Sbjct:   56 DQQLRTTVSLPKGTGRTVRVAVITRGEKVQEANNAGADIVGSEELIEEIAKGMMDFEVLIATPDMMPKVAKLGRQLGPRGLMPSPKGGTVTTDLTGAIAEFKAGKLEFRADRTGIVHVQFGKASFSAEDLLVNLKALQETVD 197          
BLAST of CX076966 vs. ExPASy Swiss-Prot
Match: RL1_ANASP (50S ribosomal protein L1 OS=Anabaena sp. (strain PCC 7120) GN=rplA PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 4.696e-48
Identity = 91/142 (64.08%), Postives = 119/142 (83.80%), Query Frame = 1
Query:    1 DQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIE 426
            DQQLR TV+LPKGTG+ V+VAV+A+GEK  EA NAGAD+VG ++LI++I+ G M+FDKLIA+PD+M +VA LGK+LGPRGLMP+PK GTVT ++  AI EFK GK+E+RAD+TGIVH+ FGKA FS +DLL+N  A  ++I+
Sbjct:   56 DQQLRTTVALPKGTGQIVRVAVIARGEKVTEASNAGADVVGSEELIDEIQKGRMDFDKLIATPDVMPQVAKLGKMLGPRGLMPSPKGGTVTFDVASAIAEFKAGKLEFRADRTGIVHVMFGKASFSPEDLLVNLKALQETID 197          
BLAST of CX076966 vs. ExPASy Swiss-Prot
Match: RK1_PORPU (50S ribosomal protein L1, chloroplastic OS=Porphyra purpurea GN=rpl1 PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 6.133e-48
Identity = 90/142 (63.38%), Postives = 116/142 (81.69%), Query Frame = 1
Query:    1 DQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIE 426
            DQQLRATV LPKGTGK VKVAV+A+GEK  EA NAGAD+ G ++LI++I  G ++FDKLIA+PD+M  +A LG++LGPRGLMP+PKAGTVT +I ++I EFK GKVEYR D+TGI+H+PFGK+ F E+DL++N      SI+
Sbjct:   55 DQQLRATVILPKGTGKLVKVAVIAKGEKLTEAMNAGADISGSEELIDEISKGRLDFDKLIATPDIMPLIAKLGRVLGPRGLMPSPKAGTVTLDITKSINEFKGGKVEYRVDRTGIIHVPFGKSSFPEEDLVMNLQTIKDSID 196          
BLAST of CX076966 vs. ExPASy Swiss-Prot
Match: RL1_SYNY3 (50S ribosomal protein L1 OS=Synechocystis sp. (strain PCC 6803) GN=rplA PE=3 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 8.010e-48
Identity = 91/142 (64.08%), Postives = 116/142 (81.69%), Query Frame = 1
Query:    1 DQQLRATVSLPKGTGKSVKVAVLAQGEKFDEAKNAGADLVGGDDLIEQIKGGFMEFDKLIASPDMMVKVASLGKILGPRGLMPNPKAGTVTTNIPQAIEEFKKGKVEYRADKTGIVHIPFGKADFSEDDLLINFLAAVKSIE 426
            DQQ+R TVSLPKGTG++V+VAVLA+GEK  EA +AGAD+ G ++LIE+I+ G M+FD LIA+PDMM K+A LGK LGPRGLMP+PK GTVT ++  A+ EFK GK+E+RAD+TGIVH+ FGKA FS DDLL N  A  ++I+
Sbjct:   57 DQQIRTTVSLPKGTGQTVRVAVLARGEKVKEATDAGADIAGSEELIEEIQKGMMDFDVLIATPDMMPKIARLGKQLGPRGLMPSPKGGTVTADLAAAVNEFKAGKLEFRADRTGIVHVMFGKASFSADDLLANLKALQETID 198          
The following BLAST results are available for this feature:
BLAST of CX076966 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RK1_ARATH1.552e-6789.4450S ribosomal protein L1, chloroplastic OS=Arabido... [more]
RK1_SPIOL1.273e-6179.5850S ribosomal protein L1, chloroplastic OS=Spinaci... [more]
RK1_RHDSA4.248e-4966.2050S ribosomal protein L1, chloroplastic OS=Rhodomo... [more]
RL1_THEEB5.547e-4964.7950S ribosomal protein L1 OS=Thermosynechococcus el... [more]
RK1_GUITH7.245e-4964.0850S ribosomal protein L1, chloroplastic OS=Guillar... [more]
RL1_SYNR32.108e-4862.6850S ribosomal protein L1 OS=Synechococcus sp. (str... [more]
RL1_MICAN2.108e-4864.0850S ribosomal protein L1 OS=Microcystis aeruginosa... [more]
RL1_ANASP4.696e-4864.0850S ribosomal protein L1 OS=Anabaena sp. (strain P... [more]
RK1_PORPU6.133e-4863.3850S ribosomal protein L1, chloroplastic OS=Porphyr... [more]
RL1_SYNY38.010e-4864.0850S ribosomal protein L1 OS=Synechocystis sp. (str... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS08_53D03_g Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-53D03-G5-1-5.g, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX076966 ID=CX076966; Name=CX076966; organism=Citrus sinensis; type=EST; length=427bp
GATCAACAGCTTAGAGCAACAGTGAGTTTACCCAAGGGAACTGGAAAATC
TGTTAAGGTGGCTGTTCTTGCTCAAGGTGAAAAGTTCGATGAAGCAAAAA
ATGCAGGAGCAGATTTGGTTGGTGGTGATGACTTGATTGAACAAATAAAA
GGAGGATTCATGGAGTTCGACAAGCTAATTGCTTCACCAGATATGATGGT
TAAGGTTGCCAGCCTAGGAAAAATTCTTGGACCACGGGGACTCATGCCAA
ATCCTAAAGCTGGTACTGTTACAACTAACATACCTCAGGCCATAGAAGAA
TTCAAGAAGGGAAAAGTTGAATATAGAGCAGATAAAACTGGGATTGTCCA
CATACCTTTTGGGAAAGCTGATTTTTCTGAAGATGACCTCCTCATAAACT
TCCTTGCTGCTGTTAAATCAATTGAAG
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