EY702143

Overview
NameEY702143
Unique NameEY702143
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Sweet orange fruit, development stadium (2 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB4C_ARATH (Chlorophyll a-b binding protein CP29.3, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.3 PE=1 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.244e-38
Identity = 73/89 (82.02%), Postives = 85/89 (95.51%), Query Frame = 2
Query:   23 FSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFN 289
            FSLTTLIWIEV+V+GYIE+QRN+ELDP KR+YPGGYFDPLGLA+DP KL+ L+LAEIKH+RLAMVAFLIF +QAAFTGKGP+SF+ATFN
Sbjct:  187 FSLTTLIWIEVLVVGYIEFQRNSELDPEKRIYPGGYFDPLGLAADPEKLDTLKLAEIKHSRLAMVAFLIFALQAAFTGKGPVSFLATFN 275          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB4A_ARATH (Chlorophyll a-b binding protein CP29.1, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.1 PE=1 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.490e-30
Identity = 68/94 (72.34%), Postives = 78/94 (82.98%), Query Frame = 2
Query:   23 FSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PI 301
            FS++TLIWIEV+VIGYIE+QRNAELD  KRLYPGG +FDPLGLA+DP K   LQLAEIKHARLAMVAFL F +QAA TGKGP++  AT    P+
Sbjct:  186 FSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLAADPEKTAQLQLAEIKHARLAMVAFLGFAVQAAATGKGPLNNWATHLSDPL 279          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB4B_ARATH (Chlorophyll a-b binding protein CP29.2, chloroplastic OS=Arabidopsis thaliana GN=LHCB4.2 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 5.547e-30
Identity = 68/94 (72.34%), Postives = 77/94 (81.91%), Query Frame = 2
Query:   23 FSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGG-YFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PI 301
            FS++TLIWIEV+VIGYIE+QRNAELD  KRLYPGG +FDPLGLASDP K   LQLAEIKHARLAMV FL F +QAA TGKGP++  AT    P+
Sbjct:  183 FSISTLIWIEVLVIGYIEFQRNAELDSEKRLYPGGKFFDPLGLASDPVKKAQLQLAEIKHARLAMVGFLGFAVQAAATGKGPLNNWATHLSDPL 276          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB29_CHLRE (Chlorophyll a-b binding protein CP29 OS=Chlamydomonas reinhardtii GN=Lhcb4 PE=1 SV=3)

HSP 1 Score: 99.7525 bits (247), Expect = 1.369e-20
Identity = 51/89 (57.30%), Postives = 65/89 (73.03%), Query Frame = 2
Query:   23 FSLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLAS-DPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATF 286
            FS+T LIWIEVI++G  E+ RN+E +P KR YPGG FDPL LAS D  +   L+ AEIKHARLAMV+F  +G+QA  TG+G +  +A F
Sbjct:  182 FSITQLIWIEVILVGGAEFYRNSETNPEKRCYPGGVFDPLKLASEDEERAFRLKTAEIKHARLAMVSFFGYGVQALSTGEGALGSLAKF 270          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB121_HORVU (Chlorophyll a-b binding protein 1B-21, chloroplastic OS=Hordeum vulgare GN=LHC Ib-21 PE=1 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.123e-17
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 2
Query:   26 SLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGI-QAAFTGKGPISFVAT 283
            +L T++ IE + I + E QR  E DP K+ YPGG FDPLG + DP K E L+L EIK+ RLAM+AF+ F + Q+A+ G GP+  +AT
Sbjct:  137 NLPTILAIEFLAIAFAEQQRTMEKDPEKKKYPGGAFDPLGFSKDPAKFEELKLKEIKNGRLAMLAFVGFCVQQSAYPGTGPLENLAT 223          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB11_SOLLC (Chlorophyll a-b binding protein 6A, chloroplastic OS=Solanum lycopersicum GN=CAB6A PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.326e-15
Identity = 40/87 (45.98%), Postives = 61/87 (70.11%), Query Frame = 2
Query:   26 SLTTLIWIEVIVIGYIEYQRNAELDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGI-QAAFTGKGPISFVAT 283
            +L T++ IE + I ++E+QR+ E D  K+ YPGG FDPLG + DP K E L++ EIK+ RLA++A + F + Q+A+ G GP+  +AT
Sbjct:  138 TLPTILAIEFLAIAFVEHQRSMEKDSEKKKYPGGAFDPLGYSKDPAKFEELKVKEIKNGRLALLAIVGFCVQQSAYLGTGPLENLAT 224          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 3.993e-12
Identity = 43/98 (43.88%), Postives = 58/98 (59.18%), Query Frame = 2
Query:   26 SLTTLIWIEVIVIGYIEYQRNAE-LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*NFM 316
            +L   +  EV+++G  EY R    LD   +L+PGG FDPLGLA DP +   L++ EIK+ RLAM A L F IQA  TG+GP+  +A     P   N +
Sbjct:  170 NLVLAVVAEVVLLGGAEYYRITNGLDFEDKLHPGGPFDPLGLAKDPEQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNNLL 267          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.216e-12
Identity = 39/86 (45.35%), Postives = 54/86 (62.79%), Query Frame = 2
Query:   26 SLTTLIWIEVIVIGYIE-YQRNAE----LDPVKRLYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPI 268
            S+   + ++V+++G  E Y+ N      LD +  LYPGG FDPLGLA DP     L++ EIK+ RLAM + L F +QA  TGKGP+
Sbjct:  142 SIIATLAVQVVLMGLAEAYRANGGSEGFLDDLDTLYPGGPFDPLGLADDPDTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPV 227          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.897e-12
Identity = 42/95 (44.21%), Postives = 57/95 (60.00%), Query Frame = 2
Query:   41 IWI-EVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 310
            IW  +VI++G +E  R A   P+      LYPGG FDPLGLA+DP     L++ E+K+ RLAM +   F +QA  TGKGPI  +A     P++ N
Sbjct:  161 IWATQVILMGAVEGYRVAGNGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNN 255          
BLAST of EY702143 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.897e-12
Identity = 42/95 (44.21%), Postives = 57/95 (60.00%), Query Frame = 2
Query:   41 IWI-EVIVIGYIEYQRNAELDPVKR----LYPGGYFDPLGLASDPGKLENLQLAEIKHARLAMVAFLIFGIQAAFTGKGPISFVATFNQ*PIS*N 310
            IW  +VI++G +E  R A   P+      LYPGG FDPLGLA+DP     L++ EIK+ RLAM +   F +QA  TGKGP+  +A     P++ N
Sbjct:  160 IWATQVILMGAVEGYRVAGEGPLGEAEDLLYPGGSFDPLGLATDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 254          
The following BLAST results are available for this feature:
BLAST of EY702143 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 52
Match NameE-valueIdentityDescription
CB4C_ARATH3.244e-3882.02Chlorophyll a-b binding protein CP29.3, chloroplas... [more]
CB4A_ARATH2.490e-3072.34Chlorophyll a-b binding protein CP29.1, chloroplas... [more]
CB4B_ARATH5.547e-3072.34Chlorophyll a-b binding protein CP29.2, chloroplas... [more]
CB29_CHLRE1.369e-2057.30Chlorophyll a-b binding protein CP29 OS=Chlamydomo... [more]
CB121_HORVU4.123e-1750.57Chlorophyll a-b binding protein 1B-21, chloroplast... [more]
CB11_SOLLC1.326e-1545.98Chlorophyll a-b binding protein 6A, chloroplastic ... [more]
CB26_ARATH3.993e-1243.88Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB2_DUNTE5.216e-1245.35Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB22_ARATH8.897e-1244.21Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SINAL8.897e-1244.21Chlorophyll a-b binding protein 1, chloroplastic O... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-701-001-E09-CT.F Sweet orange fruit, development stadium (2 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY702143 ID=EY702143; Name=EY702143; organism=Citrus sinensis; type=EST; length=661bp
CCACGCGTCCGACCACTTCTCTTTCTCATTAACAACATTGATTTGGATTG
AAGTTATTGTGATTGGGTACATAGAATATCAAAGAAATGCAGAGCTTGAT
CCAGTGAAAAGACTATACCCTGGTGGGTATTTTGATCCTCTTGGCTTGGC
CTCAGATCCTGGGAAGCTTGAAAATCTTCAATTGGCTGAAATCAAGCACG
CTCGTCTAGCAATGGTAGCATTTTTAATCTTTGGAATCCAGGCTGCTTTT
ACTGGCAAAGGGCCCATCAGCTTTGTGGCTACATTTAACCAGTGACCCAT
TTCATAAAATTTCATGCCTTGGGTTCTCTTAATTAAGTAATTGTAAAATT
CAATATCAATACTTCACTATGGATGCTGCTACTTTTATATAATTATTGTA
TGTTATGTACTTGTTCAGCCAAATTTCATATGTAAATCACTTTCTTTTGA
GGGGACTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAANAANAANAA
AANNNAAAAAAAAAAAAAAAAGGGGGGGGCCCCCTCAAAAGGACCCAATT
TTACTTCCCGGGGGTTGCAAGGAAAAACCCCTTTTTAGGGGCCCCCAAAA
TTAATTTCCGG
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