DR908542

Overview
NameDR908542
Unique NameDR908542
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length619
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11438 contig Csv1_Contig11438:115..733. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908542 vs. ExPASy Swiss-Prot
Match: UEV1D_ARATH (Ubiquitin-conjugating enzyme E2 variant 1D OS=Arabidopsis thaliana GN=UEV1D PE=1 SV=1)

HSP 1 Score: 279.256 bits (713), Expect = 1.112e-74
Identity = 130/146 (89.04%), Postives = 134/146 (91.78%), Query Frame = 1
Query:   43 MTLGSGGSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 480
            MTLGSGGSSVVVPRNFR      RGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPP+VRFHSR+NM CVNHETGVV+PKKFGLL NWQREYTMEDIL QLKKEM+  HNRKLVQPPEGT F
Sbjct:    1 MTLGSGGSSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRVNMACVNHETGVVDPKKFGLLANWQREYTMEDILVQLKKEMSTSHNRKLVQPPEGTCF 146          
BLAST of DR908542 vs. ExPASy Swiss-Prot
Match: UEV1C_ARATH (Ubiquitin-conjugating enzyme E2 variant 1C OS=Arabidopsis thaliana GN=UEV1C PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 2.740e-73
Identity = 130/146 (89.04%), Postives = 136/146 (93.15%), Query Frame = 1
Query:   43 MTLGSGGSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 480
            MTLGSG SSVVVPRNFR      RGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPP+VRFHSRINMTCVNH+TGVV+ KKFG+L NWQR+YTMEDILTQLKKEMAA HNRKLVQPPEGT+F
Sbjct:    1 MTLGSG-SSVVVPRNFRLLEELERGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPTVRFHSRINMTCVNHDTGVVDSKKFGVLANWQRQYTMEDILTQLKKEMAASHNRKLVQPPEGTFF 145          
BLAST of DR908542 vs. ExPASy Swiss-Prot
Match: UEV1A_ARATH (Ubiquitin-conjugating enzyme E2 variant 1A OS=Arabidopsis thaliana GN=UEV1A PE=1 SV=1)

HSP 1 Score: 218.394 bits (555), Expect = 2.330e-56
Identity = 101/141 (71.63%), Postives = 114/141 (80.85%), Query Frame = 1
Query:   49 LGSGGSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 471
            + S  + VVVPRNFR      RGEKGIGDGTVSYGMDD DDIYM+SWTGTI+GP NT +EG+I+QLKLFC K+YPE PP+VRF +RINM CVN ETGVVEP  F +L NW+REYTMEDIL +LKKEM   HNRKL QPPEG
Sbjct:    1 MSSEEAKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDIYMQSWTGTILGPPNTAYEGKIFQLKLFCGKEYPESPPTVRFQTRINMACVNPETGVVEPSLFPMLTNWRREYTMEDILVKLKKEMMTSHNRKLAQPPEG 141          
BLAST of DR908542 vs. ExPASy Swiss-Prot
Match: UEV1B_ARATH (Ubiquitin-conjugating enzyme E2 variant 1B OS=Arabidopsis thaliana GN=UEV1B PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.279e-54
Identity = 99/141 (70.21%), Postives = 112/141 (79.43%), Query Frame = 1
Query:   49 LGSGGSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 471
            +GS    VVVPRNFR      RGEKGIGDGTVSYGMDD DDI M+SWTGTI+GPHNT +EG+I+QLKLFC KDYPE PP+VRF SRINM CVN E GVV+P  F +L NW+RE+TMED+L QLKKEM +  NRKL QP EG
Sbjct:    1 MGSEEEKVVVPRNFRLLEELERGEKGIGDGTVSYGMDDADDILMQSWTGTILGPHNTAYEGKIFQLKLFCGKDYPESPPTVRFQSRINMACVNPENGVVDPSHFPMLSNWRREFTMEDLLIQLKKEMMSSQNRKLAQPLEG 141          
BLAST of DR908542 vs. ExPASy Swiss-Prot
Match: UBE2V_DICDI (Probable ubiquitin-conjugating enzyme E2 variant OS=Dictyostelium discoideum GN=ube2v PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 5.216e-40
Identity = 72/135 (53.33%), Postives = 97/135 (71.85%), Query Frame = 1
Query:   76 VPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 480
            +PRNF        GEK  GDGT+SYG++  DDI + SW GTIIGP NT  + R Y LKL+CDKDYP KPP+VRF ++IN+ CVN + GVV+PK   +L NW  +  +++IL++L++EM++  N+KLVQPPEG  F
Sbjct:    4 IPRNFVLLEELESGEKSTGDGTISYGLESPDDILLSSWIGTIIGPQNTPFDNRFYSLKLYCDKDYPNKPPTVRFTTKINIGCVNQQNGVVDPKNLPILSNWTSKNRIQNILSELRREMSSSSNKKLVQPPEGANF 138          
BLAST of DR908542 vs. ExPASy Swiss-Prot
Match: MMS2_SCHPO (Ubiquitin-conjugating enzyme spm2 OS=Schizosaccharomyces pombe GN=spm2 PE=1 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.855e-37
Identity = 72/135 (53.33%), Postives = 94/135 (69.63%), Query Frame = 1
Query:   76 VPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEGTYF 480
            VPRNF+      +GEKG+G+ + SYG+ + DDI +  W  TI+GP ++VHE RIY LK+ CD +YP+ PP V F SRIN+  V+ ETG V P K   L +W+REY+ME +L  LKKEMA+  NRKL QPPEG+ F
Sbjct:    4 VPRNFKLLEELEKGEKGLGESSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIHCDANYPDAPPIVTFVSRINLPGVDGETGKVNPHKIDCLRHWKREYSMETVLLDLKKEMASSSNRKLPQPPEGSTF 138          
BLAST of DR908542 vs. ExPASy Swiss-Prot
Match: UB2V1_HUMAN (Ubiquitin-conjugating enzyme E2 variant 1 OS=Homo sapiens GN=UBE2V1 PE=1 SV=2)

HSP 1 Score: 150.214 bits (378), Expect = 7.794e-36
Identity = 68/137 (49.64%), Postives = 92/137 (67.15%), Query Frame = 1
Query:   61 GSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 471
            GS V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN   GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:    6 GSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 142          
BLAST of DR908542 vs. ExPASy Swiss-Prot
Match: UB2V1_BOVIN (Ubiquitin-conjugating enzyme E2 variant 1 OS=Bos taurus GN=UBE2V1 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 7.794e-36
Identity = 68/137 (49.64%), Postives = 92/137 (67.15%), Query Frame = 1
Query:   61 GSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 471
            GS V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PP VRF ++INM  VN   GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:    6 GSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 142          
BLAST of DR908542 vs. ExPASy Swiss-Prot
Match: UB2V1_MOUSE (Ubiquitin-conjugating enzyme E2 variant 1 OS=Mus musculus GN=Ube2v1 PE=1 SV=1)

HSP 1 Score: 149.443 bits (376), Expect = 1.329e-35
Identity = 68/137 (49.64%), Postives = 94/137 (68.61%), Query Frame = 1
Query:   61 GSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 471
            GS V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E RIY LK+ C   YPE PPSVRF +R+NM+ V+   GVV+P+   +L  WQ  ++++ IL +L++ M +  N KL QPPEG
Sbjct:    6 GSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKYPEAPPSVRFVTRVNMSGVSSSNGVVDPRATAVLAKWQNSHSIKVILQELRRLMMSKENMKLPQPPEG 142          
BLAST of DR908542 vs. ExPASy Swiss-Prot
Match: UB2V1_PONAB (Ubiquitin-conjugating enzyme E2 variant 1 OS=Pongo abelii GN=UBE2V1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 8.617e-35
Identity = 67/137 (48.91%), Postives = 91/137 (66.42%), Query Frame = 1
Query:   61 GSSVVVPRNFRXXXXXXRGEKGIGDGTVSYGMDDGDDIYMRSWTGTIIGPHNTVHEGRIYQLKLFCDKDYPEKPPSVRFHSRINMTCVNHETGVVEPKKFGLLVNWQREYTMEDILTQLKKEMAAPHNRKLVQPPEG 471
            GS V VPRNFR       G+KG+GDGTVS+G++D +D+ +  WTG IIGP  T++E RIY LK+ C    PE PP VRF ++INM  VN   GVV+P+   +L  WQ  Y+++ +L +L++ M +  N KL QPPEG
Sbjct:    6 GSGVKVPRNFRLLEELEEGQKGVGDGTVSWGLEDDEDMTLTRWTGMIIGPPRTIYENRIYSLKIECGPKCPEAPPFVRFVTKINMNGVNSSNGVVDPRAISVLAKWQNSYSIKVVLQELRRLMMSKENMKLPQPPEG 142          
The following BLAST results are available for this feature:
BLAST of DR908542 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 20
Match NameE-valueIdentityDescription
UEV1D_ARATH1.112e-7489.04Ubiquitin-conjugating enzyme E2 variant 1D OS=Arab... [more]
UEV1C_ARATH2.740e-7389.04Ubiquitin-conjugating enzyme E2 variant 1C OS=Arab... [more]
UEV1A_ARATH2.330e-5671.63Ubiquitin-conjugating enzyme E2 variant 1A OS=Arab... [more]
UEV1B_ARATH1.279e-5470.21Ubiquitin-conjugating enzyme E2 variant 1B OS=Arab... [more]
UBE2V_DICDI5.216e-4053.33Probable ubiquitin-conjugating enzyme E2 variant O... [more]
MMS2_SCHPO1.855e-3753.33Ubiquitin-conjugating enzyme spm2 OS=Schizosacchar... [more]
UB2V1_HUMAN7.794e-3649.64Ubiquitin-conjugating enzyme E2 variant 1 OS=Homo ... [more]
UB2V1_BOVIN7.794e-3649.64Ubiquitin-conjugating enzyme E2 variant 1 OS=Bos t... [more]
UB2V1_MOUSE1.329e-3549.64Ubiquitin-conjugating enzyme E2 variant 1 OS=Mus m... [more]
UB2V1_PONAB8.617e-3548.91Ubiquitin-conjugating enzyme E2 variant 1 OS=Pongo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16670 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-12_B01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908542 ID=DR908542; Name=DR908542; organism=Citrus sinensis; type=EST; length=619bp
TCTCTCTTAGATCTCAGCTTACCCATCATCAAAATCGCAACCATGACGCT
AGGCTCAGGAGGATCCAGTGTCGTGGTCCCTCGGAACTTCAGATTGTTGG
AGGAACTTGAACGCGGAGAAAAGGGTATTGGAGATGGCACTGTCAGCTAT
GGAATGGATGATGGAGATGACATTTACATGCGCTCTTGGACTGGCACCAT
TATCGGTCCTCACAATACTGTACATGAAGGTAGAATTTATCAGTTGAAGC
TGTTCTGTGATAAAGATTATCCAGAGAAGCCACCAAGTGTTCGTTTTCAT
TCACGAATCAACATGACTTGTGTTAACCATGAAACTGGAGTGGTGGAACC
TAAAAAGTTTGGACTTCTTGTGAATTGGCAGCGAGAGTACACCATGGAGG
ATATACTCACACAACTGAAAAAGGAGATGGCAGCCCCACACAATCGGAAG
CTGGTTCAACCTCCTGAGGGTACCTACTTCTAGCTTCTAAGATCATATAG
GTATCATGGGGCTTATTGCATATTACAATATGCAATATATAGATTGTATT
CCTGTGTTCATCCTGTTGATGTTAAGAACATAGAAGGAAATGCCTGAAAG
GGCCTTTTCCAATTACATC
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