DR908511

Overview
NameDR908511
Unique NameDR908511
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length625
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3519 contig Csv1_Contig3519:8..632. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR908511 vs. ExPASy Swiss-Prot
Match: TO222_ARATH (Mitochondrial import receptor subunit TOM22 homolog 2 OS=Arabidopsis thaliana GN=TOM22-2 PE=1 SV=3)

HSP 1 Score: 105.145 bits (261), Expect = 2.906e-22
Identity = 54/81 (66.67%), Postives = 66/81 (81.48%), Query Frame = 3 
Query:  123 VTRRVSDTPIVAYTKQKASDAAYVSHKLLKSTGKAAWIAGTTFLILVVPLIIEMDREQQFNELEMQQQSLLGAPPLAPAQK 365
            +  R+S++ IV+  ++ A DA  VS KLL+STGKAAWIAGTTFLILVVPLIIEMDRE Q NE+E+QQ SLLGAPP +P Q+
Sbjct:   18 ILARISNSEIVSQGRRAAGDAVEVSKKLLRSTGKAAWIAGTTFLILVVPLIIEMDREAQINEIELQQASLLGAPP-SPMQR 97
[Close]
BLAST of DR908511 vs. ExPASy Swiss-Prot
Match: TO221_ARATH (Mitochondrial import receptor subunit TOM22 homolog 1 OS=Arabidopsis thaliana GN=TOM22-1 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.143e-18
Identity = 47/91 (51.65%), Postives = 65/91 (71.43%), Query Frame = 3 
Query:   78 KRLTNNSGEVGFLAKVTRRVSDTPIVAYTKQKASDAAYVSHKLLKSTGKAAWIAGTTFLILVVPLIIEMDREQQFNELEMQQQSLLGAPPL 350
            K++    G+   LAK+    S+  IV+  ++ A DA YVS KLLKSTGKAAWIAGTTFLIL VPLI+E++++ +  E++ +Q SLLG PP+
Sbjct:    4 KKIGAGKGDSSILAKI----SNYDIVSQGRRAACDAVYVSKKLLKSTGKAAWIAGTTFLILAVPLILELEQDHRLGEIDFEQASLLGTPPV 90
The following BLAST results are available for this feature:
BLAST of DR908511 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
TO222_ARATH2.906e-2266.67Mitochondrial import receptor subunit TOM22 homolo... [more]
TO221_ARATH1.143e-1851.65Mitochondrial import receptor subunit TOM22 homolo... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16639 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-45_H10 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908511 ID=DR908511; Name=DR908511; organism=Citrus sinensis; type=EST; length=625bp
TAAGCCCTTTCTCTCTCTTTCACATTGCTCCCTATTCCACCGTCTCCGCC
CATACGATGTCGTCCGGTCAAGGCAAAAAGCGACTTACCAACAACAGCGG
CGAGGTTGGCTTCTTGGCTAAGGTGACCCGTCGCGTATCGGATACTCCGA
TTGTCGCCTACACGAAACAGAAGGCGTCGGACGCGGCGTACGTCTCCCAT
AAGCTCCTCAAAAGCACGGGAAAAGCGGCGTGGATCGCGGGGACCACTTT
CCTCATCCTGGTGGTCCCGCTAATCATCGAGATGGACCGCGAGCAGCAGT
TCAACGAGCTCGAAATGCAGCAGCAGAGCCTCCTCGGCGCTCCCCCGCTC
GCGCCTGCTCAAAAGTGAATTCAACTTTAATCGGGCCGGCTCGGGTCAGG
TTTGAGGAGGTGTTGCGTTTTGCTAACGTGCTATCATTTTTATGTATTAG
GGTTTTGGAAATATTTTAAGAATGTTGGATAAATTTTGGATCTATGATAT
AAAAATGTCAACTTTCTTTTGTTTAGCGTGTATTATTATGTCAAACTTGT
TTGGTTTTGATTGCTTGTGGATTGCAGTAGTGTTAATTATTTATATTGTT
TAATTGCAGCGATTTTCGGGAGAAA
back to top