EY669643

Overview
NameEY669643
Unique NameEY669643
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length830
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY669643 vs. ExPASy Swiss-Prot
Match: FER2_ARATH (Ferredoxin-2, chloroplastic OS=Arabidopsis thaliana GN=FD2 PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 2.644e-52
Identity = 100/139 (71.94%), Postives = 119/139 (85.61%), Query Frame = 1
Query:   22 SMVSTSFIRSKPTSTSLKAMPNMG-QAIFGLKAN--RGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 429
            ++V TSFIR  P   SL+++P+   Q++FGLK+   RGGRV AMATYKVK ITP GE E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG+VDQS+QSFLDD+QIGEGFVLTCAAYPTSDVTIETHKEE++
Sbjct:    9 AIVGTSFIRRSPAPISLRSLPSANTQSLFGLKSGTARGGRVTAMATYKVKFITPEGELEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEEDI 147          
BLAST of EY669643 vs. ExPASy Swiss-Prot
Match: FER_CAPAN (Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP1 PE=1 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 7.200e-50
Identity = 92/138 (66.67%), Postives = 112/138 (81.16%), Query Frame = 1
Query:   22 SMVSTSFIRSKPTSTSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 435
            +M+STSF+  KP  TSLK +PN+G+A+FGLK+  GG+V  MA+YKVKLITP G  E +CPD+ +ILD AEEAG DLPYSCRAG+CSSC GK+  G VDQ++ +FLDDDQ+ EG+VLTC AYP SDVTIETHKE EL G
Sbjct:    7 TMISTSFMPRKPAVTSLKPIPNVGEALFGLKSANGGKVTCMASYKVKLITPDGPIEFDCPDNVYILDQAEEAGHDLPYSCRAGSCSSCAGKIAGGAVDQTDGNFLDDDQLEEGWVLTCVAYPQSDVTIETHKEAELVG 144          
BLAST of EY669643 vs. ExPASy Swiss-Prot
Match: FER1_ARATH (Ferredoxin-1, chloroplastic OS=Arabidopsis thaliana GN=FD1 PE=1 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 2.095e-49
Identity = 94/139 (67.63%), Postives = 118/139 (84.89%), Query Frame = 1
Query:   22 SMVSTSFIRSKPTSTSLKAMPNMG-QAIFGLKAN--RGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 429
            ++VSTSF+R + T  SL+++P    Q++FGLK++  RGGRV AMATYKVK ITP GE+E+ C +D ++LDAAEEAGLDLPYSCRAG+CSSC GKVVSG++DQS+QSFLDD+Q+ EG+VLTC AYPTSDV IETHKEE +
Sbjct:    9 AIVSTSFLRRQQTPISLRSLPFANTQSLFGLKSSTARGGRVTAMATYKVKFITPEGEQEVECEEDVYVLDAAEEAGLDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEAI 147          
BLAST of EY669643 vs. ExPASy Swiss-Prot
Match: FER1_SOLLC (Ferredoxin-1, chloroplastic OS=Solanum lycopersicum GN=SEND33 PE=2 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 4.667e-49
Identity = 92/136 (67.65%), Postives = 109/136 (80.15%), Query Frame = 1
Query:   22 SMVSTSFIRSKPTSTSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 429
            +M+STSF+  KP  TSLKA+ N+G+A+FGLK+ R GR+  MA+YKVKLITP G  E  CPDD +ILD AEE G DLPYSCRAG+CSSC GKV +G+VDQS+ +FLD+DQ   GFVLTC AYP  DVTIETHKEEEL
Sbjct:    7 TMISTSFLPRKPAVTSLKAISNVGEALFGLKSGRNGRITCMASYKVKLITPEGPIEFECPDDVYILDQAEEEGHDLPYSCRAGSCSSCAGKVTAGSVDQSDGNFLDEDQEAAGFVLTCVAYPKGDVTIETHKEEEL 142          
BLAST of EY669643 vs. ExPASy Swiss-Prot
Match: FER1_MESCR (Ferredoxin-1, chloroplastic OS=Mesembryanthemum crystallinum PE=2 SV=1)

HSP 1 Score: 182.956 bits (463), Expect = 1.835e-45
Identity = 91/136 (66.91%), Postives = 111/136 (81.62%), Query Frame = 1
Query:   28 VSTSFIRSKPTSTSLKAMP-NMGQAIFGLKANRG-GRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 429
            +ST+F    P  T+  A+P N+G+A+FGLK++   GRV AMA YKV L+TP G++E+ CPDD +ILDAAEEAG+DLPYSCRAG+CSSC GKV SG+V+Q + SFLDDDQI EG+VLTC AYPT DVTIETHKEEEL
Sbjct:   13 MSTAFAPKTPPMTA--ALPTNVGRALFGLKSSASRGRVTAMAAYKVTLVTPEGKQELECPDDVYILDAAEEAGIDLPYSCRAGSCSSCAGKVTSGSVNQDDGSFLDDDQIKEGWVLTCVAYPTGDVTIETHKEEEL 146          
BLAST of EY669643 vs. ExPASy Swiss-Prot
Match: FER_SILPR (Ferredoxin, chloroplastic OS=Silene pratensis GN=PETF PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 3.461e-44
Identity = 89/135 (65.93%), Postives = 104/135 (77.04%), Query Frame = 1
Query:   28 VSTSFIRSKPTSTSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITP-GGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 429
            VS S +  +    +     NMGQA+FGLKA   GRV AMATYKV LIT   G    +CPDD ++LD AEE G+DLPYSCRAG+CSSC GKVV+G+VDQS+QSFLDDDQI  G+VLTCAAYP++DVTIETHKEEEL
Sbjct:   10 VSASLLPKQQPMVASSLPTNMGQALFGLKAGSRGRVTAMATYKVTLITKESGTVTFDCPDDVYVLDQAEEEGIDLPYSCRAGSCSSCAGKVVAGSVDQSDQSFLDDDQIEAGWVLTCAAYPSADVTIETHKEEEL 144          
BLAST of EY669643 vs. ExPASy Swiss-Prot
Match: FER1_PEA (Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PETF PE=1 SV=2)

HSP 1 Score: 175.252 bits (443), Expect = 3.827e-43
Identity = 86/136 (63.24%), Postives = 100/136 (73.53%), Query Frame = 1
Query:   28 VSTSFIRSKPTSTSLKAMPNMGQAIFGLKAN--RGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 429
            VSTSF+R++P   S+           GLK +  RG   VAMA+YKVKL+TP G +E  CP D +ILD AEE G+DLPYSCRAG+CSSC GKVV G VDQS+ SFLDD+QI  GFVLTC AYPTSDV IETHKEE+L
Sbjct:   12 VSTSFLRTQPMPMSVTTTKAFSNGFLGLKTSLKRGDLAVAMASYKVKLVTPDGTQEFECPSDVYILDHAEEVGIDLPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEEDL 147          
BLAST of EY669643 vs. ExPASy Swiss-Prot
Match: FER1_SPIOL (Ferredoxin-1, chloroplastic OS=Spinacia oleracea GN=PETF PE=1 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 1.454e-42
Identity = 85/136 (62.50%), Postives = 107/136 (78.68%), Query Frame = 1
Query:   28 VSTSFIRSKPTSTSLKAMP-NMGQAIFGLKA-NRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 429
            ++T+F+        + A+P N G+++FGLK  +RGGR+  MA YKV L+TP G  E  CPDD +ILDAAEE G+DLPYSCRAG+CSSC GK+ +G+++Q +QSFLDDDQI EG+VLTCAAYP SDVTIETHKEEEL
Sbjct:   11 MATTFVPKPQAPPMMAALPSNTGRSLFGLKTGSRGGRMT-MAAYKVTLVTPTGNVEFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKEEEL 145          
BLAST of EY669643 vs. ExPASy Swiss-Prot
Match: FER1_MAIZE (Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE=1 SV=1)

HSP 1 Score: 170.629 bits (431), Expect = 9.425e-42
Identity = 86/135 (63.70%), Postives = 103/135 (76.30%), Query Frame = 1
Query:   31 STSFIRSKPTSTSLKAMPNMGQAIFGLKANRGGRVVAMATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEELAG 435
            S+S +R+ P  T++ A+P     I G  A+   R+ A ATY VKLITP GE E+  PDD +ILD AEE G+DLPYSCRAG+CSSC GKVVSG+VDQS+QS+LDD QI +G+VLTC AYPTSDV IETHKEEEL G
Sbjct:   16 SSSSLRAAPAPTAV-ALPAAKVGIMGRSASSRRRLRAQATYNVKLITPEGEVELQVPDDVYILDQAEEDGIDLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEEELTG 149          
BLAST of EY669643 vs. ExPASy Swiss-Prot
Match: FER_BRANA (Ferredoxin OS=Brassica napus PE=1 SV=1)

HSP 1 Score: 170.244 bits (430), Expect = 1.231e-41
Identity = 79/95 (83.16%), Postives = 87/95 (91.58%), Query Frame = 1
Query:  145 ATYKVKLITPGGEEEINCPDDSFILDAAEEAGLDLPYSCRAGACSSCTGKVVSGTVDQSEQSFLDDDQIGEGFVLTCAAYPTSDVTIETHKEEEL 429
            ATYKVK ITP GE+E+ C DD ++LDAAEEAG+DLPYSCRAG+CSSC GKVVSG VDQS++SFLDDDQI EGFVLTCAAYPTSDVTIETHKEEEL
Sbjct:    1 ATYKVKFITPEGEQEVECDDDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGFVDQSDESFLDDDQIAEGFVLTCAAYPTSDVTIETHKEEEL 95          
The following BLAST results are available for this feature:
BLAST of EY669643 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 110
Match NameE-valueIdentityDescription
FER2_ARATH2.644e-5271.94Ferredoxin-2, chloroplastic OS=Arabidopsis thalian... [more]
FER_CAPAN7.200e-5066.67Ferredoxin, chloroplastic OS=Capsicum annuum GN=AP... [more]
FER1_ARATH2.095e-4967.63Ferredoxin-1, chloroplastic OS=Arabidopsis thalian... [more]
FER1_SOLLC4.667e-4967.65Ferredoxin-1, chloroplastic OS=Solanum lycopersicu... [more]
FER1_MESCR1.835e-4566.91Ferredoxin-1, chloroplastic OS=Mesembryanthemum cr... [more]
FER_SILPR3.461e-4465.93Ferredoxin, chloroplastic OS=Silene pratensis GN=P... [more]
FER1_PEA3.827e-4363.24Ferredoxin-1, chloroplastic OS=Pisum sativum GN=PE... [more]
FER1_SPIOL1.454e-4262.50Ferredoxin-1, chloroplastic OS=Spinacia oleracea G... [more]
FER1_MAIZE9.425e-4263.70Ferredoxin-1, chloroplastic OS=Zea mays GN=FDX1 PE... [more]
FER_BRANA1.231e-4183.16Ferredoxin OS=Brassica napus PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-102-050-E10-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY669643 ID=EY669643; Name=EY669643; organism=Citrus sinensis; type=EST; length=830bp
CAAAATGGCCACCCTCTCCTTTCCATGGTCAGCACCTCATTCATCAGAAG
CAAGCCTACATCGACCAGCCTCAAAGCCATGCCTAACATGGGTCAGGCTA
TATTTGGCCTCAAAGCCAACAGAGGTGGCCGTGTTGTAGCCATGGCTACA
TACAAAGTCAAGCTCATTACACCTGGGGGAGAGGAAGAAATCAACTGTCC
TGATGACTCGTTTATTCTTGATGCTGCTGAAGAAGCTGGGCTTGATCTTC
CGTACTCATGCAGGGCTGGGGCTTGCTCTTCCTGTACTGGGAAAGTTGTG
TCTGGAACCGTTGACCAGTCGGAGCAAAGCTTTCTGGATGATGATCAAAT
TGGAGAAGGTTTTGTTCTCACTTGTGCTGCTTATCCAACAAGTGATGTTA
CTATAGAGACTCACAAGGAAGAGGAGCTCGCTGGTTAATAATGTGCTCTT
GATATCTCATTATTATCTTCTCTTTTATGTGTTGTGTTTTGTCTGATTAT
TTTAATGCTTTGAAAGGGATATTGAGTAATTTGAGAATGATTCTTGTAAT
GTGTTTTTATTTCTTGTTGCAAAGAAGTTGTTGTAATTGCACCGGCCATG
AATGCGCATCGTACCTAGAGGGTGAGGTTTCTCATCCCATCCAAACATGG
TACCGTTCTATAATTAAGAGTCAAGCAAGAACAATAAATCTTTCGTTTTA
TGTAAAAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGCCGTTCTAGAAGGA
CCCAAGCTTTCCTAACGCCGTGGATGGGAAACTCATAACCTCTTTTATTA
GGGGCCCCCAAAATTCCAATTCCCTTGGCC
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