DR908489

Overview
NameDR908489
Unique NameDR908489
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 231.876 bits (590), Expect = 2.123e-60
Identity = 102/160 (63.75%), Postives = 134/160 (83.75%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLK 567
            R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM P E+ + LGL  L+NR W+IQ TCA  GDGLY+GLDWL++TLK
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLK 178          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF1_LOCMI (ADP-ribosylation factor 1 OS=Locusta migratoria GN=ARF1 PE=2 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.376e-59
Identity = 103/173 (59.54%), Postives = 135/173 (78.03%), Query Frame = 1
Query:   49 ANCLMSSLATVRCRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLK 567
            AN           R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRERIG+A++E   ++ +  + ++V+L+FANKQD+  AM   E+ + LGL  L+NR W+IQ TCA  GDGLY+GLDWL++ LK
Sbjct:    6 ANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 178          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF1_DROME (ADP-ribosylation factor 1 OS=Drosophila melanogaster GN=Arf79F PE=1 SV=2)

HSP 1 Score: 229.18 bits (583), Expect = 1.376e-59
Identity = 103/173 (59.54%), Postives = 135/173 (78.03%), Query Frame = 1
Query:   49 ANCLMSSLATVRCRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLK 567
            AN           R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRERIG+A++E   ++ +  + ++V+L+FANKQD+  AM   E+ + LGL  L+NR W+IQ TCA  GDGLY+GLDWL++ LK
Sbjct:    6 ANLFKGLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERIGEAREELMRMLAEDELRDAVLLIFANKQDLPNAMNAAEITDKLGLHSLRNRNWYIQATCATSGDGLYEGLDWLSNQLK 178          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 1.798e-59
Identity = 103/175 (58.86%), Postives = 137/175 (78.29%), Query Frame = 1
Query:   52 NCLMSSLATVRCRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLKEMR 576
            N L S +     R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLY+GLDWLA+ LK  +
Sbjct:    7 NLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 1.798e-59
Identity = 103/175 (58.86%), Postives = 137/175 (78.29%), Query Frame = 1
Query:   52 NCLMSSLATVRCRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLKEMR 576
            N L S +     R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLY+GLDWLA+ LK  +
Sbjct:    7 NLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF3_PONAB (ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 PE=2 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 1.798e-59
Identity = 103/175 (58.86%), Postives = 137/175 (78.29%), Query Frame = 1
Query:   52 NCLMSSLATVRCRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLKEMR 576
            N L S +     R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLY+GLDWLA+ LK  +
Sbjct:    7 NLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF3_MOUSE (ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 1.798e-59
Identity = 103/175 (58.86%), Postives = 137/175 (78.29%), Query Frame = 1
Query:   52 NCLMSSLATVRCRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLKEMR 576
            N L S +     R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLY+GLDWLA+ LK  +
Sbjct:    7 NLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF3_HUMAN (ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 PE=1 SV=2)

HSP 1 Score: 228.794 bits (582), Expect = 1.798e-59
Identity = 103/175 (58.86%), Postives = 137/175 (78.29%), Query Frame = 1
Query:   52 NCLMSSLATVRCRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLKEMR 576
            N L S +     R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLY+GLDWLA+ LK  +
Sbjct:    7 NLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF3_BOVIN (ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE=2 SV=3)

HSP 1 Score: 228.794 bits (582), Expect = 1.798e-59
Identity = 103/175 (58.86%), Postives = 137/175 (78.29%), Query Frame = 1
Query:   52 NCLMSSLATVRCRVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLKEMR 576
            N L S +     R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+ +A++E   ++ +  + ++V+LVFANKQD+  AM   E+ + LGL  L++R W+IQ TCA  GDGLY+GLDWLA+ LK  +
Sbjct:    7 NLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKNKK 181          
BLAST of DR908489 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 228.024 bits (580), Expect = 3.066e-59
Identity = 102/160 (63.75%), Postives = 133/160 (83.12%), Query Frame = 1
Query:   88 RVVMLGLDAAGKTTILYKLHIGEVLSTVPTIGFNVEKVQYKNVIFTVWDVGGQEKLRPLWRHYFNNTDGLIYVVDSLDRERIGKAKQEFQAIIKDPFMLNSVILVFANKQDMKGAMTPMEVCEGLGLFDLKNRKWHIQGTCALKGDGLYQGLDWLASTLK 567
            R++M+GLDAAGKTTILYKL +GE+++T+PTIGFNVE V+YKN+ FTVWDVGGQ+K+RPLWRHYF NT GLI+VVDS DRER+G+A++E   ++ +  + ++V+LVFANKQD+  AM   EV + LGL  L+NR W+IQ TCA  GDGLY+GLDWL++ LK
Sbjct:   19 RILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLK 178          
The following BLAST results are available for this feature:
BLAST of DR908489 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
ARF_DUGJA2.123e-6063.75ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]
ARF1_LOCMI1.376e-5959.54ADP-ribosylation factor 1 OS=Locusta migratoria GN... [more]
ARF1_DROME1.376e-5959.54ADP-ribosylation factor 1 OS=Drosophila melanogast... [more]
ARF3_TAKRU1.798e-5958.86ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]
ARF3_RAT1.798e-5958.86ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]
ARF3_PONAB1.798e-5958.86ADP-ribosylation factor 3 OS=Pongo abelii GN=ARF3 ... [more]
ARF3_MOUSE1.798e-5958.86ADP-ribosylation factor 3 OS=Mus musculus GN=Arf3 ... [more]
ARF3_HUMAN1.798e-5958.86ADP-ribosylation factor 3 OS=Homo sapiens GN=ARF3 ... [more]
ARF3_BOVIN1.798e-5958.86ADP-ribosylation factor 3 OS=Bos taurus GN=ARF3 PE... [more]
ARF12_CAEEL3.066e-5963.75ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16617 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-13_G07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908489 ID=DR908489; Name=DR908489; organism=Citrus sinensis; type=EST; length=630bp
AGAAATCATCAACAAGCTCAAAGGGACGGGGAATGGGTCAAGCCTTCCGC
AAACTGTTTGATGTCTTCTTTGGCAACAGTGAGATGCCGGGTTGTGATGT
TAGGTCTGGATGCTGCGGGTAAAACAACCATACTGTACAAGCTGCACATT
GGTGAAGTTTTATCTACTGTTCCTACTATTGGTTTTAATGTCGAGAAAGT
TCAGTATAAGAATGTCATATTCACTGTTTGGGATGTTGGCGGACAAGAGA
AATTGAGGCCACTATGGAGGCATTATTTTAATAACACTGATGGACTGATC
TATGTTGTTGACTCCTTGGACCGGGAGAGAATTGGTAAAGCAAAGCAAGA
ATTTCAGGCCATTATCAAAGATCCTTTTATGCTGAACAGTGTCATTTTGG
TGTTTGCCAATAAACAGGACATGAAAGGAGCAATGACCCCAATGGAAGTA
TGTGAAGGATTAGGTCTCTTTGATCTCAAGAACAGGAAATGGCATATTCA
AGGGACTTGTGCACTTAAAGGAGATGGACTTTACCAAGGCTTGGATTGGT
TGGCTTCAACACTTAAGGAGATGAGAGCTGCTGGATACTCTTCAGTGGGC
ACCTCATCATTCTAGGGATCCAGGTTTACA
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