DR908392

Overview
NameDR908392
Unique NameDR908392
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length650
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig360 contig Csv1_Contig360:653..1302. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908392 vs. ExPASy Swiss-Prot
Match: APR1_ARATH (5'-adenylylsulfate reductase 1, chloroplastic OS=Arabidopsis thaliana GN=APR1 PE=1 SV=2)

HSP 1 Score: 196.823 bits (499), Expect = 8.034e-50
Identity = 91/124 (73.39%), Postives = 112/124 (90.32%), Query Frame = 1
Query:    1 ASEAVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 372
            +  AVADIF S+NLVTL+R G+ENL +L++R+EPW+VVLYAPWC FCQAME SY ELADKLAG+G+KV KFRADGDQKE+AKQ+LQLGSFPTIL FPK+SS+PIKYPSE+RDV+SL +F++ +R
Sbjct:  342 SKSAVADIFKSENLVTLSRQGIENLMKLENRKEPWIVVLYAPWCPFCQAMEASYDELADKLAGSGIKVAKFRADGDQKEFAKQELQLGSFPTILVFPKNSSRPIKYPSEKRDVESLTSFLNLVR 465          
BLAST of DR908392 vs. ExPASy Swiss-Prot
Match: APR3_ARATH (5'-adenylylsulfate reductase 3, chloroplastic OS=Arabidopsis thaliana GN=APR3 PE=2 SV=2)

HSP 1 Score: 187.578 bits (475), Expect = 4.874e-47
Identity = 86/121 (71.07%), Postives = 109/121 (90.08%), Query Frame = 1
Query:   10 AVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 372
            +VADIFNS+N+V L+R G+ENL +L++R+E W+VVLYAPWC FCQAME S+ ELADKL G+GVKV KFRADGDQK++AK++LQLGSFPTIL FPK+SS+PIKYPSE+RDVDSL +F++ +R
Sbjct:  338 SVADIFNSENVVNLSRQGIENLMKLENRKEAWIVVLYAPWCPFCQAMEASFDELADKLGGSGVKVAKFRADGDQKDFAKKELQLGSFPTILVFPKNSSRPIKYPSEKRDVDSLTSFLNLVR 458          
BLAST of DR908392 vs. ExPASy Swiss-Prot
Match: APR2_ARATH (5'-adenylylsulfate reductase 2, chloroplastic OS=Arabidopsis thaliana GN=APR2 PE=2 SV=2)

HSP 1 Score: 183.726 bits (465), Expect = 7.038e-46
Identity = 86/121 (71.07%), Postives = 104/121 (85.95%), Query Frame = 1
Query:   10 AVADIFNSQNLVTLNRTGMENLARLDHRQEPWLVVLYAPWCQFCQAMEGSYVELADKLAGNGVKVGKFRADGDQKEYAKQKLQLGSFPTILFFPKHSSKPIKYPSERRDVDSLMAFVDALR 372
            AV +IF S N+V L++ G+ENL +L++R+E WLVVLYAPWC FCQAME SY+ELA+KLAG GVKV KFRADG+QKE+AKQ+LQLGSFPTIL FPK + + IKYPSE RDVDSLM+FV+ LR
Sbjct:  334 AVQEIFESNNVVALSKGGVENLLKLENRKEAWLVVLYAPWCPFCQAMEASYIELAEKLAGKGVKVAKFRADGEQKEFAKQELQLGSFPTILLFPKRAPRAIKYPSEHRDVDSLMSFVNLLR 454          
The following BLAST results are available for this feature:
BLAST of DR908392 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
APR1_ARATH8.034e-5073.395'-adenylylsulfate reductase 1, chloroplastic OS=A... [more]
APR3_ARATH4.874e-4771.075'-adenylylsulfate reductase 3, chloroplastic OS=A... [more]
APR2_ARATH7.038e-4671.075'-adenylylsulfate reductase 2, chloroplastic OS=A... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16520 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-33_F02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908392 ID=DR908392; Name=DR908392; organism=Citrus sinensis; type=EST; length=650bp
GCAAGTGAAGCAGTTGCTGATATTTTCAACTCTCAGAACTTGGTGACTTT
GAATAGAACAGGAATGGAGAATTTGGCAAGACTGGATCATCGACAAGAGC
CATGGCTTGTTGTGCTGTATGCCCCATGGTGCCAATTCTGCCAGGCAATG
GAAGGATCGTATGTTGAGCTGGCTGACAAGTTAGCAGGGAATGGTGTGAA
GGTGGGCAAGTTCAGAGCAGATGGTGACCAGAAGGAATATGCAAAGCAAA
AATTGCAGCTGGGAAGCTTCCCAACAATACTATTTTTCCCTAAACACTCT
TCGAAGCCGATAAAGTACCCCTCAGAAAGGAGGGATGTAGATTCACTGAT
GGCTTTTGTGGATGCCCTCCGGTAATTGAATCATAGATTTAGCAGCAATA
CAGCCGATTGGAAAATGCAAAGTGGTAGGAGCTGGAATTCATCACAATTA
AATTTCTTTTCCCAGCCCTAGAACCCGGGGCCCTGTAATGGACCTTGGGC
GTTTTTGTGTATTTTTGGTGTAAGGGTCTTTTTTGCAATTATTTTTTCAA
ATGCGTTTCTGGAAAGATTTTCCTTCAGTCGGAGTGTGTTGTAATATTGT
TTTCAGGAGTATGAGAACAGCTGTTGGTGAAAACTTAGAAATGAATAATA
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