DR908374

Overview
NameDR908374
Unique NameDR908374
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length654
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8107 contig Csv1_Contig8107:368..1021. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of DR908374 vs. ExPASy Swiss-Prot
Match: 5NG4_PINTA (Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 2.219e-31
Identity = 66/223 (29.60%), Postives = 114/223 (51.12%), Query Frame = 3 
Query:    6 TFVLAIIFRLEKLNWENKSSQAKSLGTFASIGGAFVVTFYKGPPL---------IGEXXXXXXXXXXXXXXXXXWILGGFFLAAEAFMNSAWFILQALILRKFAAVLIIMFYLFFFNTILSTAFALIVVSEPSDWKLGLDIGLVAVLYSAVIGTGFRVGLCTWCLSRTGPLYVSMFKPLAIVFSIVMDVVIVGDAFCLGSLIGAMIIVAGFYAVMWGKSKEEK 647
            TF++A   RLEK++   +   AK +GT A + GA ++T YKGPP+         +                   W LG  +L       S W +LQA +L+++ A L +  +  FF  I     A    ++   WK+     L  +LY+  + +G    +  WC+ R GP++V++++P+  +   +M  +I+G+ F LG + GA++I+ G Y V+WGKS+E++
Sbjct:  123 TFIMAAALRLEKVHISRRDGLAKIIGTVACVSGATIITLYKGPPITHIWRPNLEVTASYFKAFQGNDLSAKSENWTLGCIYLLGNCLAWSGWIVLQAPVLKRYPARLSVTSFTCFFGVIQFLIIAAFFETDLEHWKIHSGGELFTILYAGFVASGIAFSVQIWCIDRGGPVFVAVYQPVQTIAVAIMASIILGEQFYLGGIFGAILIIIGLYLVLWGKSEEKR 345
The following BLAST results are available for this feature:
BLAST of DR908374 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
5NG4_PINTA2.219e-3129.60Auxin-induced protein 5NG4 OS=Pinus taeda PE=2 SV=... [more]
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Properties
Property NameValue
Genbank descriptionUSDA-FP_16502 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-33_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908374 ID=DR908374; Name=DR908374; organism=Citrus sinensis; type=EST; length=654bp
CCTTTACCTTTGTGCTCGCGATCATTTTCAGATTGGAAAAGCTAAATTGG
GAAAACAAAAGCAGCCAAGCTAAGTCCTTGGGAACCTTTGCGTCGATAGG
AGGGGCATTTGTTGTGACATTTTATAAGGGCCCTCCACTTATAGGGGAAC
TTTCACACAGTGGTTCACCTCGTCGGCTTCTTCTTTCACCACAGTTAAGT
TGGATCCTAGGAGGATTCTTCCTGGCAGCTGAAGCTTTTATGAATTCAGC
ATGGTTTATTTTACAGGCATTAATCCTTAGAAAGTTCGCAGCAGTGCTTA
TCATAATGTTCTACCTATTCTTCTTCAACACCATTTTGTCTACAGCATTT
GCTCTGATTGTAGTTTCCGAGCCAAGTGATTGGAAGCTAGGACTTGACAT
AGGGCTTGTTGCTGTTTTGTACTCAGCAGTTATTGGCACTGGGTTTCGAG
TTGGCTTGTGCACATGGTGCCTGTCGAGAACTGGACCTCTTTATGTATCA
ATGTTCAAGCCCTTGGCCATTGTCTTCTCTATTGTCATGGATGTCGTCAT
TGTAGGAGACGCTTTTTGTCTTGGAAGTTTAATTGGAGCAATGATAATTG
TTGCAGGATTTTATGCAGTGATGTGGGGAAAGTCCAAAGAAGAAAAGACC
ACTG
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