DR908379

Overview
NameDR908379
Unique NameDR908379
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length653
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3447 contig Csv1_Contig3447:88..740. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR908379 vs. ExPASy Swiss-Prot
Match: Y5713_ARATH (PI-PLC X domain-containing protein At5g67130 OS=Arabidopsis thaliana GN=At5g67130 PE=1 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.526e-45
Identity = 81/149 (54.36%), Postives = 108/149 (72.48%), Query Frame = 1 
Query:    1 VDDMVKQNQRLVVFTSKSSKEASEGIAYQWRYVVENQYGNEGMNDGSCQNRAESSPLNTKTRSLVLQNYFPTNPNATEACLDNSAPLTKMMNTCYDAAGKRWPNFIAVDFYQRSDGGGTPEAIDEANGRLTCGCVNIAYCKANATFGTC 447
            V DMV++N RL+VFTS ++KE  EG+AYQWRY+VEN+ G+ G+  GSC NR ES PLN+K+ SL L NYFPT P   +AC ++SAPL +M+ TC  + G R PNF+AV+FY RSDGGG  E +D  NG + CGC  ++ C+  A +G+C
Sbjct:  220 VTDMVQENHRLLVFTSVAAKEDEEGVAYQWRYMVENESGDPGVKRGSCPNRKESQPLNSKSSSLFLMNYFPTYPVEKDACKEHSAPLAEMVGTCLKSGGNRMPNFLAVNFYMRSDGGGVFEILDRMNGPVLCGCETLSACQPGAAYGSC 368
The following BLAST results are available for this feature:
BLAST of DR908379 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5713_ARATH3.526e-4554.36PI-PLC X domain-containing protein At5g67130 OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16507 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-35_C09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908379 ID=DR908379; Name=DR908379; organism=Citrus sinensis; type=EST; length=653bp
GTGGATGATATGGTTAAGCAGAATCAGCGTTTGGTGGTTTTCACCTCTAA
ATCTAGCAAGGAAGCGTCTGAGGGGATTGCCTACCAGTGGAGATATGTGG
TAGAAAATCAGTATGGAAATGAGGGGATGAATGATGGTTCATGCCAAAAC
AGGGCTGAATCTTCTCCTCTGAACACAAAAACAAGGTCACTGGTTCTCCA
GAACTACTTTCCTACTAATCCCAATGCAACAGAAGCATGCTTGGACAATT
CAGCTCCACTAACTAAGATGATGAACACTTGCTATGATGCGGCTGGTAAA
CGGTGGCCAAACTTCATTGCTGTTGATTTTTATCAGAGGAGTGACGGCGG
AGGAACACCAGAAGCCATTGATGAGGCGAATGGTCGTCTTACTTGTGGAT
GTGTCAATATAGCTTATTGCAAGGCAAATGCCACCTTTGGTACATGTGAC
ATTCCCCCAATAGCCCCCCCTCCTCCTGCTGCTGCAGGAACGACAGAAGA
TTCCCCGCAAAATCCCTCACAAGATAATACCAACAGTGCTCATAGGAATG
ACAGACCTCTTTTATTATGGTTCGTTGGGACAATTTTGCCCATAGCTCTG
GTATTATGGTGAAATTCTTGAGAATTGCTTGGTTCTCTTTAGTTTTGATT
TAT
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