DR908557

Overview
NameDR908557
Unique NameDR908557
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length617
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13838 contig Csv1_Contig13838:62..676. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS11_EUPES (40S ribosomal protein S11 OS=Euphorbia esula GN=RPS11 PE=2 SV=1)

HSP 1 Score: 258.07 bits (658), Expect = 7.158e-73
Identity = 121/125 (96.80%), Postives = 124/125 (99.20%), Query Frame = 3
Query:  126 NRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFT 500
            NRFWKSIGLGFKTPREAI+GTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHF+KKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG KKAFT
Sbjct:   33 NRFWKSIGLGFKTPREAIDGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFT 157          

HSP 2 Score: 37.3502 bits (85), Expect = 7.158e-73
Identity = 17/18 (94.44%), Postives = 18/18 (100.00%), Query Frame = 2
Query:   29 MAEQTEKAFLKQPKVFLS 82
            MAEQTEKAFLKQPKVFL+
Sbjct:    1 MAEQTEKAFLKQPKVFLA 18          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS11_SOYBN (40S ribosomal protein S11 OS=Glycine max GN=RPS11 PE=2 SV=2)

HSP 1 Score: 255.758 bits (652), Expect = 1.588e-72
Identity = 122/126 (96.83%), Postives = 123/126 (97.62%), Query Frame = 3
Query:  126 NRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTG 503
            NRFWKSIGLGFKTPREAIEGTYIDKKCPFTG VSIRGRILAGTCHSAKMNRTIIVRRNYLHF+KKYQRYEKRHSNIPAHISP FRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSS GAKKAFTG
Sbjct:   33 NRFWKSIGLGFKTPREAIEGTYIDKKCPFTGNVSIRGRILAGTCHSAKMNRTIIVRRNYLHFIKKYQRYEKRHSNIPAHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTG 158          

HSP 2 Score: 38.5058 bits (88), Expect = 1.588e-72
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 2
Query:   29 MAEQTEKAFLKQPKVFLS 82
            MAEQTEKAFLKQPKVFLS
Sbjct:    1 MAEQTEKAFLKQPKVFLS 18          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS11_MAIZE (40S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=2 SV=1)

HSP 1 Score: 252.292 bits (643), Expect = 1.733e-71
Identity = 119/125 (95.20%), Postives = 122/125 (97.60%), Query Frame = 3
Query:  126 NRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFT 500
            NRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRI+AGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNV+KVIPAGS+   KKAFT
Sbjct:   33 NRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFT 157          

HSP 2 Score: 38.5058 bits (88), Expect = 1.733e-71
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 2
Query:   29 MAEQTEKAFLKQPKVFLS 82
            MAEQTEKAFLKQPKVFLS
Sbjct:    1 MAEQTEKAFLKQPKVFLS 18          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS113_ARATH (40S ribosomal protein S11-3 OS=Arabidopsis thaliana GN=RPS11C PE=2 SV=2)

HSP 1 Score: 246.514 bits (628), Expect = 9.305e-70
Identity = 116/126 (92.06%), Postives = 120/126 (95.24%), Query Frame = 3
Query:  126 NRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTG 503
            NRFWK+IGLGFKTPREAI+G YID KCPFTGTVSIRGRILAGTCHSAKM RTIIVRRNYLHFVKKYQRYEKRHSNIPAH+SPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAG+S   KKAFTG
Sbjct:   33 NRFWKNIGLGFKTPREAIDGAYIDSKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRNYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTG 158          

HSP 2 Score: 38.5058 bits (88), Expect = 9.305e-70
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 2
Query:   29 MAEQTEKAFLKQPKVFLS 82
            MAEQTEKAFLKQPKVFLS
Sbjct:    1 MAEQTEKAFLKQPKVFLS 18          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS111_ARATH (40S ribosomal protein S11-1 OS=Arabidopsis thaliana GN=RPS11A PE=2 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 7.782e-69
Identity = 115/127 (90.55%), Postives = 121/127 (95.28%), Query Frame = 3
Query:  126 NRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGG-AKKAFTG 503
            NRFWK+IGLGFKTPREAI+G Y+DKKCPFTGTVSIRGRILAGTCHSAKM RTIIVRR+YLHFVKKYQRYEKRHSNIPAH+SPCFRVKEGDH+IIGQCRPLSKTVRFNVLKVIPAGSS    KKAFTG
Sbjct:   33 NRFWKNIGLGFKTPREAIDGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRHSNIPAHVSPCFRVKEGDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTG 159          

HSP 2 Score: 38.5058 bits (88), Expect = 7.782e-69
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 2
Query:   29 MAEQTEKAFLKQPKVFLS 82
            MAEQTEKAFLKQPKVFLS
Sbjct:    1 MAEQTEKAFLKQPKVFLS 18          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS112_ARATH (40S ribosomal protein S11-2 OS=Arabidopsis thaliana GN=RPS11B PE=2 SV=2)

HSP 1 Score: 241.121 bits (614), Expect = 3.829e-68
Identity = 114/126 (90.48%), Postives = 120/126 (95.24%), Query Frame = 3
Query:  126 NRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTG 503
            NRFWK+IGLGFKTPREAIEGTYID+KCPFTGTVSIRGRIL+GTCHSAKM RTIIVRR+YLHFVKKY+RYEKRHSNIPAH+SPCFRVKEGD V IGQCRPLSKTVRFNVLKVIPAGSS   KKAFTG
Sbjct:   33 NRFWKNIGLGFKTPREAIEGTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRHSNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTG 158          

HSP 2 Score: 38.5058 bits (88), Expect = 3.829e-68
Identity = 18/18 (100.00%), Postives = 18/18 (100.00%), Query Frame = 2
Query:   29 MAEQTEKAFLKQPKVFLS 82
            MAEQTEKAFLKQPKVFLS
Sbjct:    1 MAEQTEKAFLKQPKVFLS 18          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS11_DUNTE (40S ribosomal protein S11 OS=Dunaliella tertiolecta GN=RPS11 PE=2 SV=1)

HSP 1 Score: 197.978 bits (502), Expect = 4.322e-51
Identity = 93/127 (73.23%), Postives = 113/127 (88.98%), Query Frame = 3
Query:  126 NRFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP-AGSSGGAKKAFTG 503
            +RF+K++GL FKTP+EAI+G Y+DKKCPFTG VSIRGRIL G   S+KM RTIIVRR+YLHF+ KY RYEKRH+NIPAH+SPCFRV++GD VIIGQCRPLSKT+RFNVL+VIP AG++G  KK+F+G
Sbjct:   32 HRFFKNVGLNFKTPKEAIDGNYVDKKCPFTGNVSIRGRILTGVVKSSKMMRTIIVRRDYLHFIPKYARYEKRHTNIPAHVSPCFRVRDGDTVIIGQCRPLSKTIRFNVLRVIPQAGATG--KKSFSG 156          

HSP 2 Score: 24.6386 bits (52), Expect = 4.322e-51
Identity = 11/12 (91.67%), Postives = 11/12 (91.67%), Query Frame = 2
Query:   29 MAEQTEKAFLKQ 64
            MAEQTEKAF KQ
Sbjct:    1 MAEQTEKAFQKQ 12          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS11_DICDI (40S ribosomal protein S11 OS=Dictyostelium discoideum GN=rps11 PE=3 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.073e-45
Identity = 86/123 (69.92%), Postives = 102/123 (82.93%), Query Frame = 3
Query:  129 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 497
            R++K+IGLG++TP++AIEGTYIDKKCPFT  VSIRG IL GT  S KM RT++VRRNYLH++KKY R+EKRHSNIPAH+SP F VKEGD V IGQCRPLSKTVRFNV+K   + +S    KAF
Sbjct:   33 RYYKNIGLGYRTPKDAIEGTYIDKKCPFTSDVSIRGAILRGTVISTKMRRTLVVRRNYLHYIKKYNRFEKRHSNIPAHVSPAFNVKEGDSVTIGQCRPLSKTVRFNVIKHDISAASKKQFKAF 155          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS11_XENLA (40S ribosomal protein S11 OS=Xenopus laevis GN=rps11 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 3.465e-44
Identity = 83/124 (66.94%), Postives = 101/124 (81.45%), Query Frame = 3
Query:  129 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 497
            R+++S+GLGFKTPREAI+GTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:   35 RYYRSVGLGFKTPREAIDGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQVGDTVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          

HSP 2 Score: 22.7126 bits (47), Expect = 3.465e-44
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 2
Query:   38 QTEKAFLKQPKVF 76
            QTE+A+ KQP +F
Sbjct:    5 QTERAYQKQPTIF 17          
BLAST of DR908557 vs. ExPASy Swiss-Prot
Match: RS11_RAT (40S ribosomal protein S11 OS=Rattus norvegicus GN=Rps11 PE=1 SV=3)

HSP 1 Score: 176.407 bits (446), Expect = 4.516e-44
Identity = 84/124 (67.74%), Postives = 101/124 (81.45%), Query Frame = 3
Query:  129 RFWKSIGLGFKTPREAIEGTYIDKKCPFTGTVSIRGRILAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRHSNIPAHISPCFR-VKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAF 497
            R++K+IGLGFKTP+EAIEGTYIDKKCPFTG VSIRGRIL+G     KM RTI++RR+YLH+++KY R+EKRH N+  H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV  A    G KK F
Sbjct:   35 RYYKNIGLGFKTPKEAIEGTYIDKKCPFTGNVSIRGRILSGVVTKMKMQRTIVIRRDYLHYIRKYNRFEKRHKNMSVHLSPCFRDVQIGDIVTVGECRPLSKTVRFNVLKVTKA---AGTKKQF 155          

HSP 2 Score: 22.7126 bits (47), Expect = 4.516e-44
Identity = 8/13 (61.54%), Postives = 11/13 (84.62%), Query Frame = 2
Query:   38 QTEKAFLKQPKVF 76
            QTE+A+ KQP +F
Sbjct:    5 QTERAYQKQPTIF 17          
The following BLAST results are available for this feature:
BLAST of DR908557 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 56
Match NameE-valueIdentityDescription
RS11_EUPES7.158e-7396.8040S ribosomal protein S11 OS=Euphorbia esula GN=RP... [more]
RS11_SOYBN1.588e-7296.8340S ribosomal protein S11 OS=Glycine max GN=RPS11 ... [more]
RS11_MAIZE1.733e-7195.2040S ribosomal protein S11 OS=Zea mays GN=RPS11 PE=... [more]
RS113_ARATH9.305e-7092.0640S ribosomal protein S11-3 OS=Arabidopsis thalian... [more]
RS111_ARATH7.782e-6990.5540S ribosomal protein S11-1 OS=Arabidopsis thalian... [more]
RS112_ARATH3.829e-6890.4840S ribosomal protein S11-2 OS=Arabidopsis thalian... [more]
RS11_DUNTE4.322e-5173.2340S ribosomal protein S11 OS=Dunaliella tertiolect... [more]
RS11_DICDI1.073e-4569.9240S ribosomal protein S11 OS=Dictyostelium discoid... [more]
RS11_XENLA3.465e-4466.9440S ribosomal protein S11 OS=Xenopus laevis GN=rps... [more]
RS11_RAT4.516e-4467.7440S ribosomal protein S11 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16685 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-24_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908557 ID=DR908557; Name=DR908557; organism=Citrus sinensis; type=EST; length=617bp
CTCAACAACTCAGCCCCGAAATCCAGCCATGGCGGAGCAGACCGAGAAGG
CGTTTTTGAAGCAGCCCAAGGTGTTTCTCAGCCTCGAAGAAGGCAGGAAA
AGGAAAGAGGCCAGGAAAGGGAGGGAATCGATTCTGGAAGAGCATAGGCT
TGGGATTCAAGACTCCCAGAGAGGCAATTGAAGGGACTTACATCGATAAG
AAGTGTCCGTTCACCGGCACTGTTTCCATCAGGGGTCGTATCCTTGCTGG
TACTTGCCACAGTGCTAAGATGAACAGAACCATCATCGTTAGGCGTAACT
ACCTTCACTTTGTGAAGAAATATCAGAGGTATGAGAAGAGGCACTCTAAC
ATTCCAGCACACATCTCACCTTGTTTCCGTGTGAAAGAGGGAGACCATGT
TATCATTGGCCAGTGCAGGCCTTTGTCAAAGACGGTCAGGTTTAATGTCT
TGAAAGTGATACCTGCTGGGTCTTCTGGTGGTGCAAAGAAGGCATTCACG
GGCGATGTGAGTTGGAGTCCGCTGTTTCCAACATTAAATTTTTGCTACTT
TTGTTCCATGGGACTTTGTTATTTGGATTTTTGCATTGGGAATTAAATCC
TTTTATGTCCTAATATA
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