DR908516

Overview
NameDR908516
Unique NameDR908516
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length610
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1340 contig Csv1_Contig1340:137..746. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: ECA4_ARATH (Calcium-transporting ATPase 4, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA4 PE=2 SV=2)

HSP 1 Score: 345.51 bits (885), Expect = 1.242e-94
Identity = 162/202 (80.20%), Postives = 185/202 (91.58%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGRCTSGWRYSRAHRPSTK 607
            LIT WILFRY+VIG YVGVATVG+F+IWYTH++F+GIDLS DGHSLV+Y+QLA+WG+C SWE F  SPFTAG+Q F+FD +PC+YFQ GK+KA+TLSLSVLVAIEMFNSLNALSED SL++MPPWVNPWLLLAM++SFGLHF+ILYVPF AQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKF+GRCTSG+RYS    PS K
Sbjct:  857 LITAWILFRYMVIGLYVGVATVGVFIIWYTHNSFMGIDLSQDGHSLVSYSQLAHWGQCSSWEGFKVSPFTAGSQTFSFDSNPCDYFQQGKIKASTLSLSVLVAIEMFNSLNALSEDGSLVTMPPWVNPWLLLAMAVSFGLHFVILYVPFLAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFVGRCTSGYRYS-PRTPSAK 1057          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: ECA1_ARATH (Calcium-transporting ATPase 1, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA1 PE=1 SV=2)

HSP 1 Score: 344.354 bits (882), Expect = 2.767e-94
Identity = 159/194 (81.96%), Postives = 181/194 (93.30%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGRCTSGWRYS 583
            LIT WILFRY+VIG YVGVATVG+F+IWYTH +F+GIDLS DGHSLV+Y+QLA+WG+C SWE F  SPFTAG+Q F+FD +PC+YFQ GK+KA+TLSLSVLVAIEMFNSLNALSED SL++MPPWVNPWLLLAM++SFGLHF+ILYVPF AQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKF+GRCTSG+RYS
Sbjct:  857 LITAWILFRYMVIGLYVGVATVGVFIIWYTHSSFMGIDLSQDGHSLVSYSQLAHWGQCSSWEGFKVSPFTAGSQTFSFDSNPCDYFQQGKIKASTLSLSVLVAIEMFNSLNALSEDGSLVTMPPWVNPWLLLAMAVSFGLHFVILYVPFLAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFVGRCTSGYRYS 1050          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: ECAP_SOLLC (Calcium-transporting ATPase, endoplasmic reticulum-type OS=Solanum lycopersicum GN=LCA1 PE=2 SV=1)

HSP 1 Score: 280.796 bits (717), Expect = 3.758e-75
Identity = 132/186 (70.97%), Postives = 154/186 (82.80%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGR 559
            LI  W+ FRY+VIG YVG+ATVGIF++WYT  +FLGI++  DGH+LV  +QL NWG C +W NFT SPF AGN++  F  DPCEYF  GKVKA TLSLSVLVAIEMFNSLNALSED+SL+ MPPW NPWLL+AMS+SF LH +ILYVPF A +FGIVPLSL EWLLV+ +S PVILIDEVLKF+GR
Sbjct:  854 LINSWVFFRYMVIGSYVGIATVGIFIVWYTQASFLGINIVSDGHTLVELSQLRNWGECSTWTNFTVSPFKAGNRLITFS-DPCEYFTVGKVKAMTLSLSVLVAIEMFNSLNALSEDNSLIKMPPWRNPWLLVAMSLSFALHSVILYVPFLADIFGIVPLSLYEWLLVILLSAPVILIDEVLKFVGR 1038          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: ECA2_ARATH (Calcium-transporting ATPase 2, endoplasmic reticulum-type OS=Arabidopsis thaliana GN=ECA2 PE=2 SV=1)

HSP 1 Score: 268.085 bits (684), Expect = 2.521e-71
Identity = 130/190 (68.42%), Postives = 151/190 (79.47%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSW-ENFTASPFTA--GNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGRC 562
            LI  W+L RYLVIG YVGVATVGIFV+WYT  +FLGI L  DGH+LV++ QL NW  C SW  NFTA+P+T   G +   F+ +PC+YF  GKVK  TLSL+VLVAIEMFNSLNALSED+SLL+MPPW NPWLL+AM++SF LH +ILYVPF A VFGIVPLS  EW +V+ VS PVILIDE LKFIGRC
Sbjct:  853 LIDSWVLIRYLVIGSYVGVATVGIFVLWYTQASFLGISLISDGHTLVSFTQLQNWSECSSWGTNFTATPYTVAGGLRTIAFENNPCDYFTLGKVKPMTLSLTVLVAIEMFNSLNALSEDNSLLTMPPWRNPWLLVAMTVSFALHCVILYVPFLANVFGIVPLSFREWFVVILVSFPVILIDEALKFIGRC 1042          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: ATC_PLAFK (Calcium-transporting ATPase OS=Plasmodium falciparum (isolate K1 / Thailand) GN=ATP6 PE=3 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 1.179e-44
Identity = 90/186 (48.39%), Postives = 124/186 (66.67%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGR 559
            LI    L RY++IG YVG+ATV IFV W+            D H+L+ + QL+++ +C +W NF        N+V++  +D C YF +GK+KA+TLSLSVLV IEMFN+LNALSE +SL  +PPW N +L+LA   S  LH LILY+P  A++FG+VPLS  +W LV   S PVI++DE++KF  +
Sbjct: 1040 LINGLTLLRYIIIGTYVGIATVSIFVYWFLFYP------DSDMHTLINFYQLSHYNQCKAWNNFRV------NKVYDMSEDHCSYFSAGKIKASTLSLSVLVLIEMFNALNALSEYNSLFEIPPWRNMYLVLATIGSLLLHVLILYIPPLARIFGVVPLSAYDWFLVFLWSFPVIILDEIIKFYAK 1213          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: AT2A3_HUMAN (Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Homo sapiens GN=ATP2A3 PE=1 SV=2)

HSP 1 Score: 149.828 bits (377), Expect = 1.000e-35
Identity = 85/186 (45.70%), Postives = 116/186 (62.37%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGR 559
            LI+ W+ FRYL IG YVG+ATV     W+ +D         +G  +  Y QL N+ +C        +P  AG          CE F+S     TT++LSVLV IEM N+LN++SE+ SLL MPPW+NPWLL+A+++S  LHFLIL VP    +F + PLS  +W++VL +SLPVIL+DE LK++ R
Sbjct:  828 LISGWLFFRYLAIGVYVGLATVAAATWWFVYDA--------EGPHINFY-QLRNFLKCSE-----DNPLFAGID--------CEVFESRF--PTTMALSVLVTIEMCNALNSVSENQSLLRMPPWMNPWLLVAVAMSMALHFLILLVPPLPLIFQVTPLSGRQWVVVLQISLPVILLDEALKYLSR 989          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: ATC1_DROPS (Calcium-transporting ATPase sarcoplasmic/endoplasmic reticulum type OS=Drosophila pseudoobscura pseudoobscura GN=Ca-P60A PE=3 SV=2)

HSP 1 Score: 147.902 bits (372), Expect = 3.802e-35
Identity = 83/186 (44.62%), Postives = 112/186 (60.22%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGR 559
            LI+ W+ FRY+ IGFYVG ATVG    W+          S +G  L TY QL +   C             G++    D   C+ F   K  A T++LSVLV IEM N++N+LSE+ SL+SMPPW N WL+ +M++SF LHF+ILYV   + VF + PLS  EW+ V+  S+PV+L+DE LKF+ R
Sbjct:  828 LISGWLFFRYMAIGFYVGAATVGAAAWWFI--------ASSEGPGL-TYWQLTHHLSC----------LGGGDEFKGVD---CKIFSDPK--AMTMALSVLVTIEMLNAMNSLSENQSLISMPPWCNLWLIGSMALSFTLHFVILYVDVLSTVFQVTPLSAEEWITVMKFSIPVVLLDETLKFVAR 989          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: AT2A3_RAT (Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Rattus norvegicus GN=Atp2a3 PE=1 SV=1)

HSP 1 Score: 147.517 bits (371), Expect = 4.965e-35
Identity = 86/186 (46.24%), Postives = 115/186 (61.83%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGR 559
            LI+ W+ FRYL IG YVG+ATV     W+ +D         +G   VT++QL N+ +C        +P  AG          CE F+S     TT++LSVLV IEM N+LN++SE+ SLL MPPW+NPWLL A+ +S  LHFLIL VP    +F + PLS  +W +VL +SLPVIL+DE LK++ R
Sbjct:  828 LISGWLFFRYLAIGVYVGLATVAAATWWFLYDA--------EGPQ-VTFHQLRNFLKCSE-----DNPLFAGID--------CEVFESRF--PTTMALSVLVTIEMCNALNSVSENQSLLRMPPWLNPWLLGAVVMSMALHFLILLVPPLPLIFQVTPLSGRQWGVVLQMSLPVILLDEALKYLSR 989          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: AT2A3_CHICK (Sarcoplasmic/endoplasmic reticulum calcium ATPase 3 OS=Gallus gallus GN=ATP2A3 PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 6.485e-35
Identity = 85/186 (45.70%), Postives = 116/186 (62.37%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGR 559
            LI+ W+ FRYL IG YVG+ATVG    W+ +D         +G   V+++QL N+ RC           T  N +F  +   CE F+S     TT++LSVLV IEM N+LN++SE+ SLL MPPW+N WLL A+ +S  LHF ILYV     +F + PLS  +W++VL +SLPVIL+DE LK++ R
Sbjct:  828 LISGWLFFRYLAIGVYVGLATVGAATWWFLYDA--------EGPQ-VSFHQLRNFMRC-----------TEDNPIF--EGVNCEIFESRY--PTTMALSVLVTIEMCNALNSVSENQSLLRMPPWLNIWLLGAIVMSMALHFFILYVKPMPLIFQVTPLSWPQWVVVLKISLPVILLDEGLKYLSR 989          
BLAST of DR908516 vs. ExPASy Swiss-Prot
Match: AT2A2_MOUSE (Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 OS=Mus musculus GN=Atp2a2 PE=1 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 6.485e-35
Identity = 87/203 (42.86%), Postives = 120/203 (59.11%), Query Frame = 2
Query:    2 LITPWILFRYLVIGFYVGVATVGIFVIWYTHDTFLGIDLSGDGHSLVTYNQLANWGRCHSWENFTASPFTAGNQVFNFDKDPCEYFQSGKVKATTLSLSVLVAIEMFNSLNALSEDSSLLSMPPWVNPWLLLAMSISFGLHFLILYVPFFAQVFGIVPLSLNEWLLVLAVSLPVILIDEVLKFIGRCTSGWRYSRAHRPSTKT 610
            LI+ W+ FRYL IG YVG ATVG    W+         ++ DG   V++ QL+++ +C        +P        +FD   C  F+S      T++LSVLV IEM N+LN+LSE+ SLL MPPW N WL+ ++ +S  LHFLILYV     +F I PL+L +WL+VL +SLPVIL+DE LKF+ R           +P+TK+
Sbjct:  827 LISGWLFFRYLAIGCYVGAATVGAAAWWF---------IAADGGPRVSFYQLSHFLQCKE-----DNP--------DFDGVDCAIFESPY--PMTMALSVLVTIEMCNALNSLSENQSLLRMPPWENIWLVGSICLSMSLHFLILYVEPLPLIFQITPLNLTQWLMVLKISLPVILMDETLKFVARNYLEQPGKECVQPATKS 1005          
The following BLAST results are available for this feature:
BLAST of DR908516 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
ECA4_ARATH1.242e-9480.20Calcium-transporting ATPase 4, endoplasmic reticul... [more]
ECA1_ARATH2.767e-9481.96Calcium-transporting ATPase 1, endoplasmic reticul... [more]
ECAP_SOLLC3.758e-7570.97Calcium-transporting ATPase, endoplasmic reticulum... [more]
ECA2_ARATH2.521e-7168.42Calcium-transporting ATPase 2, endoplasmic reticul... [more]
ATC_PLAFK1.179e-4448.39Calcium-transporting ATPase OS=Plasmodium falcipar... [more]
AT2A3_HUMAN1.000e-3545.70Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
ATC1_DROPS3.802e-3544.62Calcium-transporting ATPase sarcoplasmic/endoplasm... [more]
AT2A3_RAT4.965e-3546.24Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A3_CHICK6.485e-3545.70Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]
AT2A2_MOUSE6.485e-3542.86Sarcoplasmic/endoplasmic reticulum calcium ATPase ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16644 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_C01 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908516 ID=DR908516; Name=DR908516; organism=Citrus sinensis; type=EST; length=610bp
ATTGATCACTCCTTGGATTTTATTCCGCTATCTGGTGATTGGATTCTATG
TTGGGGTAGCTACGGTTGGTATATTTGTCATATGGTACACACATGACACA
TTCTTGGGCATTGATCTGAGTGGAGATGGCCACAGTCTCGTCACCTACAA
TCAACTTGCTAACTGGGGTCGCTGCCATTCTTGGGAGAATTTTACAGCGT
CACCCTTTACAGCTGGCAATCAAGTTTTTAATTTTGATAAAGATCCATGC
GAGTATTTCCAGTCTGGGAAAGTTAAGGCAACAACTCTCTCCCTCTCTGT
CTTGGTTGCCATTGAGATGTTCAATTCTCTGAATGCCCTCTCAGAGGACT
CGAGTTTGTTGTCAATGCCCCCATGGGTGAATCCATGGCTGCTTTTGGCC
ATGTCCATCTCATTCGGCCTGCACTTTTTGATCCTTTATGTACCTTTCTT
TGCTCAAGTATTTGGAATTGTTCCTCTCAGTCTGAATGAATGGCTCTTGG
TCTTGGCCGTTTCTTTACCAGTGATTCTAATAGACGAGGTACTCAAGTTC
ATTGGAAGATGTACAAGCGGGTGGCGGTATTCTAGGGCACATAGACCATC
AACAAAGACG
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