CX076951

Overview
NameCX076951
Unique NameCX076951
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length465
Libraries
Library NameType
Parent Washington Navel Orange Callus cDNA Library UCRCS08-2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX076951 vs. ExPASy Swiss-Prot
Match: BAK1_ARATH (BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 OS=Arabidopsis thaliana GN=BAK1 PE=1 SV=2)

HSP 1 Score: 75.485 bits (184), Expect = 1.245e-13
Identity = 38/70 (54.29%), Postives = 45/70 (64.29%), Query Frame = -3
Query:  254 GEIPKSFANLKSLKFLRLTNNKLTGSIPRELTTLSALKVFDVSNNGLCGTIPVDGPFRSFPMESFENNKL 463
            G IP +   LK L+FLRL NN L+G IPR LT +  L+V D+SNN L G IPV+G F  F   SF N KL
Sbjct:  130 GPIPSTLGRLKKLRFLRLNNNSLSGEIPRSLTAVLTLQVLDLSNNPLTGDIPVNGSFSLFTPISFANTKL 199          
BLAST of CX076951 vs. ExPASy Swiss-Prot
Match: SERK1_ARATH (Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana GN=SERK1 PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.774e-13
Identity = 39/74 (52.70%), Postives = 48/74 (64.86%), Query Frame = -3
Query:  245 GEIPKSFANLKSLKFLRLTNNKLTGSIPRELTTLSALKVFDVSNNGLCGTIPVDGPFRSFPMESFENN-KLNGP 463
            G IP+S   L  L+FLRL NN LTGSIP  LT ++ L+V D+SNN L G++P +G F  F   SF NN  L GP
Sbjct:  131 GPIPESLGKLSKLRFLRLNNNSLTGSIPMSLTNITTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLCGP 204          
BLAST of CX076951 vs. ExPASy Swiss-Prot
Match: SERK5_ARATH (Somatic embryogenesis receptor kinase 5 OS=Arabidopsis thaliana GN=SERK5 PE=1 SV=2)

HSP 1 Score: 73.9442 bits (180), Expect = 3.623e-13
Identity = 40/70 (57.14%), Postives = 44/70 (62.86%), Query Frame = -3
Query:  254 GEIPKSFANLKSLKFLRLTNNKLTGSIPRELTTLSALKVFDVSNNGLCGTIPVDGPFRSFPMESFENNKL 463
            G IP S   L  L+FLRL NN L+G IPR LT L  L V D+SNN L G IPV+G F  F   SF NNKL
Sbjct:  132 GPIPSSLGKLGKLRFLRLYNNSLSGEIPRSLTAL-PLDVLDISNNRLSGDIPVNGSFSQFTSMSFANNKL 200          
BLAST of CX076951 vs. ExPASy Swiss-Prot
Match: SERK2_ARATH (Somatic embryogenesis receptor kinase 2 OS=Arabidopsis thaliana GN=SERK2 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 6.833e-12
Identity = 38/74 (51.35%), Postives = 45/74 (60.81%), Query Frame = -3
Query:  245 GEIPKSFANLKSLKFLRLTNNKLTGSIPRELTTLSALKVFDVSNNGLCGTIPVDGPFRSFPMESFENN-KLNGP 463
            G IP S   L  L+FLRL NN LTG IP  LT +  L+V D+SNN L G++P +G F  F   SF NN  L GP
Sbjct:  134 GPIPDSLGKLFKLRFLRLNNNSLTGPIPMSLTNIMTLQVLDLSNNRLSGSVPDNGSFSLFTPISFANNLDLCGP 207          
BLAST of CX076951 vs. ExPASy Swiss-Prot
Match: PSKR1_ARATH (Phytosulfokine receptor 1 OS=Arabidopsis thaliana GN=PSKR1 PE=2 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 8.924e-12
Identity = 36/72 (50.00%), Postives = 46/72 (63.89%), Query Frame = -3
Query:  248 GEIPKSFANLKSLKFLRLTNNKLTGSIPRELTTLSALKVFDVSNNGLCGTIPVDGPFRSFPMESFENNKLNG 463
            G IP S + + SL+ L L+NN+L+GSIP  L  LS L  F V+ N L G IP  G F++FP  SFE+N L G
Sbjct:  561 GSIPSSLSGMTSLEALDLSNNRLSGSIPVSLQQLSFLSKFSVAYNNLSGVIPSGGQFQTFPNSSFESNHLCG 632          
BLAST of CX076951 vs. ExPASy Swiss-Prot
Match: SERK4_ARATH (Somatic embryogenesis receptor kinase 4 OS=Arabidopsis thaliana GN=SERK4 PE=1 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 1.166e-11
Identity = 37/70 (52.86%), Postives = 44/70 (62.86%), Query Frame = -3
Query:  254 GEIPKSFANLKSLKFLRLTNNKLTGSIPRELTTLSALKVFDVSNNGLCGTIPVDGPFRSFPMESFENNKL 463
            G IP S   L  L+FLRL NN L+G IP  LT++  L+V D+SNN L G IPV+G F  F   SF NN L
Sbjct:  137 GPIPSSLGKLGKLRFLRLNNNSLSGEIPMTLTSVQ-LQVLDISNNRLSGDIPVNGSFSLFTPISFANNSL 205          
The following BLAST results are available for this feature:
BLAST of CX076951 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
BAK1_ARATH1.245e-1354.29BRASSINOSTEROID INSENSITIVE 1-associated receptor ... [more]
SERK1_ARATH2.774e-1352.70Somatic embryogenesis receptor kinase 1 OS=Arabido... [more]
SERK5_ARATH3.623e-1357.14Somatic embryogenesis receptor kinase 5 OS=Arabido... [more]
SERK2_ARATH6.833e-1251.35Somatic embryogenesis receptor kinase 2 OS=Arabido... [more]
PSKR1_ARATH8.924e-1250.00Phytosulfokine receptor 1 OS=Arabidopsis thaliana ... [more]
SERK4_ARATH1.166e-1152.86Somatic embryogenesis receptor kinase 4 OS=Arabido... [more]
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Properties
Property NameValue
Genbank descriptionUCRCS08_53C05_b Parent Washington Navel Orange Callus cDNA Library UCRCS08-2 Citrus sinensis cDNA clone UCRCS08-53C05-E9-1-4.b, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX076951 ID=CX076951; Name=CX076951; organism=Citrus sinensis; type=EST; length=465bp
TTTTTTTTTTTTTTTTTGTGGATTTTTAAATAAGCTTACATAATCTTATT
TTAATTGCTTTAGTTACTTCATACATGAACAGTCACTGCCGCTGACATAA
TATATCTAGCCATTCGATCAAGCTGATGCACACAATATAATTTTACCCTA
TACGAGTCTTTAACATTATGGTCTTCAATAGAAGACGGAGGGTTTTCAAC
CTTCTTCAGCATCCAAAATCATAAGGCACCAGTCCTTGCAGCTCTGGTCC
ATTGAGTTTATTATTTTCAAAACTCTCCATAGGAAAGCTTCTAAAAGGAC
CATCAACAGGGATTGTCCCACAGAGACCATTGTTAGAAACATCAAAAACT
TTGAGGGCCGACAGGGTGGTCAGCTCCCTCGGAATTGATCCTGTTAGTTT
GTTGTTGGTCAACCGCAAAAATTTAAGTGACTTCAAATTGGCAAAGGACT
TTGGTATTTCTCCTT
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