EY736100
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY736100 vs. ExPASy Swiss-Prot
Match: RPAC1_DICDI (DNA-directed RNA polymerases I and III subunit rpac1 OS=Dictyostelium discoideum GN=polr1c PE=3 SV=1) HSP 1 Score: 111.694 bits (278), Expect = 5.752e-24 Identity = 54/107 (50.47%), Postives = 75/107 (70.09%), Query Frame = 2 Query: 134 PHIEFQRTRVQCNLDAPIHTENVMYSGAYASMGVHNSLQLDHFCNNFTVEVIRLTKDDMEFDLIGIDAAIANACRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 454 P++E +RT+V + YSGAY S+G NS L+ F NF + ++ + +++ F++IGIDA IANA RRI+I+E+PTMAIEKV I NNTS++QDEVLAHR Sbjct: 13 PNLENKRTKVTLTNSGVENARGTYYSGAYTSVGYDNSFNLNRFKENFKINILSESANELVFEMIGIDAPIANALRRIMISEIPTMAIEKVYIINNTSILQDEVLAHR 119
BLAST of EY736100 vs. ExPASy Swiss-Prot
Match: RPAC1_BOVIN (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Bos taurus GN=POLR1C PE=2 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 7.032e-22 Identity = 56/134 (41.79%), Postives = 82/134 (61.19%), Query Frame = 2 Query: 140 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVHNSLQLDHFCNNFTVEVIRLTKDDMEFDLIGIDAAIANACRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRXXXXXXXXXXXVVQYMSEGGSSPEGNTRV 541 +E RTRV + + G Y+ G ++ D F NF V+V+ + ++ +EFD++GIDAAIANA RRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHR + +Y ++G EG T + Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG---DEGGTEI 135
BLAST of EY736100 vs. ExPASy Swiss-Prot
Match: RPAC1_HUMAN (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Homo sapiens GN=POLR1C PE=1 SV=1) HSP 1 Score: 101.679 bits (252), Expect = 5.953e-21 Identity = 52/124 (41.94%), Postives = 78/124 (62.90%), Query Frame = 2 Query: 140 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVHNSLQLDHFCNNFTVEVIRLTKDDMEFDLIGIDAAIANACRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRXXXXXXXXXXXVVQYMSEG 511 +E R+RV + + G Y+ G ++ D F NF V+V+ + ++ +EFD++GIDAAIANA RRIL+AE+PTMA+EKVL+ NNTS++QDE+LAHR + +Y ++G Sbjct: 7 VEEMRSRVVLGEFGVRNVHTTDFPGNYS--GYDDAWDQDRFEKNFRVDVVHMDENSLEFDMVGIDAAIANAFRRILLAEVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPIHADPRLFEYRNQG 128
BLAST of EY736100 vs. ExPASy Swiss-Prot
Match: RPAC1_MOUSE (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Mus musculus GN=Polr1e PE=1 SV=2) HSP 1 Score: 100.908 bits (250), Expect = 1.015e-20 Identity = 53/124 (42.74%), Postives = 77/124 (62.10%), Query Frame = 2 Query: 140 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVHNSLQLDHFCNNFTVEVIRLTKDDMEFDLIGIDAAIANACRRILIAELPTMAIEKVLIANNTSVIQDEVLAHRXXXXXXXXXXXVVQYMSEG 511 +E RTRV + + G YA G ++ + F NF V V+++ +D +EFD++GIDAAIANA RRIL+A +PTMA+EKVL+ NNTS++QDE+LAHR + +Y ++G Sbjct: 7 VEEMRTRVVLGEFGVRNVHTTDFPGNYA--GYDDAWDQNRFEKNFRVGVVQMDEDTLEFDMVGIDAAIANAFRRILLARVPTMAVEKVLVYNNTSIVQDEILAHRLGLIPILADPRLFEYRNQG 128
BLAST of EY736100 vs. ExPASy Swiss-Prot
Match: RPAC1_SCHPO (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Schizosaccharomyces pombe GN=rpc40 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 7.530e-16 Identity = 48/105 (45.71%), Postives = 63/105 (60.00%), Query Frame = 2 Query: 140 IEFQRTRVQCNLDAPIHTENVMYSGAYASMGVHNSLQLDHFCNNFTVEVIRLTKDDMEFDLIGIDAAIANACRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 454 ++ RT + D +V + G Y N LD F N V + L ++ M F++ GIDA+IANA RRILIAE+PT+A E V I NNTS+IQDEVL+HR Sbjct: 4 VDRSRTEISVLSDRVTDVGSVDFPGYY--FDEDNIWDLDKFKKNLKVSITSLDQETMVFEISGIDASIANAFRRILIAEIPTLAFEFVYIINNTSIIQDEVLSHR 106
BLAST of EY736100 vs. ExPASy Swiss-Prot
Match: RPAC1_YEAST (DNA-directed RNA polymerases I and III subunit RPAC1 OS=Saccharomyces cerevisiae GN=RPC40 PE=1 SV=1) HSP 1 Score: 74.7146 bits (182), Expect = 7.793e-13 Identity = 39/77 (50.65%), Postives = 50/77 (64.94%), Query Frame = 2 Query: 224 SMGVHNSLQLDHFCNNFTVEVIRLTKDDMEFDLIGIDAAIANACRRILIAELPTMAIEKVLIANNTSVIQDEVLAHR 454 S N ++ F +F V + L + FDLI ID +IANA RRI+I+E+P++A E V NNTSVIQDEVLAHR Sbjct: 24 SKDAENEWNVEKFKKDFEVNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHR 100 The following BLAST results are available for this feature:
BLAST of EY736100 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 6
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY736100 ID=EY736100; Name=EY736100; organism=Citrus sinensis; type=EST; length=886bpback to top |