DR908559

Overview
NameDR908559
Unique NameDR908559
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6251 contig Csv1_Contig6251:115..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR908559 vs. ExPASy Swiss-Prot
Match: MYBJ_DICDI (Myb-like protein J OS=Dictyostelium discoideum GN=mybJ PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 48/137 (35.04%), Postives = 73/137 (53.28%), Query Frame = 2 
Query:  194 TDGSIRKSASMGNLSHYAGSTSGHNNNNASNTPDSPGETPDHHADGYASEDFVPGSSSSRERKKGVPWTEEEHRMFLLGLQKLGKGDWRGIARNYVVSRTPTQVASHAQKYFIRQSNVSRRKRRSSLFDIVADEPLD 604
            T   I  S    N ++ + S + +NNNN +N  ++   T         S      +      K+G  WT+EEH  FL G+Q  GKG W+ IA+ +V +RTPTQ+ SHAQKY++RQ   ++ KR  S+ D+   + +D
Sbjct:  314 TSTPITVSIINNNNNNNSNSNNNNNNNNNNNNNNTNNTTTTTTTATTTSGGKTNPTGKKTSLKQG--WTKEEHIRFLNGIQIHGKGAWKEIAQ-FVGTRTPTQIQSHAQKYYLRQKQETKNKR--SIHDLSLQDLID 445
The following BLAST results are available for this feature:
BLAST of DR908559 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
MYBJ_DICDI1.084e-1335.04Myb-like protein J OS=Dictyostelium discoideum GN=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16687 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-49_D02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908559 ID=DR908559; Name=DR908559; organism=Citrus sinensis; type=EST; length=617bp
GGACCCTCCAGATCCCAATCCGAATTGCCGTGTTGTACTAACTCTCACGG
CAGAGCGCAACCCCGAACCTAATCCAATCCGGTTCGCGGATTCCGAACAG
AAAATGACGCGGCGCTGCTCGCATTGCAGCCACAACGGCCACAACTCTCG
GACCTGCCCCAACCGCGGGGTCAAGATCTTCGGGGTCCGATTGACCGACG
GCTCAATCCGGAAGAGTGCTAGTATGGGCAATCTCAGCCACTACGCCGGT
TCGACTTCGGGTCATAATAACAATAACGCGTCAAACACTCCTGATTCGCC
CGGTGAGACGCCGGATCATCATGCTGACGGGTATGCGTCGGAAGATTTCG
TTCCCGGGTCATCGTCGAGTCGCGAACGCAAGAAAGGTGTTCCATGGACT
GAAGAGGAGCATAGGATGTTTTTACTTGGTTTGCAGAAGCTGGGGAAAGG
TGATTGGCGTGGAATTGCACGCAATTATGTTGTATCTAGAACACCTACTC
AAGTTGCCAGCCATGCTCAAAAATATTTTATCAGGCAAAGCAATGTGTCT
AGGAGAAAAAGACGGTCCAGCCTATTTGATATTGTTGCAGATGAACCACT
CGACACTCCAGCTGCAT
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