DR908488

Overview
NameDR908488
Unique NameDR908488
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length630
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908488 vs. ExPASy Swiss-Prot
Match: MYB82_ARATH (Transcription factor MYB82 OS=Arabidopsis thaliana GN=MYB82 PE=1 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 5.965e-31
Identity = 80/171 (46.78%), Postives = 97/171 (56.73%), Query Frame = 3
Query:    3 CRLRWKNYLRPNIKRGAISQQEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKCRFGKRKATAVDMGTHNINGGDCRENNDDGGSNSKLPAPPMCRNSLNASQGFEEERNDYDANTWTEGDCGGSFNNYLECAL-----IPPNNSTFVFDDEPFIAYLDSF 500
            CRLRWKNYLRPNIKRG++S QE+DLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKK    ++ A    +G                   +     P+    L  S G   E  + ++NTW E      ++ ++   L      P N  T VFD  P  ++ D F
Sbjct:   53 CRLRWKNYLRPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNSRRQNAPESIVGA------------------TPFTDKPVMSTELRRSHG---EGGEEESNTWMEETNHFGYDVHVGSPLPLISHYPDN--TLVFD--PCFSFTDFF 198          
BLAST of DR908488 vs. ExPASy Swiss-Prot
Match: MYB5_ARATH (Transcription repressor MYB5 OS=Arabidopsis thaliana GN=MYB5 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.345e-27
Identity = 56/105 (53.33%), Postives = 72/105 (68.57%), Query Frame = 3
Query:    3 CRLRWKNYLRPNIKRGAISQQEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKCRFGKRKATAVDMGTHN-INGGDCRENNDDGGSNSKLPAPPM 314
            CRLRW NYLRP++KRG I+  EEDLI+R+H+LLGNRWSLIAGR+PGRTDNE+KNYWNTHL KK          +D  TH  ++  +  +  ++     K P  P+
Sbjct:   64 CRLRWMNYLRPSVKRGGITSDEEDLILRLHRLLGNRWSLIAGRIPGRTDNEIKNYWNTHLRKKL-----LRQGIDPQTHKPLDANNIHKPEEEVSGGQKYPLEPI 163          
BLAST of DR908488 vs. ExPASy Swiss-Prot
Match: WER_ARATH (Transcription factor WER OS=Arabidopsis thaliana GN=WER PE=1 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.387e-26
Identity = 51/63 (80.95%), Postives = 58/63 (92.06%), Query Frame = 3
Query:    3 CRLRWKNYLRPNIKRGAISQQEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKK 191
            CRLRW NYL PN+KRG  ++QEEDLIIR+HKLLGNRWSLIA R+PGRTDN+VKNYWNTHL+KK
Sbjct:   57 CRLRWMNYLSPNVKRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 119          
BLAST of DR908488 vs. ExPASy Swiss-Prot
Match: MYB23_ARATH (Transcription factor MYB23 OS=Arabidopsis thaliana GN=MYB23 PE=1 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 7.545e-26
Identity = 54/74 (72.97%), Postives = 61/74 (82.43%), Query Frame = 3
Query:    3 CRLRWKNYLRPNIKRGAISQQEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKCRFGKRKATAV 224
            CRLRW NYL PN+ RG  + QEEDLIIR+HKLLGNRWSLIA R+PGRTDN+VKNYWNTHL+KK   G   +TAV
Sbjct:   53 CRLRWMNYLSPNVNRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGLGDH-STAV 125          
BLAST of DR908488 vs. ExPASy Swiss-Prot
Match: MYBC_MAIZE (Anthocyanin regulatory C1 protein OS=Zea mays GN=C1 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.287e-25
Identity = 55/84 (65.48%), Postives = 63/84 (75.00%), Query Frame = 3
Query:    3 CRLRWKNYLRPNIKRGAISQQEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKCRFGKRK-----ATAVDMGTH 239
            CRLRW NYLRPNI+RG IS  EEDLIIR+H+LLGNRWSLIAGRLPGRTDNE+KNYWN+ L ++   G          A D G+H
Sbjct:   53 CRLRWLNYLRPNIRRGNISYDEEDLIIRLHRLLGNRWSLIAGRLPGRTDNEIKNYWNSTLGRRAGAGAGAGGSWVVVAPDTGSH 136          
BLAST of DR908488 vs. ExPASy Swiss-Prot
Match: GL1_ARATH (Trichome differentiation protein GL1 OS=Arabidopsis thaliana GN=GL1 PE=1 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.867e-25
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 3
Query:    3 CRLRWKNYLRPNIKRGAISQQEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKK 191
            CRLRW NYL PN+ +G  ++QEEDLIIR+HKLLGNRWSLIA R+PGRTDN+VKNYWNTHL+KK
Sbjct:   55 CRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
BLAST of DR908488 vs. ExPASy Swiss-Prot
Match: GL1_ARALY (Trichome differentiation protein GL1 OS=Arabidopsis lyrata GN=GL1 PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 2.867e-25
Identity = 49/63 (77.78%), Postives = 57/63 (90.48%), Query Frame = 3
Query:    3 CRLRWKNYLRPNIKRGAISQQEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKK 191
            CRLRW NYL PN+ +G  ++QEEDLIIR+HKLLGNRWSLIA R+PGRTDN+VKNYWNTHL+KK
Sbjct:   55 CRLRWMNYLSPNVNKGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKK 117          
BLAST of DR908488 vs. ExPASy Swiss-Prot
Match: TT2_ARATH (Transcription factor TT2 OS=Arabidopsis thaliana GN=TT2 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.745e-25
Identity = 50/63 (79.37%), Postives = 57/63 (90.48%), Query Frame = 3
Query:    3 CRLRWKNYLRPNIKRGAISQQEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKK 191
            CRLRWKNYLRP IKRG IS  EE+LIIR+H LLGNRWSLIAGRLPGRTDNE+KN+WN++L K+
Sbjct:   55 CRLRWKNYLRPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKR 117          
BLAST of DR908488 vs. ExPASy Swiss-Prot
Match: MYB90_ARATH (Transcription factor MYB90 OS=Arabidopsis thaliana GN=MYB90 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 3.745e-25
Identity = 75/199 (37.69%), Postives = 102/199 (51.26%), Query Frame = 3
Query:    3 CRLRWKNYLRPNIKRGAISQQEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKK-----CRFGKRKATAVDMGT---------------HNINGGDCRENN----DDGGSNSKLPAPPMCRNSLNASQGFEEERNDY------DANTWTEGDCGGSFNNYLECALIP-----PNNSTFVFDDEPFIAYLD 494
            CRLRW NYL+P+IKRG +S  E DL++R+HKLLGNRWSLIAGRLPGRT N+VKNYWNTHL+KK     C+   +K   +   T                ++N G    N     D   S   L    +C NS+  ++  ++E++D+        N W E   G    N    A++P      + +T  FD E   +  D
Sbjct:   49 CRLRWLNYLKPSIKRGRLSNDEVDLLLRLHKLLGNRWSLIAGRLPGRTANDVKNYWNTHLSKKHESSCCKSKMKKKNIISPPTTPVQKIGVFKPRPRSFSVNNGCSHLNGLPEVDLIPSCLGLKKNNVCENSITCNK--DDEKDDFVNNLMNGDNMWLENLLG---ENQEADAIVPEATTAEHGATLAFDVEQLWSLFD 242          
BLAST of DR908488 vs. ExPASy Swiss-Prot
Match: MYB1_HORVU (Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1 PE=2 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 4.891e-25
Identity = 65/172 (37.79%), Postives = 91/172 (52.91%), Query Frame = 3
Query:    3 CRLRWKNYLRPNIKRGAISQQEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKCRFGKRKATAVDMGTHNINGGDCRENN----------DDGGSNSKLPAPPMCRNSLNA--SQGFEEERNDYDANTWTEGDCGGSFNNYLECALIPPNNSTFVFDDEPFI 482
            CRLRW NYLRP++KRG  S +E++LII++H LLGN+WSLIAGRLPGRTDNE+KNYWNTH+ +K       +  +D  TH     D   +N          DD G+  +  A P    +  A  S   +          W +G      +  L+  + PP +   + D +P +
Sbjct:   53 CRLRWINYLRPDLKRGNFSHEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKL-----TSRGIDPVTHRAINSDHAASNITISFESAQRDDKGAVFRRDAEPAKAAAAAAAISHHVDHHHRSNPQLDWGQGKPLKCPDLNLDLCISPPIHEDPMVDTKPVV 219          
The following BLAST results are available for this feature:
BLAST of DR908488 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
MYB82_ARATH5.965e-3146.78Transcription factor MYB82 OS=Arabidopsis thaliana... [more]
MYB5_ARATH2.345e-2753.33Transcription repressor MYB5 OS=Arabidopsis thalia... [more]
WER_ARATH3.387e-2680.95Transcription factor WER OS=Arabidopsis thaliana G... [more]
MYB23_ARATH7.545e-2672.97Transcription factor MYB23 OS=Arabidopsis thaliana... [more]
MYBC_MAIZE1.287e-2565.48Anthocyanin regulatory C1 protein OS=Zea mays GN=C... [more]
GL1_ARATH2.867e-2577.78Trichome differentiation protein GL1 OS=Arabidopsi... [more]
GL1_ARALY2.867e-2577.78Trichome differentiation protein GL1 OS=Arabidopsi... [more]
TT2_ARATH3.745e-2579.37Transcription factor TT2 OS=Arabidopsis thaliana G... [more]
MYB90_ARATH3.745e-2537.69Transcription factor MYB90 OS=Arabidopsis thaliana... [more]
MYB1_HORVU4.891e-2537.79Myb-related protein Hv1 OS=Hordeum vulgare GN=MYB1... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16616 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-10_E08 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908488 ID=DR908488; Name=DR908488; organism=Citrus sinensis; type=EST; length=630bp
GTTGCAGACTCAGATGGAAGAATTACCTGAGACCAAACATCAAGCGCGGT
GCCATCTCTCAACAAGAAGAAGACCTTATCATCCGAATGCATAAACTTCT
TGGCAACCGATGGTCATTGATAGCGGGTCGACTTCCTGGTCGAACCGACA
ATGAAGTGAAGAACTACTGGAATACCCATTTGAACAAGAAATGCCGTTTT
GGCAAAAGAAAAGCGACTGCCGTTGACATGGGCACCCACAACATTAATGG
TGGTGACTGCAGGGAGAATAATGACGACGGCGGCAGCAACAGCAAACTCC
CTGCCCCTCCAATGTGTCGCAATTCTCTAAACGCTTCTCAAGGATTCGAA
GAAGAGAGAAATGACTACGATGCTAATACGTGGACTGAAGGTGATTGTGG
AGGGAGCTTTAACAATTACTTAGAATGTGCGCTGATTCCTCCCAATAATT
CTACATTTGTATTTGATGATGAGCCTTTCATTGCCTATTTGGATTCCTTC
CTTGTATTCGAGACCTTTGAGTGCAACCAGTAATCGCGTTCTCTAATGTC
TCGAGTAGTGCATCTCCTCGTGCTTCAAATAAATATATCTCGAGTCGTGC
ATCTCCTCATGCTTTAAAATAAAAATGTCT
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