DR908429

Overview
NameDR908429
Unique NameDR908429
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length642
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
DR908429_ssr625 microsatellite DR908429_ssr625:625..642. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig4383 contig Csv1_Contig4383:90..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR908429 vs. ExPASy Swiss-Prot
Match: DNJ10_ARATH (Chaperone protein dnaJ 10 OS=Arabidopsis thaliana GN=ATJ10 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 6.457e-12
Identity = 43/100 (43.00%), Postives = 55/100 (55.00%), Query Frame = 2 
Query:    5 RAKALKTLGKIFQRAKSNNGSEGETVLSGGVHKLNGSDSCYDASSPITSPKSTEHQEXXXXXXXXXXPYVEAPNLSDAQFGRDFPIPTAPPGAQGHSSTG 304
            RA+ LK LG+IFQRAK+   SE + + +    KLNG+   +D  +  TSPKS+E             PYVE   L D QF   FP P  PPGA  +SS+G
Sbjct:  300 RARGLKALGRIFQRAKT--ASESDPLENSEPQKLNGNGKNHDEDTS-TSPKSSEASHSTSGPQEPQSPYVEEFKLGDEQFNYYFPRPAPPPGAGKYSSSG 396
The following BLAST results are available for this feature:
BLAST of DR908429 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
DNJ10_ARATH6.457e-1243.00Chaperone protein dnaJ 10 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16557 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-46_E05 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908429 ID=DR908429; Name=DR908429; organism=Citrus sinensis; type=EST; length=642bp
CCGGCGAGCAAAAGCATTGAAAACCCTCGGCAAAATCTTCCAGAGAGCCA
AGTCAAACAATGGGAGTGAGGGTGAAACTGTGCTAAGTGGTGGAGTGCAT
AAACTGAATGGAAGTGATTCATGCTATGATGCTTCTTCTCCCATTACATC
GCCAAAATCTACAGAGCATCAAGAATCATCCCAGTCTGCTTTTGCATCTC
AGAGCCCATATGTGGAAGCCCCCAACTTGTCAGATGCTCAGTTTGGTCGT
GACTTCCCAATACCAACAGCACCACCTGGTGCTCAAGGACATTCTTCGAC
AGGCAAGGAATAAAGATGAAGAATTTGATCGATTGAGCCATGTTTGTCAA
ATATATCTATGATGTGTATGATGTTATGGATGCAGTAGGGAAAGCACTCA
AGCTTGCATTTGTTGGATAAGTCTGTACCAGTAGACGATGTTGGAAGCAC
AACCCACTTCTAAGTGATAGGATTAGCGTATTTTATTCAATCTGTGGGTC
ATGCATATACATAAAATGGAAGGTATTGCAGAAGATAGTTCTTTCTATTG
ATTCAAAATAGGCTTCCATTGGCTGCCTACTCATCATTTGAATTGAGTAA
TGTATTCCATTGCATTGATTTTCCTGTGTGTGTGTGTGTGTG
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