EY669623

Overview
NameEY669623
Unique NameEY669623
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY669623 vs. ExPASy Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.037e-16
Identity = 42/73 (57.53%), Postives = 53/73 (72.60%), Query Frame = 3 
Query:  456 PRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKTHLQKYRTARY----RPDSSEGSSEKR 662
            PR+RWTPELH +FV AV+ LGG  +ATPK VLK+M V+GLTI HVK+HLQ YR +R     +P+ S   S +R
Sbjct:   24 PRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYRGSRITLLGKPEESSSPSSRR 96
[Close]
BLAST of EY669623 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 1.175e-15
Identity = 35/57 (61.40%), Postives = 49/57 (85.96%), Query Frame = 3 
Query:  453 KPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKTHLQKYRTAR 623
            KPR+RWT ELHE FV+AV QLGG ++ATPK ++++M V+GLT+YH+K+HLQK+R  +
Sbjct:   34 KPRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90
The following BLAST results are available for this feature:
BLAST of EY669623 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
MYBF_ARATH4.037e-1657.53Putative Myb family transcription factor At1g14600... [more]
APL_ARATH1.175e-1561.40Myb family transcription factor APL OS=Arabidopsis... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C1-102-050-D02-CT.F Sweet orange leaf, infected with Xylella fastidiosa (stage 2 of 2) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY669623 ID=EY669623; Name=EY669623; organism=Citrus sinensis; type=EST; length=836bp
CCACGCGTCCGCAATTCCTCAGACTTCTCACCCTTTTTTTACCTCAATCT
TCAACATCAAGTCATTACACCACCTTTAGCAGTTCTTCCTGGTGTCCAGA
GTCACTGCCAGGTTATGTTGATTTTGCAGCAAACACCCCTGTGCAAAATA
GTCAAATGGAAGGTAGTAGTTGCAGTGGTGCCATTGTTTCGGAGGAATTC
AGTAAACGAAATGATTGGCATGAATGGGCAGACCAGCTAATTACCGATGA
TGATCCTTTGGGTTCTAGTTGGAATGAGATTCTTGCTGACACCAGTATGA
CTGAAATGGAACCAAAGATGTCATACCAGGTTCCAAAAACACCTACAAGT
ATGCCGGCACATCGGACCCAAGTTCATCAGCAGCTTCCGGCTTCATCTAC
AGAAATTCGCACTGTTGTGACCCCCTCTGCCTCAGCAAATAATGCCCCAG
CCAAGCCACGAATGCGTTGGACGCCAGAACTTCATGAGGCCTTTGTGGAG
GCTGTAAACCAACTTGGTGGTAGTGAAAGAGCTACTCCTAAGGGTGTGCT
GAAACTCATGAAAGTTGAAGGCTTGACTATTTACCATGTGAAAACCCACT
TGCAGAAATATAGGACAGCTAGGTACAGGCCAGATTCATCAGAAGGGTCC
TCCGAAAAAAGATTGACTCCTCTTGAAAAAATATCTTTTCTCAATTTGAA
ACCGGGGATTTGAGAATCCTGGAAACACTTCGATTAACAATGGAAAGTTC
AAAAAGGCGCTTGCCCCAACCCGCTTGAGAAAAAAAAAAAATTTGCCGTT
TGCAAAATAAAAAAAGCAGGGGAAATTCCTTGGAAA
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