DR908481

Overview
NameDR908481
Unique NameDR908481
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length632
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908481_ssr17 microsatellite DR908481_ssr17:17..30. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig6356 contig Csv1_Contig6356:1..632. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR908481 vs. ExPASy Swiss-Prot
Match: IPT9_ARATH (tRNA isopentenyltransferase 9 OS=Arabidopsis thaliana GN=IPT9 PE=2 SV=1)

HSP 1 Score: 191.045 bits (484), Expect = 4.154e-48
Identity = 89/150 (59.33%), Postives = 113/150 (75.33%), Query Frame = 1 
Query:  169 DGILSEAAWLLDEGLLPNSNSATRAIGYRQAMEYLLRCRQQGGTSSTGEFYAFLAEFQKASRNFAKRQLTWFRNERIYHWLNAARPLENVLNYIITAYHDSTGTLVVPDYLQIXXXXXXXXEVSELKSYRTRNRHFISRGDCCNILDWIK 618
            +G+LSEA WLLD GLLPNSN ATRAIGYRQAMEYLL+CR+  G SS  EFYAFL +FQ ASRNFAKRQ+TWFR E +YHWLNA++PL+++L  I  AY      + +P+ L++        E SELK YR++NRHF+ R DC ++L+WI+
Sbjct:  298 NGVLSEARWLLDLGLLPNSNPATRAIGYRQAMEYLLQCRRYEGESSPREFYAFLNKFQTASRNFAKRQMTWFRCEPMYHWLNASKPLDSILQCIYDAYESEAEMVEIPESLRMSKDVRDSREASELKGYRSKNRHFVRREDCSSVLEWIR 447
The following BLAST results are available for this feature:
BLAST of DR908481 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
IPT9_ARATH4.154e-4859.33tRNA isopentenyltransferase 9 OS=Arabidopsis thali... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16609 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-56_B02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908481 ID=DR908481; Name=DR908481; organism=Citrus sinensis; type=EST; length=632bp
GTTATTAAAAAAAAAAACACACACACACACAAAAAACACCCACAACCGCT
CAAAGCCTCACACCACACTCAGCCTCTCTCACCACAGCTGGCAGCTGCTC
ACCCCACACACCAAGCCTCTCATACCACAGCTGGCAGATGCTAACAAAGC
GGCTGACTGAGGATAGCTGATGGGATTTTGTCTGAGGCCGCATGGCTTCT
TGATGAAGGTCTTCTTCCTAATTCAAACTCTGCAACTCGAGCAATTGGTT
ATAGACAAGCTATGGAATACCTCTTAAGATGCAGACAGCAAGGGGGTACA
AGTTCTACAGGGGAATTTTATGCTTTTCTGGCAGAATTTCAGAAAGCGTC
AAGAAACTTTGCCAAAAGGCAACTGACATGGTTCCGTAATGAACGTATAT
ATCACTGGCTTAATGCTGCTAGACCGCTGGAAAATGTGCTCAATTACATC
ATTACTGCATATCATGATTCAACTGGAACTTTGGTTGTGCCTGATTATCT
TCAAATAAGAAGAGATTCATCAAGCAGTCGTGAAGTCTCTGAACTTAAGT
CGTACCGCACCAGAAACAGGCATTTTATTAGCCGTGGAGATTGCTGTAAT
ATTCTAGACTGGATAAAGAGAACTCAAGGCGA
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