DR908342

Overview
NameDR908342
Unique NameDR908342
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig5203 contig Csv1_Contig5203:21..681. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_SOLLC (Peptide methionine sulfoxide reductase (Fragment) OS=Solanum lycopersicum GN=E4 PE=3 SV=1)

HSP 1 Score: 327.02 bits (837), Expect = 5.274e-89
Identity = 152/192 (79.17%), Postives = 167/192 (86.98%), Query Frame = 2
Query:   65 TGDNNTTNPAVGPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 640
            +   +TTNPA+ PDLD PD PG EFAQF AGCFWGVELAFQRV GV KTEVGYSQGNV DPNY+L+CSGTT H E +R+QFDP VCPY+NLLS+FW RHDPTTLNRQG DVG QYRSGIYYYN+ QA+LARES+EAKQ E  D +KIVTEILPAKRFYRAEEYHQQYLEKGGGRG KQSA KGC++PIRCYG
Sbjct:    6 SSSKSTTNPALDPDLDSPDQPGLEFAQFAAGCFWGVELAFQRVGGVVKTEVGYSQGNVHDPNYKLICSGTTEHAEAIRIQFDPNVCPYSNLLSLFWSRHDPTTLNRQGNDVGKQYRSGIYYYNDAQAQLARESLEAKQKEFMD-KKIVTEILPAKRFYRAEEYHQQYLEKGGGRGCKQSAAKGCNDPIRCYG 196          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_FRAAN (Peptide methionine sulfoxide reductase OS=Fragaria ananassa PE=2 SV=2)

HSP 1 Score: 319.701 bits (818), Expect = 8.419e-87
Identity = 150/189 (79.37%), Postives = 166/189 (87.83%), Query Frame = 2
Query:   74 NNTTNPAVGPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 640
            + T NPA+  D D P+NPGHE AQF +GCFWG EL FQRVVGV KTEVGYSQG+V DPNYRLVCSGTTNH EVVRVQFDPQVCPY++LLSVFW RHDPTTLNRQG DVGTQYRSGIYYYNE Q  LA++S EAKQ E KD+R +VTEILPAKRFYRAEEYHQQYLEKGGG G+KQSA+KGC++PI+CYG
Sbjct:    4 STTNNPALDLDSDTPENPGHELAQFASGCFWGSELRFQRVVGVIKTEVGYSQGHVHDPNYRLVCSGTTNHSEVVRVQFDPQVCPYSDLLSVFWSRHDPTTLNRQGGDVGTQYRSGIYYYNEEQDCLAKKSKEAKQKEFKDKR-VVTEILPAKRFYRAEEYHQQYLEKGGGNGNKQSAQKGCNDPIKCYG 191          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_ARATH (Peptide methionine sulfoxide reductase OS=Arabidopsis thaliana GN=PMSR PE=1 SV=2)

HSP 1 Score: 260.766 bits (665), Expect = 4.641e-69
Identity = 126/190 (66.32%), Postives = 150/190 (78.95%), Query Frame = 2
Query:   71 DNNTTNPAVGPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 640
            D ++   A GPD D P + G +FAQFGAGCFWGVELA+QRV GV+KTEVGYS G V +P+Y  VC+GTT H EVVRVQ+DP+ C + +LL VFW RHDPTTLNRQG DVGTQYRSGIYYY + Q R+ARE++E +Q  +   ++IVTEILPA +FYRAE YHQQYL KGG  G +QSAEKGC +PIRCYG
Sbjct:   72 DPSSAAIAQGPDDDVPSS-GQQFAQFGAGCFWGVELAYQRVPGVTKTEVGYSHGIVHNPSYEDVCTGTTGHNEVVRVQYDPKECSFESLLDVFWNRHDPTTLNRQGGDVGTQYRSGIYYYTDEQERIAREAVEKQQKIL--NKRIVTEILPATKFYRAENYHQQYLAKGGRMGLRQSAEKGCKDPIRCYG 258          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_LACSA (Peptide methionine sulfoxide reductase OS=Lactuca sativa PE=2 SV=1)

HSP 1 Score: 258.455 bits (659), Expect = 2.303e-68
Identity = 125/183 (68.31%), Postives = 144/183 (78.69%), Query Frame = 2
Query:   92 AVGPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 640
            A GPD D P  PG +FAQFGAGCFWGVELAFQRV GVSKTEVGY+QG + +P Y  +CSGTTNH EVVRVQ+DP+ C + +LL  FW RHDPTTLNRQG DVGTQYRSGIY+Y   Q + A E+ E  Q ++   R +VTEILPAK+FYRAEEYHQQYL KGG  G +QS EKGC++PIRCYG
Sbjct:   80 AQGPDDDIPA-PGQQFAQFGAGCFWGVELAFQRVPGVSKTEVGYTQGFLHNPTYNDICSGTTNHSEVVRVQYDPKACSFDSLLDCFWERHDPTTLNRQGNDVGTQYRSGIYFYTPEQEKAAIEAKERHQKKL--NRTVVTEILPAKKFYRAEEYHQQYLAKGGRFGFRQSTEKGCNDPIRCYG 259          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_BRANA (Peptide methionine sulfoxide reductase OS=Brassica napus GN=PMSR PE=2 SV=1)

HSP 1 Score: 254.218 bits (648), Expect = 4.344e-67
Identity = 124/183 (67.76%), Postives = 144/183 (78.69%), Query Frame = 2
Query:   92 AVGPDLDRPDNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGRGSKQSAEKGCDEPIRCYG 640
            A GPD D P +PG +FAQFGAGCFWG ELA+QRV GV+KTEVGYS G V +P Y  VCS TT H E+VRVQ+DP+   + +LL VFW RHDPTTLNRQG DVGT+YRSGIY+Y + Q +LARE+ME +Q  +   RKIVTEILPA +FYRAE YHQQYL KGG  G  QSAEKGC++PIRCYG
Sbjct:   78 AQGPDDDVP-SPGQQFAQFGAGCFWGAELAYQRVPGVTKTEVGYSHGFVDNPTYEDVCSETTGHNEIVRVQYDPKEVSFESLLDVFWKRHDPTTLNRQGNDVGTRYRSGIYFYTDEQEKLAREAMEKQQKIL--NRKIVTEILPATKFYRAENYHQQYLAKGGRMGLSQSAEKGCNDPIRCYG 257          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_DICDI (Peptide methionine sulfoxide reductase OS=Dictyostelium discoideum GN=msrA PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.749e-44
Identity = 88/143 (61.54%), Postives = 100/143 (69.93%), Query Frame = 2
Query:  140 AQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYL 568
            A F AGCFW VEL FQRV GV+KT VGY+ G V +P YR VCSG T   E V +++DP+   Y  LL +FW +HDPTTLNRQG DVGTQYRSGIYY+NE Q   A  S E +QL+ KD   I TEILPA  FY AE  HQQYL
Sbjct:    4 ATFAAGCFWSVELLFQRVAGVTKTRVGYTNGTVENPTYRQVCSGKTGCAEAVELEYDPEKVTYNQLLGLFWSKHDPTTLNRQGNDVGTQYRSGIYYHNEEQKNEAIASKEKEQLKYKD--PISTEILPAGVFYPAETEHQQYL 144          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_METTH (Peptide methionine sulfoxide reductase msrA OS=Methanobacterium thermoautotrophicum GN=msrA PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 5.713e-43
Identity = 87/152 (57.24%), Postives = 104/152 (68.42%), Query Frame = 2
Query:  131 HEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGGR 586
            +E A FGAGCFWGVE AF++V GV  T VGY  G++ +P Y  VC+G T H EVV V FDP V  Y++LL VFW  HDPTTLNRQG DVG QYRS I+Y+++ Q R A ES    +   + + +IVT I PA  FY AEEYHQQYLEK   R
Sbjct:    7 YEKATFGAGCFWGVEDAFRKVDGVVSTRVGYMGGHLENPTYEDVCTGLTGHAEVVEVTFDPDVVGYSDLLDVFWSIHDPTTLNRQGPDVGEQYRSVIFYHSDEQRRAAIESRRRLEESGRFRDRIVTAIEPAGTFYEAEEYHQQYLEKNPRR 158          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_METAC (Peptide methionine sulfoxide reductase msrA OS=Methanosarcina acetivorans GN=msrA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.077e-41
Identity = 91/177 (51.41%), Postives = 104/177 (58.76%), Query Frame = 2
Query:   56 MAGTGDNNTTNPAVGPDLDRPDNPGH--EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGG 580
            M G       N       D  +NPG   E A F AGCFWG+E AF++V GV  T VGYS G+   P Y  VC+  T H E VRV FDP+V  Y NLL VFW  HDPTT NRQG DVG QYRS I+Y+NE Q   A  S E  +     +  IVTEI+P   FY AE+YHQQY EK G
Sbjct:    1 MEGNEKAEQKNATSEESTDIFENPGEGLEKATFAAGCFWGIEEAFRQVKGVVATAVGYSGGHFEKPTYEQVCTLDTGHAEAVRVIFDPKVVSYKNLLDVFWKIHDPTTKNRQGPDVGKQYRSVIFYHNEEQKAAALASKEELEKAGVFKNPIVTEIVPVSEFYMAEDYHQQYFEKKG 177          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_GEOSL (Peptide methionine sulfoxide reductase msrA OS=Geobacter sulfurreducens GN=msrA PE=3 SV=1)

HSP 1 Score: 169.859 bits (429), Expect = 1.077e-41
Identity = 87/155 (56.13%), Postives = 99/155 (63.87%), Query Frame = 2
Query:  119 DNPGHEFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGG 583
            +N   E A FGAGCFW VE  F+RV GV  T  GY  G    P Y  VCS TT H EVV V FDP    Y +LL VFW  HDPT LNRQG D+GT YRS I+Y++  Q R AR S+E +Q   +  R IVTEI+PA  F+ AEEYHQ YLEK GG
Sbjct:    3 ENTSLEKATFGAGCFWHVEEEFRRVPGVVSTLAGYMGGWKEHPTYEEVCSKTTGHAEVVEVTFDPAAVTYDHLLRVFWDCHDPTQLNRQGPDIGTNYRSVIFYHSPDQERAARASLEHEQRSGRHARPIVTEIVPAATFWWAEEYHQHYLEKRGG 157          
BLAST of DR908342 vs. ExPASy Swiss-Prot
Match: MSRA_METMJ (Peptide methionine sulfoxide reductase msrA OS=Methanoculleus marisnigri (strain ATCC 35101 / DSM 1498 / JR1) GN=msrA PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.466e-40
Identity = 84/150 (56.00%), Postives = 96/150 (64.00%), Query Frame = 2
Query:  134 EFAQFGAGCFWGVELAFQRVVGVSKTEVGYSQGNVPDPNYRLVCSGTTNHVEVVRVQFDPQVCPYTNLLSVFWGRHDPTTLNRQGADVGTQYRSGIYYYNETQARLARESMEAKQLEMKDQRKIVTEILPAKRFYRAEEYHQQYLEKGGG 583
            E A FGAGCFWGVE AF+RV GV +T VG+  G V +P Y  VC+G T H EVV+V +DP    Y  LL  FW  HDPTT NRQG D+GTQYRS I+ +   Q   AR S E      K +R IVT I PA  F+RAEEYHQQY  K GG
Sbjct:    8 ERATFGAGCFWGVEEAFRRVPGVVETAVGFMGGTVENPTYPEVCTGRTGHAEVVQVTYDPGTVSYRALLDTFWDAHDPTTPNRQGPDIGTQYRSVIFVHTPEQEAEARASKEEMDQSGKFRRPIVTAIEPAGTFWRAEEYHQQYFAKRGG 157          
The following BLAST results are available for this feature:
BLAST of DR908342 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 315
Match NameE-valueIdentityDescription
MSRA_SOLLC5.274e-8979.17Peptide methionine sulfoxide reductase (Fragment) ... [more]
MSRA_FRAAN8.419e-8779.37Peptide methionine sulfoxide reductase OS=Fragaria... [more]
MSRA_ARATH4.641e-6966.32Peptide methionine sulfoxide reductase OS=Arabidop... [more]
MSRA_LACSA2.303e-6868.31Peptide methionine sulfoxide reductase OS=Lactuca ... [more]
MSRA_BRANA4.344e-6767.76Peptide methionine sulfoxide reductase OS=Brassica... [more]
MSRA_DICDI6.749e-4461.54Peptide methionine sulfoxide reductase OS=Dictyost... [more]
MSRA_METTH5.713e-4357.24Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_METAC1.077e-4151.41Peptide methionine sulfoxide reductase msrA OS=Met... [more]
MSRA_GEOSL1.077e-4156.13Peptide methionine sulfoxide reductase msrA OS=Geo... [more]
MSRA_METMJ3.466e-4056.00Peptide methionine sulfoxide reductase msrA OS=Met... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16470 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_H07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908342 ID=DR908342; Name=DR908342; organism=Citrus sinensis; type=EST; length=661bp
TTACTTTTTCAGCGCCAGTTAGTTAGAGGAGCCTGCAGTTGCGGGAATTG
GGGAAATGGCCGGCACCGGAGATAACAACACGACGAATCCAGCTGTGGGT
CCGGATCTGGACCGACCGGACAATCCGGGTCACGAGTTCGCCCAATTCGG
AGCCGGGTGCTTCTGGGGAGTGGAGCTGGCGTTTCAGCGTGTGGTGGGCG
TATCCAAGACTGAAGTGGGGTATTCACAAGGCAACGTCCCTGATCCCAAC
TACAGACTCGTTTGCTCCGGAACCACCAATCACGTGGAGGTTGTTCGGGT
CCAGTTTGACCCGCAAGTTTGCCCCTACACCAATCTGCTCTCCGTTTTCT
GGGGCCGCCATGACCCCACCACGCTCAATCGCCAGGGAGCTGATGTGGGG
ACACAGTACAGATCAGGGATATACTATTACAATGAGACACAGGCTCGTTT
AGCCCGAGAGTCAATGGAAGCAAAGCAGTTGGAGATGAAGGATCAGAGGA
AGATTGTAACAGAGATTCTTCCTGCGAAGAGATTTTACAGAGCCGAGGAG
TACCATCAGCAGTATCTTGAAAAGGGTGGTGGCAGAGGCTCCAAGCAGTC
TGCTGAAAAGGGCTGCGATGAGCCCATCAGATGCTACGGTTGACGTTTGA
CCTTTTTATAG
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