DR908563

Overview
NameDR908563
Unique NameDR908563
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length616
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7560 contig Csv1_Contig7560:935..1549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908563 vs. ExPASy Swiss-Prot
Match: 2ABA_ORYSJ (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Oryza sativa subsp. japonica GN=Os06g0563300 PE=2 SV=2)

HSP 1 Score: 87.0409 bits (214), Expect = 7.931e-17
Identity = 40/59 (67.80%), Postives = 49/59 (83.05%), Query Frame = 3
Query:    3 PLGSLSGVVRRVK-GADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 176
            P  +L+ + R V+ G +N  +DANGN+FDFS KLLHLAWHP+ENSIACAA+NSLYMYYA
Sbjct:  464 PTRTLTSLARGVRRGGENQGVDANGNSFDFSTKLLHLAWHPTENSIACAAANSLYMYYA 522          
BLAST of DR908563 vs. ExPASy Swiss-Prot
Match: 2ABB_ARATH (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana GN=PP2AB2 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.936e-16
Identity = 38/57 (66.67%), Postives = 50/57 (87.72%), Query Frame = 3
Query:    6 LGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 176
            +GS++ VVRR  G+++   +ANGNA+DF+ KLLH+AWHP+ENSIACAA+NSLYMYYA
Sbjct:  447 IGSMTRVVRR--GSESPGTEANGNAYDFTTKLLHMAWHPTENSIACAAANSLYMYYA 501          
BLAST of DR908563 vs. ExPASy Swiss-Prot
Match: 2ABB_ORYSJ (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. japonica GN=Os02g0224200 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 6.714e-16
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 LGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 176
            L SL+  VRR  G +N  +DANGN++D S KLLHLAWHP+ENSIACAA+NSLYMYYA
Sbjct:  471 LTSLTRAVRR--GGENPGVDANGNSYDLSTKLLHLAWHPTENSIACAAANSLYMYYA 525          
BLAST of DR908563 vs. ExPASy Swiss-Prot
Match: 2ABB_ORYSI (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Oryza sativa subsp. indica GN=OsI_006296 PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 6.714e-16
Identity = 40/57 (70.18%), Postives = 47/57 (82.46%), Query Frame = 3
Query:    6 LGSLSGVVRRVKGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 176
            L SL+  VRR  G +N  +DANGN++D S KLLHLAWHP+ENSIACAA+NSLYMYYA
Sbjct:  471 LTSLTRAVRR--GGENPGVDANGNSYDLSTKLLHLAWHPTENSIACAAANSLYMYYA 525          
BLAST of DR908563 vs. ExPASy Swiss-Prot
Match: 2ABA_ARATH (Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform OS=Arabidopsis thaliana GN=PP2AB1 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 3.684e-14
Identity = 36/59 (61.02%), Postives = 47/59 (79.66%), Query Frame = 3
Query:    3 PLGSLSGVVRRV-KGADNSALDANGNAFDFSMKLLHLAWHPSENSIACAASNSLYMYYA 176
            P  +LS + R V +G+++  +D N NA D++ KLLHLAWHP+ENSIACAA+NSLYMYYA
Sbjct:  455 PSRALSSITRVVSRGSESPGVDGNTNALDYTTKLLHLAWHPNENSIACAAANSLYMYYA 513          
The following BLAST results are available for this feature:
BLAST of DR908563 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
2ABA_ORYSJ7.931e-1767.80Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABB_ARATH3.936e-1666.67Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABB_ORYSJ6.714e-1670.18Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABB_ORYSI6.714e-1670.18Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
2ABA_ARATH3.684e-1461.02Serine/threonine protein phosphatase 2A 55 kDa reg... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16691 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-19_G10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908563 ID=DR908563; Name=DR908563; organism=Citrus sinensis; type=EST; length=616bp
GACCTCTAGGAAGTCTTTCTGGTGTTGTGAGGCGAGTAAAAGGAGCAGAT
AACTCTGCACTTGATGCAAATGGAAATGCTTTTGATTTCTCCATGAAGTT
GTTGCACTTAGCTTGGCATCCATCAGAAAACTCAATTGCATGCGCTGCTT
CAAACAGCCTTTACATGTATTATGCATAAAGTTGGTCTGGGAAGATAATG
ACTTGTTCTATCTAGCCTGGCAAAGCTTTTGTGGTCGCTTTTGGTGAAAT
CTGCTTTGCTCTTCCAAAACCAATAATGGTGGAAGTCACGCTGCCGTCTA
TCAGACTTCTGGCAGTCCATTGTAATTTTTAGCATATCCTCCATCAACAC
CAAGGAAATTATCAAGAAAAAGCTTAAACTGATAATATTCCAAGAAGGCT
ATATACTCACTGATTTATTCTTTTGTAAGGACAGGTAGAATTATCCTTTT
TGTCTCTTGCTTAGGTCAAAGAAAAATGTGGTGGTAGCTAGCCTATGACG
GAGACAACCAGAGACAGAGCGTTATAAATACTTTGCTTCGGTGCTGCCGG
ATGGGGAGTTAACCTGAAACTTTGAGACGGAGCTTTCACGTTTGCATCAA
TTCTCATTGATATCTG
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