DR908497

Overview
NameDR908497
Unique NameDR908497
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length628
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3888 contig Csv1_Contig3888:1581..2208. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR908497 vs. ExPASy Swiss-Prot
Match: ATPA_CITSI (ATP synthase subunit alpha, chloroplastic OS=Citrus sinensis GN=atpA PE=3 SV=1)

HSP 1 Score: 291.197 bits (744), Expect = 2.919e-78
Identity = 159/191 (83.25%), Postives = 159/191 (83.25%), Query Frame = 1 
Query:    1 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQF 573
            LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT                RFLLQEQF
Sbjct:  317 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTEEAEALLQEAIQEQKERFLLQEQF 507
[Close]
BLAST of DR908497 vs. ExPASy Swiss-Prot
Match: ATPA_EUCGG (ATP synthase subunit alpha, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=atpA PE=3 SV=1)

HSP 1 Score: 284.648 bits (727), Expect = 2.732e-76
Identity = 155/190 (81.58%), Postives = 157/190 (82.63%), Query Frame = 1 
Query:    1 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 570
            LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+QAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTY+KTNKPQFQEIISSTK FT                RFLLQEQ
Sbjct:  317 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYVKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQKERFLLQEQ 506
[Close]
BLAST of DR908497 vs. ExPASy Swiss-Prot
Match: ATPA_DAUCA (ATP synthase subunit alpha, chloroplastic OS=Daucus carota GN=atpA PE=3 SV=1)

HSP 1 Score: 283.878 bits (725), Expect = 4.661e-76
Identity = 154/190 (81.05%), Postives = 157/190 (82.63%), Query Frame = 1 
Query:    1 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 570
            LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APL VEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFT                RF+LQEQ
Sbjct:  317 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLAVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTEEAEALLKEAIQEQMERFILQEQ 506
[Close]
BLAST of DR908497 vs. ExPASy Swiss-Prot
Match: ATPA_MANES (ATP synthase subunit alpha, chloroplastic OS=Manihot esculenta GN=atpA PE=3 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.038e-75
Identity = 153/190 (80.53%), Postives = 157/190 (82.63%), Query Frame = 1 
Query:    1 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 570
            LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF++QEQ
Sbjct:  317 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFVELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAETLLKEAIQEQKERFVIQEQ 506
[Close]
BLAST of DR908497 vs. ExPASy Swiss-Prot
Match: ATPA_CARPA (ATP synthase subunit alpha, chloroplastic OS=Carica papaya GN=atpA PE=3 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.038e-75
Identity = 154/189 (81.48%), Postives = 156/189 (82.54%), Query Frame = 1 
Query:    1 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQE 567
            LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RFLLQE
Sbjct:  317 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAETILKEAIQEQMERFLLQE 505
[Close]
BLAST of DR908497 vs. ExPASy Swiss-Prot
Match: ATPA_TOBAC (ATP synthase subunit alpha, chloroplastic OS=Nicotiana tabacum GN=atpA PE=2 SV=2)

HSP 1 Score: 282.337 bits (721), Expect = 1.356e-75
Identity = 152/190 (80.00%), Postives = 157/190 (82.63%), Query Frame = 1 
Query:    1 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 570
            LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFN+GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  317 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQMDRFILQEQ 506
[Close]
BLAST of DR908497 vs. ExPASy Swiss-Prot
Match: ATPA_NICTO (ATP synthase subunit alpha, chloroplastic OS=Nicotiana tomentosiformis GN=atpA PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.356e-75
Identity = 152/190 (80.00%), Postives = 157/190 (82.63%), Query Frame = 1 
Query:    1 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 570
            LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFN+GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  317 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQTDRFILQEQ 506
[Close]
BLAST of DR908497 vs. ExPASy Swiss-Prot
Match: ATPA_NICSY (ATP synthase subunit alpha, chloroplastic OS=Nicotiana sylvestris GN=atpA PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.356e-75
Identity = 152/190 (80.00%), Postives = 157/190 (82.63%), Query Frame = 1 
Query:    1 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 570
            LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFN+GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  317 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQMDRFILQEQ 506
[Close]
BLAST of DR908497 vs. ExPASy Swiss-Prot
Match: ATPA_HELAN (ATP synthase subunit alpha, chloroplastic OS=Helianthus annuus GN=atpA PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.356e-75
Identity = 152/190 (80.00%), Postives = 157/190 (82.63%), Query Frame = 1 
Query:    1 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 570
            LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APL VEEQI+TIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTKIFT                RF+LQEQ
Sbjct:  317 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLAVEEQILTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTEEAEAILKEAIQEQRERFILQEQ 506
[Close]
BLAST of DR908497 vs. ExPASy Swiss-Prot
Match: ATPA_ATRBE (ATP synthase subunit alpha, chloroplastic OS=Atropa belladonna GN=atpA PE=3 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.356e-75
Identity = 152/190 (80.00%), Postives = 157/190 (82.63%), Query Frame = 1 
Query:    1 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNAGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKXXXXXXXXXXXXXXXXSDLDKATQNQLARGQRLRELLKQAQAAPLTVEEQIMTIYTGTNGYLDSLEIGQVRKFLVELRTYLKTNKPQFQEIISSTKIFTXXXXXXXXXXXXXXXXRFLLQEQ 570
            LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFN+GIRPAINVGISVSRVGSAAQIKAMKQVAGKLK                SDLDKATQNQLARGQRLRELLKQ+Q+APLTVEEQIMTIYTGTNGYLDSLE+GQVRKFLVELRTYLKTNKPQFQEIISSTK FT                RF+LQEQ
Sbjct:  317 LPIVETQSGDVSAYIPTNVISITDGQIFLSADLFNSGIRPAINVGISVSRVGSAAQIKAMKQVAGKLKLELAQFAELEAFAQFASDLDKATQNQLARGQRLRELLKQSQSAPLTVEEQIMTIYTGTNGYLDSLEVGQVRKFLVELRTYLKTNKPQFQEIISSTKTFTEEAEALLKEAIQEQMKRFILQEQ 506
The following BLAST results are available for this feature:
BLAST of DR908497 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPA_CITSI2.919e-7883.25ATP synthase subunit alpha, chloroplastic OS=Citru... [more]
ATPA_EUCGG2.732e-7681.58ATP synthase subunit alpha, chloroplastic OS=Eucal... [more]
ATPA_DAUCA4.661e-7681.05ATP synthase subunit alpha, chloroplastic OS=Daucu... [more]
ATPA_MANES1.038e-7580.53ATP synthase subunit alpha, chloroplastic OS=Manih... [more]
ATPA_CARPA1.038e-7581.48ATP synthase subunit alpha, chloroplastic OS=Caric... [more]
ATPA_TOBAC1.356e-7580.00ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_NICTO1.356e-7580.00ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_NICSY1.356e-7580.00ATP synthase subunit alpha, chloroplastic OS=Nicot... [more]
ATPA_HELAN1.356e-7580.00ATP synthase subunit alpha, chloroplastic OS=Helia... [more]
ATPA_ATRBE1.356e-7580.00ATP synthase subunit alpha, chloroplastic OS=Atrop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16625 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-03_A03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908497 ID=DR908497; Name=DR908497; organism=Citrus sinensis; type=EST; length=628bp
TTACCAATAGTTGAGACCCAGTCGGGAGATGTTTCGGCTTATATTCCTAC
TAATGTAATTTCCATTACAGACGGGCAAATATTCTTATCCGCGGATTTAT
TCAATGCTGGAATCAGACCCGCTATTAATGTGGGTATTTCCGTCTCTCGA
GTAGGATCCGCAGCTCAAATTAAAGCTATGAAACAAGTAGCCGGCAAATT
AAAATTGGAATTGGCACAATTCGCAGAATTAGAAGCCTTTGCACAATTTG
CTTCTGATCTCGATAAAGCTACTCAGAACCAATTGGCAAGGGGTCAACGC
TTACGTGAGTTGCTCAAACAGGCCCAAGCAGCCCCTCTCACGGTGGAAGA
ACAGATAATGACTATTTATACAGGAACGAATGGTTATCTTGATTCATTAG
AAATTGGTCAAGTAAGAAAATTTCTCGTTGAGTTACGTACTTACTTAAAA
ACGAATAAACCTCAGTTCCAAGAAATAATATCTTCTACCAAGATATTCAC
CGAAGAAGCAGAAGCCCTTTTGCAAGAAGCTATTCAGGAACAAAAGGAAC
GTTTTCTACTTCAGGAACAATTCTAAATAAAAAACCACTCTTATTCTTAC
TTTATAATACTTAATAATAAAAAAAAAA
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