EY736100

Overview
NameEY736100
Unique NameEY736100
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length886
Libraries
Library NameType
Sweet orange fruit, development stadium (6 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY736100 vs. ExPASy Swiss-Prot
Match: RPAC1_DICDI (DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum GN=polr1c PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24
Identity = 54/107 (50.47%), Postives = 75/107 (70.09%), Query Frame = 2
Query:  134 PHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVHNSLQLDHFCNNFTVEVIRLTKDDMEFDLIGIDAAIANACRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 454
            P++E +RT+V        +     YSGAY S+G  NS  L+ F  NF + ++  + +++ F++IGIDA IANA RRI+I+E+PTMAIEKV I NNTS++QDEVLAHR
Sbjct:   13 PNLENKRTKVTLTNSGVENARGTYYSGAYTSVGYDNSFNLNRFKENFKINILSESANELVFEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHR 119          
BLAST of EY736100 vs. ExPASy Swiss-Prot
Match: RPAC1_BOVIN (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus GN=POLR1C PE=2 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 7.032e-22
Identity = 56/134 (41.79%), Postives = 82/134 (61.19%), Query Frame = 2
Query:  140 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVHNSLQLDHFCNNFTVEVIRLTKDDMEFDLIGIDAAIANACRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRXXXXXXXXXXXVVQYMSEGGSSPEGNTRV 541
            +E  RTRV        +     + G Y+  G  ++   D F  NF V+V+ + ++ +EFD++GIDAAIANA RRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHR           + +Y ++G    EG T +
Sbjct:    7 VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG---DEGGTEI 135          
BLAST of EY736100 vs. ExPASy Swiss-Prot
Match: RPAC1_HUMAN (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens GN=POLR1C PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 5.953e-21
Identity = 52/124 (41.94%), Postives = 78/124 (62.90%), Query Frame = 2
Query:  140 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVHNSLQLDHFCNNFTVEVIRLTKDDMEFDLIGIDAAIANACRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRXXXXXXXXXXXVVQYMSEG 511
            +E  R+RV        +     + G Y+  G  ++   D F  NF V+V+ + ++ +EFD++GIDAAIANA RRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHR           + +Y ++G
Sbjct:    7 VEEMRSRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG 128          
BLAST of EY736100 vs. ExPASy Swiss-Prot
Match: RPAC1_MOUSE (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus GN=Polr1e PE=1 SV=2)

HSP 1 Score: 100.908 bits (250), Expect = 1.015e-20
Identity = 53/124 (42.74%), Postives = 77/124 (62.10%), Query Frame = 2
Query:  140 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVHNSLQLDHFCNNFTVEVIRLTKDDMEFDLIGIDAAIANACRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRXXXXXXXXXXXVVQYMSEG 511
            +E  RTRV        +     + G YA  G  ++   + F  NF V V+++ +D +EFD++GIDAAIANA RRIL+A +PTMA+EKVL+ NNTS++QDE+LAHR           + +Y ++G
Sbjct:    7 VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVGVVQMDEDTLEFDMVGIDAAIANAFRRILLARVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEYRNQG 128          
BLAST of EY736100 vs. ExPASy Swiss-Prot
Match: RPAC1_SCHPO (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pombe GN=rpc40 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.530e-16
Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 2
Query:  140 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVHNSLQLDHFCNNFTVEVIRLTKDDMEFDLIGIDAAIANACRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 454
            ++  RT +    D      +V + G Y      N   LD F  N  V +  L ++ M F++ GIDA+IANA RRILIAE+PT+A E V I NNTS+IQDEVL+HR
Sbjct:    4 VDRSRTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 106          
BLAST of EY736100 vs. ExPASy Swiss-Prot
Match: RPAC1_YEAST (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Saccharomyces cerevisiae GN=RPC40 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.793e-13
Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 2
Query:  224 SMGVHNSLQLDHFCNNFTVEVIRLTKDDMEFDLIGIDAAIANACRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 454
            S    N   ++ F  +F V +  L   +  FDLI ID +IANA RRI+I+E+P++A E V   NNTSVIQDEVLAHR
Sbjct:   24 SKDAENEWNVEKFKKDFEVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHR 100          
The following BLAST results are available for this feature:
BLAST of EY736100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
RPAC1_DICDI5.752e-2450.47DNA-directed RNA polymerases I and III subunit rpa... [more]
RPAC1_BOVIN7.032e-2241.79DNA-directed RNA polymerases I and III subunit RPA... [more]
RPAC1_HUMAN5.953e-2141.94DNA-directed RNA polymerases I and III subunit RPA... [more]
RPAC1_MOUSE1.015e-2042.74DNA-directed RNA polymerases I and III subunit RPA... [more]
RPAC1_SCHPO7.530e-1645.71DNA-directed RNA polymerases I and III subunit RPA... [more]
RPAC1_YEAST7.793e-1350.65DNA-directed RNA polymerases I and III subunit RPA... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-705-012-A01-CT.F Sweet orange fruit, development stadium (6 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY736100 ID=EY736100; Name=EY736100; organism=Citrus sinensis; type=EST; length=886bp
CACGCCGTCGAAACAGCGTAATTTTGACAGAGGCCAAGCATTAGGAATGG
CTGAACGAGAAGAGACTGAAAAGAAGAAAGAAGGAGAGAGCTTTTCAATA
TGGGACTTACCAGATGTGCCTCAGAAGCTCCCACCACACATCGAGTTTCA
AAGAACTCGCGTTCAATGCAACCTTGATGCTCCTATTCATACAGAGAATG
TAATGTATTCTGGTGCTTATGCTTCAATGGGAGTCCATAATAGTTTACAG
TTGGATCATTTCTGCAACAATTTTACAGTTGAAGTGATTCGACTCACTAA
GGATGACATGGAATTTGATTTGATTGGTATTGATGCAGCAATTGCAAATG
CATGTCGAAGGATCCTCATAGCCGAGCTTCCTACGATGGCTATTGAAAAA
GTGCTTATCGCCAACAATACATCAGTGATCCAGGATGAGGTTCTTGCCCA
CAGGTTGGGTCTCATTCCGATTATTGGTGGTCCAGGGGTTGTTCAGTATA
TGTCAGAGGGGGGAAGTTCGCCGGAGGGCAATACGAGGGTGTCGAGGGGC
GGCTGTGCTTTGTTAGCGACGTGGGGCCCGGTGTGACGTGCAGACTCAGG
ATTGGTCTTGCGGACCGTTGTGGAGTCGCTCTGCCTGCGGCGCGGCAGCA
ACTGGCGGGTGGCTGGCGGCGAGGGGGGCGGGGGGCGGCTTTTGATGGCC
TGGGCGGGTCGTGCCGACCGCGGTGTTCTCCACCGCCGAGTAGAGACAAG
TTGCTGAAGTAAGTATTGGGAGTAAGGAGTACCGCTGTGAGTAAAAATGG
GAGGGGGGGTGGCGGGGGGGGCGGGGCTCCGCCGTACGGAACGGAGGGCG
GGGGCGGGAGCGGAGCGGGCGTATCAGGTCAGGCGC
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