DR908324

Overview
NameDR908324
Unique NameDR908324
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length666
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig2082 contig Csv1_Contig2082:520..1186. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908324 vs. ExPASy Swiss-Prot
Match: RN126_MOUSE (RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.761e-13
Identity = 30/70 (42.86%), Postives = 40/70 (57.14%), Query Frame = 2
Query:   59 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNVAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 268
            PA K              HV S   C VCKE + LG   R++PC H++H+ CI+PWL+  +SCPVCR+ L
Sbjct:  206 PADKEKIQALPTVPVTEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275          
BLAST of DR908324 vs. ExPASy Swiss-Prot
Match: R126A_XENLA (RING finger protein 126-A OS=Xenopus laevis GN=rnf126-A PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.219e-13
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 2
Query:  113 HVSSECHCAVCKEAFELGNVAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 268
            HV S   C VCKE + +G   R++PC H++H DCI+PWL+  ++CPVCR+ L
Sbjct:  221 HVGSGLECPVCKEDYTVGECVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of DR908324 vs. ExPASy Swiss-Prot
Match: RN126_XENTR (RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.122e-13
Identity = 26/52 (50.00%), Postives = 37/52 (71.15%), Query Frame = 2
Query:  113 HVSSECHCAVCKEAFELGNVAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 268
            HV S   C VCKE + +G   R++PC H++H DCI+PWL+  ++CPVCR+ L
Sbjct:  220 HVGSGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271          
BLAST of DR908324 vs. ExPASy Swiss-Prot
Match: RN126_HUMAN (RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.809e-12
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 2
Query:   59 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNVAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 268
            PA K              HV S   C VCK+ + LG   R++PC H++H+ CI+PWL+  +SCPVCR+ L
Sbjct:  204 PADKEKIQALPTVPVTEEHVGSGLECPVCKDDYALGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273          
BLAST of DR908324 vs. ExPASy Swiss-Prot
Match: RN126_BOVIN (RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.363e-12
Identity = 29/70 (41.43%), Postives = 40/70 (57.14%), Query Frame = 2
Query:   59 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNVAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 268
            PA K              HV S   C VCK+ + LG   R++PC H++H+ CI+PWL+  +SCPVCR+ L
Sbjct:  207 PADKEKIQALPTVPVTEEHVGSGLECPVCKDDYGLGEHVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276          
BLAST of DR908324 vs. ExPASy Swiss-Prot
Match: RN181_XENLA (E3 ubiquitin-protein ligase rnf181 OS=Xenopus laevis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 33/86 (38.37%), Postives = 42/86 (48.84%), Query Frame = 2
Query:   14 LSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNVAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 271
            L  +D T   +    PASK                 +   C VC   FE G   R++PC+H++H  CILPWL   NSCP+CR ELP
Sbjct:   39 LGAVDFTEWDQRLPPPASKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSACILPWLGKTNSCPLCRHELP 124          
BLAST of DR908324 vs. ExPASy Swiss-Prot
Match: R126B_XENLA (RING finger protein 126-B OS=Xenopus laevis GN=rnf126-B PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.031e-12
Identity = 25/52 (48.08%), Postives = 36/52 (69.23%), Query Frame = 2
Query:  113 HVSSECHCAVCKEAFELGNVAREMPCKHIYHEDCILPWLKMRNSCPVCRQEL 268
            HV     C VCKE + +G   R++PC H++H DCI+PWL+  ++CPVCR+ L
Sbjct:  221 HVGFGLECPVCKEDYTVGESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272          
BLAST of DR908324 vs. ExPASy Swiss-Prot
Match: RN181_XENTR (E3 ubiquitin-protein ligase rnf181 OS=Xenopus tropicalis GN=rnf181 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 6.875e-12
Identity = 32/86 (37.21%), Postives = 42/86 (48.84%), Query Frame = 2
Query:   14 LSQIDLTALSRPENLPASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNVAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 271
            L  +D T   +    PA+K                 +   C VC   FE G   R++PC+H++H  CILPWL   NSCP+CR ELP
Sbjct:   39 LGALDFTEWDQRLPPPAAKKVVESLPKVTVTPEQADAALKCPVCLLEFEEGETVRQLPCEHLFHSSCILPWLGKTNSCPLCRHELP 124          
BLAST of DR908324 vs. ExPASy Swiss-Prot
Match: CIP8_ARATH (E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis thaliana GN=CIP8 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 8.980e-12
Identity = 28/55 (50.91%), Postives = 35/55 (63.64%), Query Frame = 2
Query:  134 CAVCKEAFELGNVAREMPCKHIYHEDCILPWLKMRNSCPVCRQELPXXXXXXTEE 298
            CAVCK+   +G   +++PC H YH DCI+PWL  RNSCPVCR +L        EE
Sbjct:  257 CAVCKDGMVMGETGKKLPCGHCYHGDCIVPWLGTRNSCPVCRFQLETDDAEYEEE 311          
BLAST of DR908324 vs. ExPASy Swiss-Prot
Match: RN181_DANRE (E3 ubiquitin-protein ligase rnf181 OS=Danio rerio GN=rnf181 PE=2 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.532e-11
Identity = 32/71 (45.07%), Postives = 36/71 (50.70%), Query Frame = 2
Query:   59 PASKAXXXXXXXXXXXXGHVSSECHCAVCKEAFELGNVAREMPCKHIYHEDCILPWLKMRNSCPVCRQELP 271
            PA+KA                    C VC   FE     REMPCKH++H  CILPWL   NSCP+CR ELP
Sbjct:   54 PAAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLFHTGCILPWLNKTNSCPLCRLELP 124          
The following BLAST results are available for this feature:
BLAST of DR908324 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 15
Match NameE-valueIdentityDescription
RN126_MOUSE4.761e-1342.86RING finger protein 126 OS=Mus musculus GN=Rnf126 ... [more]
R126A_XENLA6.219e-1350.00RING finger protein 126-A OS=Xenopus laevis GN=rnf... [more]
RN126_XENTR8.122e-1350.00RING finger protein 126 OS=Xenopus tropicalis GN=r... [more]
RN126_HUMAN1.809e-1241.43RING finger protein 126 OS=Homo sapiens GN=RNF126 ... [more]
RN126_BOVIN2.363e-1241.43RING finger protein 126 OS=Bos taurus GN=RNF126 PE... [more]
RN181_XENLA4.031e-1238.37E3 ubiquitin-protein ligase rnf181 OS=Xenopus laev... [more]
R126B_XENLA4.031e-1248.08RING finger protein 126-B OS=Xenopus laevis GN=rnf... [more]
RN181_XENTR6.875e-1237.21E3 ubiquitin-protein ligase rnf181 OS=Xenopus trop... [more]
CIP8_ARATH8.980e-1250.91E3 ubiquitin-protein ligase CIP8 OS=Arabidopsis th... [more]
RN181_DANRE1.532e-1145.07E3 ubiquitin-protein ligase rnf181 OS=Danio rerio ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16452 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-53_E03 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908324 ID=DR908324; Name=DR908324; organism=Citrus sinensis; type=EST; length=666bp
GTTGCTTCATCAACTGTCTCAGATTGATCTAACGGCGCTATCCCGGCCGG
AGAATCTGCCGGCATCAAAAGCTTCGATCGAGTCGATGCCAAGCATAGAG
ATTTCGTCAGGCCACGTAAGTTCAGAGTGTCACTGTGCGGTATGTAAAGA
GGCGTTTGAGCTTGGAAACGTGGCGAGAGAGATGCCGTGCAAGCATATAT
ACCATGAAGATTGTATTCTCCCGTGGCTCAAAATGCGAAACTCGTGCCCC
GTTTGCAGGCAAGAGCTACCAGCAGCCGCAGCCGCAGCCACAGAAGAATC
GTCGATGGCGCTGTCTATATGGTGGCTGCCGGGAGGTGGGTTTGCAGTGG
GAAGATATGAGGGCCGGAGAGTGCTGGCCGGAGCCGCAGAGAGAGGGTTA
TCAATTGAGTTTGCTGATAATATGGATAATCAAACTAGCAGTAGCAGGGT
TTTTCCTCAAAGAAGGGTTGGTGGATTTTTTAGGGTTTTTCGTGGATTTG
GATCCATTTTCAGGAGGTTTAGGGGTACCAGTTCACGTTCTTCTCATTAT
CAAACTCATCACGTTCAACAGTCTGATCGTCCAAGTATTGTTTGAAAATT
TAATTCGGGGATGATTTTTAATCTTAGGAGTCACATATTTTAATTATATA
TTATTCATTTTTGTAT
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