DR908297

Overview
NameDR908297
Unique NameDR908297
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length671
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908297 vs. ExPASy Swiss-Prot
Match: C3H29_ARATH (Zinc finger CCCH domain-containing protein 29 OS=Arabidopsis thaliana GN=At2g40140 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.837e-21
Identity = 56/116 (48.28%), Postives = 73/116 (62.93%), Query Frame = 3
Query:   48 VSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPE------GQGLFGA---EKQQYNPWMEQMYIEQEQMV 368
            +S  P   +SN+SDW SP+GKL+WG+Q DELNKL++SASFG   NN  + +     P+    DEPDVSWVNSLVK+  PE      G  + GA   +K +   W EQMYI+ EQ +
Sbjct:  484 LSFKPAPVASNVSDWGSPNGKLEWGMQRDELNKLRRSASFGIHGNNNNSVS----RPARDYSDEPDVSWVNSLVKENAPERVNERVGNTVNGAASRDKFKLPSWAEQMYIDHEQQI 595          
BLAST of DR908297 vs. ExPASy Swiss-Prot
Match: C3H47_ARATH (Zinc finger CCCH domain-containing protein 47 OS=Arabidopsis thaliana GN=At3g55980 PE=2 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.408e-20
Identity = 54/120 (45.00%), Postives = 69/120 (57.50%), Query Frame = 3
Query:   12 RGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGA-EKQQYNPWMEQMYIEQEQMV 368
            R    ++  LS          SNLSDW SP+GKL+WG++G+ELNK+++S SFG   NN           +    DEPDVSWVNSLVKD T   +  FG  E+ +   W EQMY E+EQ V
Sbjct:  467 RSTAFAKRSLSFKPATQAAPQSNLSDWGSPNGKLEWGMKGEELNKMRRSVSFGIHGNN-------NNNAARDYRDEPDVSWVNSLVKDSTVVSERSFGMNERVRIMSWAEQMYREKEQTV 579          
BLAST of DR908297 vs. ExPASy Swiss-Prot
Match: C3H33_ORYSJ (Zinc finger CCCH domain-containing protein 33 OS=Oryza sativa subsp. japonica GN=Os05g0128200 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.725e-19
Identity = 60/123 (48.78%), Postives = 69/123 (56.10%), Query Frame = 3
Query:    3 FIDRGAVTSRAGLSMVSNPPTIRSSNLSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA 371
            FIDRG   + A  S++S   T   S LSDW SPDGKLDWGVQGDEL+KL+KSASF FR  +     T       +   EPDVSWVNSLVKD    G              +   + EQEQMVA
Sbjct:  499 FIDRGG-RAPAARSLMSPATTGAPSILSDWGSPDGKLDWGVQGDELHKLRKSASFAFRGQSAMPVAT------HAAAAEPDVSWVNSLVKDGHAAGD-------------IFAQWPEQEQMVA 601          
BLAST of DR908297 vs. ExPASy Swiss-Prot
Match: C3H66_ARATH (Zinc finger CCCH domain-containing protein 66 OS=Arabidopsis thaliana GN=At5g58620 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.154e-14
Identity = 45/97 (46.39%), Postives = 57/97 (58.76%), Query Frame = 3
Query:   81 LSDWSSPDGKLDWGVQGDELNKLKKSASFGFRSNNLTTPTTKGFTPSSSNVDEPDVSWVNSLVKDVTPEGQGLFGAEKQQYNPWMEQMYIEQEQMVA 371
            L+DW S DGKLDW VQGDEL KL+KS SF  R+  + +          + ++EPDVSWV  LVK+  P+       E +    WMEQ Y+E EQ VA
Sbjct:  524 LNDWGSLDGKLDWSVQGDELQKLRKSTSFRLRAGGMESRLPN----EGTGLEEPDVSWVEPLVKE--PQ-------ETRLAPVWMEQSYMETEQTVA 607          
The following BLAST results are available for this feature:
BLAST of DR908297 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
C3H29_ARATH2.837e-2148.28Zinc finger CCCH domain-containing protein 29 OS=A... [more]
C3H47_ARATH1.408e-2045.00Zinc finger CCCH domain-containing protein 47 OS=A... [more]
C3H33_ORYSJ7.725e-1948.78Zinc finger CCCH domain-containing protein 33 OS=O... [more]
C3H66_ARATH1.154e-1446.39Zinc finger CCCH domain-containing protein 66 OS=A... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16425 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-37_B07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908297 ID=DR908297; Name=DR908297; organism=Citrus sinensis; type=EST; length=671bp
GTTTTATTGATCGTGGAGCAGTGACCAGTCGTGCTGGTCTCAGCATGGTT
TCTAACCCTCCGACTATCAGATCCTCTAATCTATCAGATTGGAGCTCCCC
TGATGGGAAACTGGATTGGGGAGTTCAAGGAGATGAGCTGAACAAACTTA
AGAAGTCAGCTTCATTCGGGTTTCGTAGCAACAATCTAACAACCCCAACA
ACAAAAGGCTTCACTCCATCATCATCGAATGTTGATGAGCCAGATGTGTC
CTGGGTTAATTCCTTGGTGAAAGATGTTACGCCAGAAGGACAGGGATTGT
TTGGTGCGGAGAAGCAGCAATACAATCCATGGATGGAGCAAATGTACATA
GAACAGGAGCAGATGGTGGCATAATGAAAACAGCTATGTGCTCCTACCTT
ATTCTGACCAAATTAATATTCTTTGAATTCTTGTTAGATTCCACGTTTGT
AGCTAAAGTTGTAGGAGCTAAAAAAGAGAGAAGATAGTGAGGATAAATGA
GGCCCTGCTCATATCATTAATAGTTTAGCTTAAAGAAAGATTTGTTAATT
GTTTTTACACTCTTACATGGAAAGAGGTCTAAAGCCCTTTCCCTACATTG
TGTAATCTTTTGATGATTCCCACTGTAATCTACAAAATATAATACTATTT
GTTTCAATGCCAAAAAAAAAA
back to top