DR908498

Overview
NameDR908498
Unique NameDR908498
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3784 contig Csv1_Contig3784:448..1075. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908498 vs. ExPASy Swiss-Prot
Match: NDUS1_SOLTU (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 1.449e-77
Identity = 140/176 (79.55%), Postives = 156/176 (88.64%), Query Frame = 2
Query:   62 PESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDRGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLK 589
            PES   IESAKFVYLMGADDV+L+KLP+DAFVVYQGHHGDRGVYRANVILPASAF+EKEG YENTEGC Q TLPAVPTVGDARDDWKI+RALSEVAG+ LPYD++G IRSRI+TVAPNLL VDER+PAT   SL+PE+  ++  TPF  AVENFYMTD+ITRASK MAQCSA+L K
Sbjct:  563 PESDKCIESAKFVYLMGADDVNLDKLPDDAFVVYQGHHGDRGVYRANVILPASAFTEKEGIYENTEGCAQITLPAVPTVGDARDDWKIVRALSEVAGVGLPYDSLGAIRSRIKTVAPNLLEVDERQPATFSTSLRPEVSQKVSATPFTPAVENFYMTDAITRASKIMAQCSALLKK 738          
BLAST of DR908498 vs. ExPASy Swiss-Prot
Match: NDUS1_ARATH (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Arabidopsis thaliana GN=EMB1467 PE=1 SV=2)

HSP 1 Score: 287.73 bits (735), Expect = 3.228e-77
Identity = 136/176 (77.27%), Postives = 160/176 (90.91%), Query Frame = 2
Query:   65 ESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDRGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQCSAMLLKK 592
            +S+ ++ESAKFVYLMGADDV+++K+P DAFVVYQGHHGD+ VYRANVILPASAF+EKEGTYENTEG TQQT+PAVPTVGDARDDWKI+RALSEV+G++LPY++I G+RSRI++VAPNL+H DEREPA  GPSLKPE K  M  TPF + VENFYMT+SITRASK MAQCSA+LLKK
Sbjct:  570 QSAKALESAKFVYLMGADDVNVDKIPKDAFVVYQGHHGDKAVYRANVILPASAFTEKEGTYENTEGFTQQTVPAVPTVGDARDDWKIVRALSEVSGVKLPYNSIEGVRSRIKSVAPNLVHTDEREPAAFGPSLKPECKEAMSTTPFQTVVENFYMTNSITRASKIMAQCSAVLLKK 745          
BLAST of DR908498 vs. ExPASy Swiss-Prot
Match: NDUS1_NEUCR (NADH-ubiquinone oxidoreductase 78 kDa subunit, mitochondrial OS=Neurospora crassa GN=nuo-78 PE=1 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 3.857e-38
Identity = 80/177 (45.20%), Postives = 111/177 (62.71%), Query Frame = 2
Query:   62 PESSNSIESAKFVYLMGADDVDLEKLPNDAFVVYQGHHGDRGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATLGPSLKPEIKSE-----MDLTPFGSAVENFYMTDSITRASKTMAQCSA 577
            P +  +    KFV+L+GAD+ +   +P DAF+VYQGHHGDRG   A+++LP +A++EK GTY NTEG  Q T  A    G AR DWKI+RA+SE  G+RLPYD +  +R R+  ++P L   D  EP +L    K ++  +         P    +ENFY TD+I+R+S TMA+CSA
Sbjct:  539 PSAEIAQTKPKFVWLLGADEFNEADIPKDAFIVYQGHHGDRGAQIADIVLPGAAYTEKAGTYVNTEGRVQMTRAATGLPGAARTDWKILRAVSEYLGVRLPYDDVAQLRDRMVEISPALSSYDIIEPPSLQQLSKVQLVEQNQGATATNEPLKKVIENFYFTDAISRSSPTMARCSA 715          
BLAST of DR908498 vs. ExPASy Swiss-Prot
Match: NDUS1_BOVIN (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Bos taurus GN=NDUFS1 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 5.038e-38
Identity = 84/168 (50.00%), Postives = 112/168 (66.67%), Query Frame = 2
Query:   92 KFVYLMGADD--VDLEKLPNDAFVVYQGHHGDRGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPATL---GPSLKPEIKSEM---DLTPFGSAVENFYMTDSITRASKTMAQC 571
            K ++L+GAD   +  + LP D F+VYQGHHGD G   A+VILP +A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AGM LPYDT+  +R+R+  V+PNL+  D+ E A        L   +  ++    L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  543 KMLFLLGADGGCITRQDLPKDCFIVYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRNRLEEVSPNLVRYDDVEGANYFQQASELSKLVNQQLLADPLVPPQLTIKDFYMTDSISRASQTMAKC 710          
BLAST of DR908498 vs. ExPASy Swiss-Prot
Match: NDUS1_MOUSE (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Mus musculus GN=Ndufs1 PE=1 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 6.579e-38
Identity = 82/169 (48.52%), Postives = 115/169 (68.05%), Query Frame = 2
Query:   92 KFVYLMGADD--VDLEKLPNDAFVVYQGHHGDRGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDE-------REPATLGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 571
            K ++L+GAD   +  + LP D F+VYQGHHGD G   A+VILP +A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AG+ LPYDT+  +R+R+  V+PNL+  D+       ++ + L   +  E+ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  543 KMLFLLGADGGCITRQDLPKDCFIVYQGHHGDVGAPMADVILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGITLPYDTLDQVRNRLEEVSPNLVRYDDIEETNYFQQASELAKLVNQEVLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710          
BLAST of DR908498 vs. ExPASy Swiss-Prot
Match: NDUS1_PANTR (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Pan troglodytes GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.122e-37
Identity = 83/169 (49.11%), Postives = 114/169 (67.46%), Query Frame = 2
Query:   92 KFVYLMGADD--VDLEKLPNDAFVVYQGHHGDRGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPAT-------LGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 571
            K ++L+GAD   +  + LP D F++YQGHHGD G   A+VILP +A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AGM LPYDT+  +R+R+  V+PNL+  D+ E A        L   +  ++ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  543 KVLFLLGADGGCITRQDLPKDCFIIYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710          
BLAST of DR908498 vs. ExPASy Swiss-Prot
Match: NDUS1_HUMAN (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Homo sapiens GN=NDUFS1 PE=1 SV=3)

HSP 1 Score: 156.377 bits (394), Expect = 1.122e-37
Identity = 83/169 (49.11%), Postives = 114/169 (67.46%), Query Frame = 2
Query:   92 KFVYLMGADD--VDLEKLPNDAFVVYQGHHGDRGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPAT-------LGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 571
            K ++L+GAD   +  + LP D F++YQGHHGD G   A+VILP +A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AGM LPYDT+  +R+R+  V+PNL+  D+ E A        L   +  ++ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  543 KVLFLLGADGGCITRQDLPKDCFIIYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710          
BLAST of DR908498 vs. ExPASy Swiss-Prot
Match: NDUS1_GORGO (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Gorilla gorilla gorilla GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 1.122e-37
Identity = 83/169 (49.11%), Postives = 114/169 (67.46%), Query Frame = 2
Query:   92 KFVYLMGADD--VDLEKLPNDAFVVYQGHHGDRGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPAT-------LGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 571
            K ++L+GAD   +  + LP D F++YQGHHGD G   A+VILP +A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AGM LPYDT+  +R+R+  V+PNL+  D+ E A        L   +  ++ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  543 KVLFLLGADGGCITRQDLPKDCFIIYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGMTLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710          
BLAST of DR908498 vs. ExPASy Swiss-Prot
Match: NDUS1_RAT (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Rattus norvegicus GN=Ndufs1 PE=1 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.500e-37
Identity = 84/169 (49.70%), Postives = 113/169 (66.86%), Query Frame = 2
Query:   92 KFVYLMGADD--VDLEKLPNDAFVVYQGHHGDRGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPAT-------LGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 571
            K ++L+GAD   +  + LP D F+VYQGHHGD G   A+VILP +A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AG+ LPYDT+  +R+R+  V+PNL+  D+ E A        L   +  E  ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  543 KLLFLLGADGGCITRQDLPKDCFIVYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGITLPYDTLDQVRNRLGEVSPNLVRYDDVEEANYFQQASELAKLVDQEFLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710          
BLAST of DR908498 vs. ExPASy Swiss-Prot
Match: NDUS1_MACFA (NADH-ubiquinone oxidoreductase 75 kDa subunit, mitochondrial OS=Macaca fascicularis GN=NDUFS1 PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 3.265e-37
Identity = 82/169 (48.52%), Postives = 114/169 (67.46%), Query Frame = 2
Query:   92 KFVYLMGADD--VDLEKLPNDAFVVYQGHHGDRGVYRANVILPASAFSEKEGTYENTEGCTQQTLPAVPTVGDARDDWKIIRALSEVAGMRLPYDTIGGIRSRIRTVAPNLLHVDEREPAT-------LGPSLKPEIKSEMDLTPFGSAVENFYMTDSITRASKTMAQC 571
            K ++L+GAD   +  + LP D F++YQGHHGD G   A+VILP +A++EK  TY NTEG  QQT  AV   G AR+DWKIIRALSE+AG+ LPYDT+  +R+R+  V+PNL+  D+ E A        L   +  ++ ++  L P    +++FYMTDSI+RAS+TMA+C
Sbjct:  543 KVLFLLGADGGCITRQDLPKDCFIIYQGHHGDVGAPIADVILPGAAYTEKSATYVNTEGRAQQTKVAVTPPGLAREDWKIIRALSEIAGITLPYDTLDQVRNRLEEVSPNLVRYDDIEGANYFQQANELSKLVNQQLLAD-PLVPPQLTIKDFYMTDSISRASQTMAKC 710          
The following BLAST results are available for this feature:
BLAST of DR908498 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
NDUS1_SOLTU1.449e-7779.55NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_ARATH3.228e-7777.27NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_NEUCR3.857e-3845.20NADH-ubiquinone oxidoreductase 78 kDa subunit, mit... [more]
NDUS1_BOVIN5.038e-3850.00NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_MOUSE6.579e-3848.52NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_PANTR1.122e-3749.11NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_HUMAN1.122e-3749.11NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_GORGO1.122e-3749.11NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_RAT2.500e-3749.70NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]
NDUS1_MACFA3.265e-3748.52NADH-ubiquinone oxidoreductase 75 kDa subunit, mit... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16626 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-12_A09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908498 ID=DR908498; Name=DR908498; organism=Citrus sinensis; type=EST; length=628bp
TGGGCTCAATGTTTTGCTTCTCAATGCTGCTCAAGCTGCAGCCCTGGACC
TCGGACTTGTGCCTGAGTCCAGCAACAGCATTGAGTCTGCAAAGTTTGTC
TATCTCATGGGTGCCGATGATGTGGACTTGGAAAAGCTTCCAAATGATGC
CTTTGTTGTTTATCAGGGCCATCATGGTGACCGTGGTGTCTATCGCGCCA
ATGTAATTCTCCCAGCATCAGCTTTTAGCGAGAAGGAAGGGACTTACGAA
AATACTGAAGGTTGCACTCAACAGACGTTGCCTGCAGTTCCAACTGTTGG
TGATGCCAGAGATGATTGGAAGATAATTCGGGCACTTTCTGAGGTGGCAG
GGATGCGTTTACCTTATGATACAATTGGAGGCATTCGATCCCGGATCAGG
ACAGTGGCACCAAATCTCTTGCATGTGGATGAGAGAGAACCTGCTACTCT
TGGGCCTTCTTTGAAGCCCGAGATCAAAAGTGAGATGGATTTGACTCCTT
TCGGTAGTGCTGTTGAGAATTTTTATATGACTGATTCTATTACCAGAGCA
TCAAAGACCATGGCCCAATGCAGTGCAATGCTGTTGAAGAAGTGAGTGAT
TGGCTTTGCGGATTACTCAAATAATTGT
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