DR908257

Overview
NameDR908257
Unique NameDR908257
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length681
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10394 contig Csv1_Contig10394:718..1398. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of DR908257 vs. ExPASy Swiss-Prot
Match: RR19_CITSI (30S ribosomal protein S19, chloroplastic OS=Citrus sinensis GN=rps19 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 3.779e-45
Identity = 87/87 (100.00%), Postives = 87/87 (100.00%), Query Frame = 2
Query:    2 KKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 262
            KKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR
Sbjct:    6 KKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 92          
BLAST of DR908257 vs. ExPASy Swiss-Prot
Match: RR19_EUCGG (30S ribosomal protein S19, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rps19 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.199e-44
Identity = 84/87 (96.55%), Postives = 87/87 (100.00%), Query Frame = 2
Query:    2 KKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 262
            KKNPFVANHLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLPIYITDRMVGHKLGEF+PTINFRGHAKNDNRSRR
Sbjct:    6 KKNPFVANHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFSPTINFRGHAKNDNRSRR 92          
BLAST of DR908257 vs. ExPASy Swiss-Prot
Match: RR19_CARPA (30S ribosomal protein S19, chloroplastic OS=Carica papaya GN=rps19 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.178e-44
Identity = 83/87 (95.40%), Postives = 87/87 (100.00%), Query Frame = 2
Query:    2 KKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 262
            KKNPFVANHLLRKI+KLNTKAEKEIIITWSRASTIIPTM+GHTIAIHNGREHLP+YITDRMVGHKLGEFAPTINFRGHAKNDN+SRR
Sbjct:    6 KKNPFVANHLLRKIEKLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGREHLPVYITDRMVGHKLGEFAPTINFRGHAKNDNKSRR 92          
BLAST of DR908257 vs. ExPASy Swiss-Prot
Match: RR19_PLAOC (30S ribosomal protein S19, chloroplastic OS=Platanus occidentalis GN=rps19 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 9.309e-44
Identity = 82/87 (94.25%), Postives = 87/87 (100.00%), Query Frame = 2
Query:    2 KKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 262
            KKNPFVANHLLRKI+KLNTKAEKEII+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDNRSRR
Sbjct:    6 KKNPFVANHLLRKIEKLNTKAEKEIIVTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTMNFRGHAKNDNRSRR 92          
BLAST of DR908257 vs. ExPASy Swiss-Prot
Match: RR19_FAGEA (30S ribosomal protein S19, chloroplastic OS=Fagopyrum esculentum subsp. ancestrale GN=rps19 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.708e-43
Identity = 79/87 (90.80%), Postives = 86/87 (98.85%), Query Frame = 2
Query:    2 KKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 262
            KKNPFVANHLLRK+DKLNTK EKEII+TWSRASTIIPTM+GHTIAIHNGREHLP+YITDRM+GHKLGEF+PT+NFRGHAKNDNRSRR
Sbjct:    6 KKNPFVANHLLRKLDKLNTKEEKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPVYITDRMIGHKLGEFSPTLNFRGHAKNDNRSRR 92          
BLAST of DR908257 vs. ExPASy Swiss-Prot
Match: RR19_SPIOL (30S ribosomal protein S19 alpha, chloroplastic OS=Spinacia oleracea GN=rps19 PE=1 SV=4)

HSP 1 Score: 174.866 bits (442), Expect = 3.537e-43
Identity = 81/87 (93.10%), Postives = 86/87 (98.85%), Query Frame = 2
Query:    2 KKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 262
            KKNPFVANHLLRKI+KLN KAEKEII+TWSRASTIIPTM+GHTIAIHNGREHLPIYITDRMVGHKLGEFAPT+NFRGHAKNDN+SRR
Sbjct:    6 KKNPFVANHLLRKIEKLNKKAEKEIIVTWSRASTIIPTMIGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTLNFRGHAKNDNKSRR 92          
BLAST of DR908257 vs. ExPASy Swiss-Prot
Match: RR19_SOYBN (30S ribosomal protein S19, chloroplastic OS=Glycine max GN=rps19 PE=3 SV=3)

HSP 1 Score: 174.866 bits (442), Expect = 3.537e-43
Identity = 81/87 (93.10%), Postives = 87/87 (100.00%), Query Frame = 2
Query:    2 KKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 262
            KKNPFVANHLLRKI+KLNTKAEK+IIITWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEF+PT+NFRGHAKNDNRSRR
Sbjct:    6 KKNPFVANHLLRKINKLNTKAEKDIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFSPTLNFRGHAKNDNRSRR 92          
BLAST of DR908257 vs. ExPASy Swiss-Prot
Match: RR19_GOSHI (30S ribosomal protein S19, chloroplastic OS=Gossypium hirsutum GN=rps19 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.537e-43
Identity = 81/87 (93.10%), Postives = 87/87 (100.00%), Query Frame = 2
Query:    2 KKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 262
            KKNPFVANHLL+KI++LNTKAEKEIIITWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPTINFRGHAKNDN+SRR
Sbjct:    6 KKNPFVANHLLKKIERLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNKSRR 92          
BLAST of DR908257 vs. ExPASy Swiss-Prot
Match: RR19_GOSBA (30S ribosomal protein S19, chloroplastic OS=Gossypium barbadense GN=rps19 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.537e-43
Identity = 81/87 (93.10%), Postives = 87/87 (100.00%), Query Frame = 2
Query:    2 KKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 262
            KKNPFVANHLL+KI++LNTKAEKEIIITWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEFAPTINFRGHAKNDN+SRR
Sbjct:    6 KKNPFVANHLLKKIERLNTKAEKEIIITWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNKSRR 92          
BLAST of DR908257 vs. ExPASy Swiss-Prot
Match: RR19_PHAVU (30S ribosomal protein S19, chloroplastic OS=Phaseolus vulgaris GN=rps19 PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.034e-43
Identity = 80/87 (91.95%), Postives = 87/87 (100.00%), Query Frame = 2
Query:    2 KKNPFVANHLLRKIDKLNTKAEKEIIITWSRASTIIPTMVGHTIAIHNGREHLPIYITDRMVGHKLGEFAPTINFRGHAKNDNRSRR 262
            KKNPFVANHLLRKI+KLNTKAEK+II+TWSRASTIIPTM+GHTIAIHNG+EHLPIYITDRMVGHKLGEF+PT+NFRGHAKNDNRSRR
Sbjct:    6 KKNPFVANHLLRKINKLNTKAEKDIILTWSRASTIIPTMIGHTIAIHNGKEHLPIYITDRMVGHKLGEFSPTLNFRGHAKNDNRSRR 92          
The following BLAST results are available for this feature:
BLAST of DR908257 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RR19_CITSI3.779e-45100.0030S ribosomal protein S19, chloroplastic OS=Citrus... [more]
RR19_EUCGG3.199e-4496.5530S ribosomal protein S19, chloroplastic OS=Eucaly... [more]
RR19_CARPA4.178e-4495.4030S ribosomal protein S19, chloroplastic OS=Carica... [more]
RR19_PLAOC9.309e-4494.2530S ribosomal protein S19, chloroplastic OS=Platan... [more]
RR19_FAGEA2.708e-4390.8030S ribosomal protein S19, chloroplastic OS=Fagopy... [more]
RR19_SPIOL3.537e-4393.1030S ribosomal protein S19 alpha, chloroplastic OS=... [more]
RR19_SOYBN3.537e-4393.1030S ribosomal protein S19, chloroplastic OS=Glycin... [more]
RR19_GOSHI3.537e-4393.1030S ribosomal protein S19, chloroplastic OS=Gossyp... [more]
RR19_GOSBA3.537e-4393.1030S ribosomal protein S19, chloroplastic OS=Gossyp... [more]
RR19_PHAVU6.034e-4391.9530S ribosomal protein S19, chloroplastic OS=Phaseo... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16385 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-24_H02 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908257 ID=DR908257; Name=DR908257; organism=Citrus sinensis; type=EST; length=681bp
AAAAAAAAATCCTTTTGTAGCGAATCATTTATTAAGAAAAATCGATAAGC
TTAATACAAAAGCGGAAAAAGAAATAATAATAACTTGGTCCCGGGCATCT
ACCATTATACCCACAATGGTCGGCCATACTATTGCTATCCATAATGGAAG
GGAGCATTTGCCTATTTATATAACAGATCGTATGGTAGGACATAAATTGG
GAGAATTTGCGCCCACTATCAATTTCCGTGGACATGCAAAAAATGATAAT
AGATCCCGTCGTTAATAAAGTGAATATAGATTCATTGGTGAGAGGTGAAC
CTTATGATAAGGATAATAAAGAAGAAGGTAGAAGTATCTGCTTTAGGTCA
ACATATATGTATGTCTGCTCACAAAGCCCGAAGGGTAATTGATCAGATTC
CGTGGACGTTCTTACGAGGAAACCCTTATGATACTCGAACTCATGCCTTA
TCGAGCATGTTATCCCATTTTAAAATTGGTTTATTCTGCAGCAGCAAATG
GTATTCACAATCTGGGTTTCAACGAAGGAAGTTTATTCATTATTAAAGCC
GAATAGCTATGGGCGAACGACGGGAATTGAACCCGCGCATGGTGGATTCA
CAATCCACTGCCTTGATCCACTTGGCTACATCCGCCCCTCCGCTATTTAC
ACAATTTTGAAATACAAAGATCTAAAATTCA
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