DR908552

Overview
NameDR908552
Unique NameDR908552
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908552_ssr534 microsatellite DR908552_ssr534:534..555. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig1432 contig Csv1_Contig1432:8..625. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CML29_ORYSJ (Probable calcium-binding protein CML29 OS=Oryza sativa subsp. japonica GN=CML29 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.034e-28
Identity = 69/153 (45.10%), Postives = 101/153 (66.01%), Query Frame = 3
Query:   27 ESRPLSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLE-MNTKDMELGSLGNLLKAAFESLN--LDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDFQLI 476
            +++ LS + E L+++ SLVE F+AFDSDNDG +T  EL G+  S+G    E +VR+M+ + D + DG LS+EE L+ MN   + LG+LG LL++A  +L      D +L   EL  ++  +G   S+ DC EIIA MDGDGDGA+S E+F+L+
Sbjct:   15 QAQQLSVDFEALSYISSLVEAFQAFDSDNDGLVTAPELRGLLASLGLDKPEHEVRDMLARADADRDGKLSVEELLDVMNAGQLGLGALGALLQSAVPALESAAGPDGVLGADELARLLSVMGTA-SVEDCMEIIACMDGDGDGAISVEEFRLM 166          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CML25_ARATH (Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.327e-24
Identity = 53/152 (34.87%), Postives = 91/152 (59.87%), Query Frame = 3
Query:   24 AESRPLSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDFQLIV 479
            A+S  L +       +  L   F+ FD + DG I+  EL  I  S+G+   EE++ + + + D   DG ++ EEF+E+NTK M+   +   LK AF   ++DG+  ++  ELHEV+ +LG   S+A+C+++I  +D DGDG + FE+F++++
Sbjct:   20 ADSPYLQKARSGKTEIRELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFVELNTKGMDQNDVLENLKDAFSVYDIDGNGSISAEELHEVLRSLGDECSIAECRKMIGGVDKDGDGTIDFEEFKIMM 171          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CML15_ORYSJ (Probable calcium-binding protein CML15 OS=Oryza sativa subsp. japonica GN=CML15 PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.561e-20
Identity = 52/153 (33.99%), Postives = 92/153 (60.13%), Query Frame = 3
Query:   24 AESRPLSEETETLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDM-ELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDFQLIV 479
            A+ RP + E ET          FR FD++ DG I+ AEL+ +F SVG+  ++++V  MM++ D++ DG +SL EF  ++     +  +    L+ AF   + DG+ ++T AEL  V+  +G   ++A C+ +I  +D +GDG ++FE+F+L++
Sbjct:   45 AKPRPPAAEDET-------ERVFRKFDANGDGRISRAELAALFRSVGHAVTDDEVARMMQEADSDGDGYISLGEFAAISAPPPGDAAAAEEDLRHAFGVFDADGNGVITPAELARVLRGIGEAATVAQCRRMIDGVDRNGDGLINFEEFKLMM 190          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CML10_ORYSJ (Probable calcium-binding protein CML10 OS=Oryza sativa subsp. japonica GN=CML10 PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.747e-20
Identity = 45/131 (34.35%), Postives = 83/131 (63.36%), Query Frame = 3
Query:   90 FRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMN-TKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDFQLIV 479
            FR FD++ DG I+ +EL  +F S+G+ A+++++  MM + D + DG +SL+EF  +N T   +  ++   L+ AF   + DG+  ++ AEL  V+  LG   ++  C+ +I  +D +GDG +SFE+F++++
Sbjct:   45 FRKFDANGDGRISRSELGALFESLGHAATDDELARMMAEADADGDGFISLDEFAALNATASGDAAAVEEDLRHAFRVFDADGNGTISAAELARVLHGLGEKATVQQCRRMIEGVDQNGDGLISFEEFKVMM 175          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: ALL8_OLEEU (Calcium-binding allergen Ole e 8 OS=Olea europaea PE=1 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 7.747e-20
Identity = 48/130 (36.92%), Postives = 80/130 (61.54%), Query Frame = 3
Query:   90 FRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEF---LEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDFQ 470
            F  FD++ DG I+G EL+G+  ++G   S+E++  +M + DT+ DG ++++EF   ++  T         N LK AFE  + D + +++  ELH+++  LG   +  DC E+I S+D DGDG VSFE+F+
Sbjct:   25 FNRFDANGDGKISGDELAGVLKALGSNTSKEEIGRIMEEIDTDKDGFINVQEFAAFVKAETDPYPSSGGENELKEAFELYDQDHNGLISSVELHKILTRLGERYAEHDCVEMIKSVDSDGDGYVSFEEFK 154          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: POLC2_JUNOX (Polcalcin Jun o 2 OS=Juniperus oxycedrus PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 5.021e-19
Identity = 49/137 (35.77%), Postives = 85/137 (62.04%), Query Frame = 3
Query:   69 VLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDFQLIV 479
            V  L E F+ FD++ DG I+G+EL+ I  S+G    E +V+ MM + D + DG +SL+EF+++N K    G+    LK AF+  + D +  ++ AEL   +E++G   ++ + + II ++D +GDG +S E+FQ ++
Sbjct:   24 VHELEEVFKKFDANGDGKISGSELADILRSLGSDVGEAEVKAMMEEADADGDGYVSLQEFVDLNNK----GASVKDLKNAFKVFDRDCNGSISAAELCHTLESVGEPCTIEESKNIIHNVDKNGDGLISVEEFQTMM 156          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CML4_ORYSJ (Calmodulin-like protein 4 OS=Oryza sativa subsp. japonica GN=CML4 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.119e-18
Identity = 45/141 (31.91%), Postives = 85/141 (60.28%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDFQLIV 479
            T   +++  E F  FD + DG IT  EL+ +  S+G   +++++ +MMR+ DT+ +G++  +EFL +  + M+ G     LK AFE L+ D +  ++  EL  V+ NLG  ++  + +++I   D DGDG V++++F +++
Sbjct:    5 TSEQMVAFQEAFLLFDKNGDGCITLEELAAVTRSLGLEPTDQELNDMMREVDTDGNGIIDFQEFLSLIARKMKDGDGDEELKEAFEVLDKDQNGFISPTELRTVMTNLGEKMTDEEVEQMIREADTDGDGQVNYDEFVIMM 145          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CML27_ARATH (Probable calcium-binding protein CML27 OS=Arabidopsis thaliana GN=CML27 PE=1 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.461e-18
Identity = 44/131 (33.59%), Postives = 78/131 (59.54%), Query Frame = 3
Query:   78 LVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDFQ 470
            L + F  FDS+ DG I+  EL G+F ++G   +E ++  ++ + DT+ DG ++L+EF  +         +    + AF+  + D + +++ +ELH+V+  LG+  S+ DC  +I  +D DGDG V+FE+FQ
Sbjct:   24 LKKVFDQFDSNGDGKISVLELGGVFKAMGTSYTETELNRVLEEVDTDRDGYINLDEFSTLCRSSSSAAEI----RDAFDLYDQDKNGLISASELHQVLNRLGMSCSVEDCTRMIGPVDADGDGNVNFEEFQ 150          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CML23_ARATH (Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.492e-18
Identity = 47/139 (33.81%), Postives = 82/139 (58.99%), Query Frame = 3
Query:   60 LNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNL--LKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDFQ 470
            L  +  + + F+ FD +NDG I+  EL  +  ++   AS+E+ + MM++ D + +G + L+EF+ +     +  +   +  LK AF+  +LD +  ++  ELH V++NLG   S+ DCQ +I  +D DGDG V FE+F+
Sbjct:   10 LGSMEDIKKVFQRFDKNNDGKISIDELKDVIGALSPNASQEETKAMMKEFDLDGNGFIDLDEFVALFQISDQSSNNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLGEKCSIQDCQRMINKVDSDGDGCVDFEEFK 148          
BLAST of DR908552 vs. ExPASy Swiss-Prot
Match: CALM_RENRE (Calmodulin OS=Renilla reniformis PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 2.492e-18
Identity = 47/137 (34.31%), Postives = 74/137 (54.01%), Query Frame = 3
Query:   57 TLNHVLSLVETFRAFDSDNDGSITGAELSGIFNSVGYRASEEDVREMMRQGDTNNDGLLSLEEFLEMNTKDMELGSLGNLLKAAFESLNLDGDDILTGAELHEVIENLGVGLSLADCQEIIASMDGDGDGAVSFEDF 467
            T   +    E F  FD D DG+IT  EL  +  S+G   +E ++++M+ + D + DG +   EFL M  + M+       ++ AF   + DGD  ++ AEL  V+ NLG  L+  +  E+I   D DGDG V++E+F
Sbjct:    6 TEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGDGFISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEF 142          
The following BLAST results are available for this feature:
BLAST of DR908552 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
CML29_ORYSJ2.034e-2845.10Probable calcium-binding protein CML29 OS=Oryza sa... [more]
CML25_ARATH2.327e-2434.87Probable calcium-binding protein CML25 OS=Arabidop... [more]
CML15_ORYSJ1.561e-2033.99Probable calcium-binding protein CML15 OS=Oryza sa... [more]
CML10_ORYSJ7.747e-2034.35Probable calcium-binding protein CML10 OS=Oryza sa... [more]
ALL8_OLEEU7.747e-2036.92Calcium-binding allergen Ole e 8 OS=Olea europaea ... [more]
POLC2_JUNOX5.021e-1935.77Polcalcin Jun o 2 OS=Juniperus oxycedrus PE=1 SV=2[more]
CML4_ORYSJ1.119e-1831.91Calmodulin-like protein 4 OS=Oryza sativa subsp. j... [more]
CML27_ARATH1.461e-1833.59Probable calcium-binding protein CML27 OS=Arabidop... [more]
CML23_ARATH2.492e-1833.81Probable calcium-binding protein CML23 OS=Arabidop... [more]
CALM_RENRE2.492e-1834.31Calmodulin OS=Renilla reniformis PE=1 SV=2[more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16680 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-17_H04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908552 ID=DR908552; Name=DR908552; organism=Citrus sinensis; type=EST; length=618bp
GTAATTGCAGAAGTTGATCCATGGCTGAATCCAGGCCTCTCTCCGAGGAA
ACCGAGACATTGAACCATGTCTTAAGTCTAGTGGAGACTTTCAGAGCCTT
TGATTCGGACAACGATGGGTCGATCACTGGTGCTGAGCTCTCTGGAATAT
TCAATTCAGTTGGTTACAGGGCTAGCGAGGAAGATGTCAGGGAAATGATG
CGGCAAGGTGACACGAACAACGACGGATTGCTGAGCTTGGAGGAGTTCTT
GGAGATGAACACCAAAGACATGGAGCTTGGAAGCCTTGGGAATTTGCTCA
AGGCAGCTTTTGAATCTCTGAATCTTGATGGTGATGATATCTTAACTGGA
GCAGAGCTGCATGAAGTTATTGAAAATTTAGGAGTTGGGTTGTCATTAGC
TGATTGCCAGGAGATTATTGCTTCCATGGATGGAGACGGTGATGGTGCTG
TTAGCTTTGAGGACTTCCAATTAATAGTTAATTCCCTCCTCTAGAATCTC
AACAGTCAACACAACGTATGTAATGCTACATGTTATATATATATATATAT
ATATAGGAATAAACAATCACTAGCGTGTAGATCTATTACCATGCATCCTC
CATTACTCTGCCGGCTCT
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