DR908573

Overview
NameDR908573
Unique NameDR908573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length614
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4510 contig Csv1_Contig4510:166..779. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR908573 vs. ExPASy Swiss-Prot
Match: BAHC1_HUMAN (BAH and coiled-coil domain-containing protein 1 OS=Homo sapiens GN=BAHCC1 PE=1 SV=3)

HSP 1 Score: 67.781 bits (164), Expect = 4.979e-11
Identity = 40/127 (31.50%), Postives = 62/127 (48.82%), Query Frame = 3 
Query:   72 KVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHSFKNYTKL-ENVGAED----YFCRFEYKAATGGF-TPDRVAVYC 434
            + +R GDC +   A     PY+ R+E +     +N+ V+V+W+Y PEE+  G+RQ  G   L+ S H D     TI  KC V + + Y ++  +   +D    Y+    Y   TG   T D V + C
Sbjct: 2482 ETLRVGDCAVFLSAGRPNLPYIGRIESMWESWGSNMVVKVKWFYHPEETKLGKRQCDGKNALYQSCHEDENDVQTISHKCQVVAREQYEQMARSRKCQDRQDLYYLAGTYDPTTGRLVTADGVPILC 2608
[Close]
BLAST of DR908573 vs. ExPASy Swiss-Prot
Match: BAHC1_MOUSE (BAH and coiled-coil domain-containing protein 1 OS=Mus musculus GN=Bahcc1 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 6.503e-11
Identity = 41/127 (32.28%), Postives = 61/127 (48.03%), Query Frame = 3 
Query:   72 KVVRPGDCVLMRPADSDKPPYVARVEKIEADHRNNVKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCTVHSFKNYTKL----ENVGAED-YFCRFEYKAATGGF-TPDRVAVYC 434
            + +R GDC +   A     PY+ R+E +     +N+ V+V+W+Y PEE+  G+RQ  G   L+ S H D     TI  KC V   + Y ++    +    +D Y+    Y   TG   T D V V C
Sbjct: 2517 ETLRIGDCAVFLSAGRPNLPYIGRIESLWESWGSNMVVKVKWFYHPEETKLGKRQSDGKNALYQSCHEDENDVQTISHKCQVVGREQYEQMMRGRKYQDQQDLYYLAGTYDPTTGRLVTADGVPVLC 2643
The following BLAST results are available for this feature:
BLAST of DR908573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BAHC1_HUMAN4.979e-1131.50BAH and coiled-coil domain-containing protein 1 OS... [more]
BAHC1_MOUSE6.503e-1132.28BAH and coiled-coil domain-containing protein 1 OS... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16701 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-13_C10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908573 ID=DR908573; Name=DR908573; organism=Citrus sinensis; type=EST; length=614bp
CAATCTTTCTCATGGCAAAAACCAAACCTGGGAAAAAAGACCTTGACTCG
TACAACATCAAAGGCACCAACAAAGTTGTCAGACCTGGTGATTGTGTGCT
AATGAGACCAGCGGACTCTGATAAGCCCCCGTACGTGGCGCGTGTGGAGA
AGATTGAGGCTGATCATCGGAACAACGTGAAAGTTCGTGTACGGTGGTAC
TATCGACCTGAGGAGTCAATCGGAGGGCGGAGACAGTTCCATGGAGCTAA
GGAGTTGTTTTTATCAGACCACTATGATGTGCAAAGTGCTCACACTATTG
AAGGGAAATGTACAGTACACTCTTTTAAGAACTACACTAAGCTTGAGAAT
GTTGGTGCCGAGGATTATTTTTGTAGGTTTGAATATAAAGCTGCCACTGG
AGGCTTCACTCCAGACCGCGTGGCTGTTTATTGCAAATGTGAGATGCCAT
ATAACCCAAACGACCTGATGGTGCAGTGTGAGGGATGCAAGGATTGGTTC
CATCCTTCTTGTATGGGTATGACCATAGAGGAGGCAAAAAAATTGGATCA
CTTTTTGTGTTCTGATTGTTCATCGGATGTTGATGCCAAAAGATCTTTGA
ATACATTCTCGGTT
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