DR908253

Overview
NameDR908253
Unique NameDR908253
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length683
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig328 contig Csv1_Contig328:462..1145. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908253 vs. ExPASy Swiss-Prot
Match: ORYA_ORYSJ (Oryzain alpha chain OS=Oryza sativa subsp. japonica GN=Os04g0650000 PE=1 SV=2)

HSP 1 Score: 251.906 bits (642), Expect = 2.297e-66
Identity = 106/162 (65.43%), Postives = 124/162 (76.54%), Query Frame = 3
Query:    3 GTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXXAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKP 488
            GT+LDHGV AVGYGTENG DYWIV+NSWG SWGE GY+RMERN+  + +GKCGIA+E SY                       VCDNYY+CP+S TCCC++EYG  C+AWGCCPLE ATCCDDHYSCCPH+YPICNV+ GTCLM+KD+PL V+AL+RT AKP
Sbjct:  284 GTALDHGVAAVGYGTENGKDYWIVRNSWGKSWGESGYVRMERNIKAS-SGKCGIAVEPSYPLKKGENPPNPGPTPPSPTPPPTVCDNYYTCPDSTTCCCIYEYGKYCYAWGCCPLEGATCCDDHYSCCPHEYPICNVQQGTCLMAKDSPLAVKALKRTLAKP 444          
BLAST of DR908253 vs. ExPASy Swiss-Prot
Match: RD21A_ARATH (Cysteine proteinase RD21a OS=Arabidopsis thaliana GN=RD21A PE=1 SV=1)

HSP 1 Score: 249.98 bits (637), Expect = 8.729e-66
Identity = 104/169 (61.54%), Postives = 126/169 (74.56%), Query Frame = 3
Query:    3 GTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXXAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQ 509
            GT LDHGV AVGYGTENG DYWIV+NSWG SWGE GY+RM RN+A + +GKCGIA+E SY                        CD+YY+CPESNTCCC+FEYG  CFAWGCCPLEAATCCDD+YSCCPH+YP+C++  GTCL+SK++P  V+AL+R PA P+W+ G +
Sbjct:  292 GTQLDHGVVAVGYGTENGKDYWIVRNSWGKSWGESGYLRMARNIASS-SGKCGIAIEPSYPIKNGENPPNPGPSPPSPIKPPTQCDSYYTCPESNTCCCLFEYGKYCFAWGCCPLEAATCCDDNYSCCPHEYPVCDLDQGTCLLSKNSPFSVKALKRKPATPFWSQGRK 459          
BLAST of DR908253 vs. ExPASy Swiss-Prot
Match: CYSPL_SOLLC (Low-temperature-induced cysteine proteinase (Fragment) OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 6.270e-56
Identity = 93/170 (54.71%), Postives = 115/170 (67.65%), Query Frame = 3
Query:    3 GTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXXAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAKPYWAHGNQG 512
            GT++DHGV   GYGTENG DYWIV+NSWG++  E GY+R++RNV+ + +G CG+A+E SY                        CD Y  C    TCCC+ ++  SCF+WGCCPLE ATCC+DHYSCCPHDYPICNVR GTC MSK NPLGV+A++R  A+P  A GN G
Sbjct:  173 GTAVDHGVVIAGYGTENGMDYWIVRNSWGANCRENGYLRVQRNVSSS-SGLCGLAIEPSYPVKTGPNPPKPAPSPPSPVKPPTECDEYSQCAVGTTCCCILQFRRSCFSWGCCPLEGATCCEDHYSCCPHDYPICNVRQGTCSMSKGNPLGVKAMKRILAQPIGAFGNGG 341          
BLAST of DR908253 vs. ExPASy Swiss-Prot
Match: ORYB_ORYSJ (Oryzain beta chain OS=Oryza sativa subsp. japonica GN=Os04g0670200 PE=1 SV=2)

HSP 1 Score: 213.386 bits (542), Expect = 9.054e-55
Identity = 97/167 (58.08%), Postives = 111/167 (66.47%), Query Frame = 3
Query:    3 GTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXXA------VCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRALRRTPAK 485
            GTSLDHGV AVGYGT+NG DYWIV+NSWG  WGE GY+RMERN+  T TGKCGIAM ASY                             VCD+ +SCP  +TCCC F + N C  WGCCP+E ATCC DH SCCP DYP+CN RAGTC  SK++PL V+AL+RT AK
Sbjct:  297 GTSLDHGVVAVGYGTDNGKDYWIVRNSWGPKWGESGYVRMERNINVT-TGKCGIAMMASYPTKSGANPPKPSPTPPTPPTPPPPSAPDHVCDDNFSCPAGSTCCCAFGFRNLCLVWGCCPVEGATCCKDHASCCPPDYPVCNTRAGTCSASKNSPLSVKALKRTLAK 462          
BLAST of DR908253 vs. ExPASy Swiss-Prot
Match: CYSP1_ORYSJ (Cysteine protease 1 OS=Oryza sativa subsp. japonica GN=CP1 PE=2 SV=2)

HSP 1 Score: 181.415 bits (459), Expect = 3.813e-45
Identity = 85/168 (50.60%), Postives = 98/168 (58.33%), Query Frame = 3
Query:    3 GTSLDHGVTAVGYGTE--NGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASYXXXXXXXXXXXXXXXXXXXXXXAVCDNYYSCPESNTCCCVFEYGNSCFAWGCCPLEAATCCDDHYSCCPHDYPICNVRAGTCLMSKDNPLGVRA----LRRTPAKP 488
            GT+LDHGV AVGYGT+   GA YW V+NSWG  WGE GYIRMERNV    TGKCGIAM ASY                        CD Y  CP   TCCC +   N C  WGCCP+E ATCC DH +CCP +YP+CN +A TC  SK++P  +R      R  P +P
Sbjct:  312 GTNLDHGVVAVGYGTDAATGAAYWTVRNSWGPDWGENGYIRMERNVTAR-TGKCGIAMMASYPIKKGPNPKPSPPSPAPSPPQQ--CDRYSKCPAGTTCCCNYGIRNHCIVWGCCPVEGATCCKDHSTCCPKEYPVCNAKARTCSKSKNSPYNIRTPAAMARSVPEQP 476          
BLAST of DR908253 vs. ExPASy Swiss-Prot
Match: GCP1_ARATH (Germination-specific cysteine protease 1 OS=Arabidopsis thaliana GN=GCP1 PE=2 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 3.473e-22
Identity = 45/60 (75.00%), Postives = 52/60 (86.67%), Query Frame = 3
Query:    3 GTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 182
            GT+LDH V AVGYG+ENG DYWIV+NSWG  WGE GYIRMERN+A + +GKCGIA+EASY
Sbjct:  300 GTNLDHAVVAVGYGSENGVDYWIVRNSWGPRWGEEGYIRMERNLAASKSGKCGIAVEASY 359          
BLAST of DR908253 vs. ExPASy Swiss-Prot
Match: CYSP4_BRANA (Cysteine proteinase COT44 (Fragment) OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.940e-21
Identity = 45/60 (75.00%), Postives = 53/60 (88.33%), Query Frame = 3
Query:    3 GTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 182
            GT++DH V AVGYG+ENG DYWIV+NSWG+ WGE GYIRMERNVA + +GKCGIA+EASY
Sbjct:  255 GTNMDHAVVAVGYGSENGVDYWIVRNSWGTRWGEDGYIRMERNVA-SKSGKCGIAIEASY 313          
BLAST of DR908253 vs. ExPASy Swiss-Prot
Match: CPR4_ARATH (Probable cysteine proteinase At4g11320 OS=Arabidopsis thaliana GN=At4g11320 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.851e-18
Identity = 41/60 (68.33%), Postives = 47/60 (78.33%), Query Frame = 3
Query:    3 GTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 182
            GT+L+HGV  VGYGTENG DYWIVKNS G +WGE GY++M RN+A    G CGIAM ASY
Sbjct:  299 GTNLNHGVVVVGYGTENGRDYWIVKNSRGDTWGEAGYMKMARNIANP-RGLCGIAMRASY 357          
BLAST of DR908253 vs. ExPASy Swiss-Prot
Match: CYSP_HEMSP (Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN102 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.156e-17
Identity = 42/61 (68.85%), Postives = 46/61 (75.41%), Query Frame = 3
Query:    3 GTSLDHGVTAVGYG-TENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 182
            GT LDHGV  VGYG T +G  YWIVKNSWG  WGE GYIRM+R ++    GKCGIAMEASY
Sbjct:  284 GTELDHGVAIVGYGATRDGTKYWIVKNSWGEEWGESGYIRMQRGISDK-RGKCGIAMEASY 343          
BLAST of DR908253 vs. ExPASy Swiss-Prot
Match: CPR3_ARATH (Probable cysteine proteinase At4g11310 OS=Arabidopsis thaliana GN=At4g11310 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.575e-17
Identity = 40/60 (66.67%), Postives = 47/60 (78.33%), Query Frame = 3
Query:    3 GTSLDHGVTAVGYGTENGADYWIVKNSWGSSWGEGGYIRMERNVAGTLTGKCGIAMEASY 182
            GT+L+HGV  VGYGTENG DYW+VKNS G +WGE GY++M RN+A    G CGIAM ASY
Sbjct:  292 GTNLNHGVVVVGYGTENGRDYWLVKNSRGITWGEAGYMKMARNIANP-RGLCGIAMRASY 350          
The following BLAST results are available for this feature:
BLAST of DR908253 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
ORYA_ORYSJ2.297e-6665.43Oryzain alpha chain OS=Oryza sativa subsp. japonic... [more]
RD21A_ARATH8.729e-6661.54Cysteine proteinase RD21a OS=Arabidopsis thaliana ... [more]
CYSPL_SOLLC6.270e-5654.71Low-temperature-induced cysteine proteinase (Fragm... [more]
ORYB_ORYSJ9.054e-5558.08Oryzain beta chain OS=Oryza sativa subsp. japonica... [more]
CYSP1_ORYSJ3.813e-4550.60Cysteine protease 1 OS=Oryza sativa subsp. japonic... [more]
GCP1_ARATH3.473e-2275.00Germination-specific cysteine protease 1 OS=Arabid... [more]
CYSP4_BRANA2.940e-2175.00Cysteine proteinase COT44 (Fragment) OS=Brassica n... [more]
CPR4_ARATH8.851e-1868.33Probable cysteine proteinase At4g11320 OS=Arabidop... [more]
CYSP_HEMSP1.156e-1768.85Thiol protease SEN102 OS=Hemerocallis sp. GN=SEN10... [more]
CPR3_ARATH2.575e-1766.67Probable cysteine proteinase At4g11310 OS=Arabidop... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16381 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-46_B11 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908253 ID=DR908253; Name=DR908253; organism=Citrus sinensis; type=EST; length=683bp
GTGGGACATCTCTGGACCATGGTGTTACTGCTGTTGGATATGGCACAGAA
AATGGAGCTGATTACTGGATTGTGAAGAATTCATGGGGCAGTAGCTGGGG
AGAGGGTGGCTATATTAGGATGGAGCGTAACGTGGCTGGCACTCTCACGG
GCAAGTGTGGAATTGCCATGGAGGCCTCATATCCCATAAAGAAAGGCCAA
AATCCTCCCAACCCCGGACCGTCTCCTCCATCTCCAACAAAGCCTCCTGC
TGTGTGTGACAATTATTACTCTTGCCCTGAGAGCAACACTTGCTGCTGTG
TCTTTGAGTATGGTAACTCTTGCTTTGCATGGGGATGCTGCCCGCTTGAG
GCTGCCACCTGCTGTGATGACCACTATAGCTGCTGCCCACATGACTATCC
CATCTGTAATGTTCGTGCTGGGACCTGCTTGATGAGCAAGGACAACCCAT
TGGGAGTGAGGGCATTGCGACGCACCCCTGCTAAACCTTACTGGGCTCAT
GGAAATCAAGGTGGAAGTAGCAGTGCTTAATTATAGTTGGCACTGTAAGA
GCAGTGGAAGGCCGAAGGGAGGATGAAGATATTCGTGCTTGTGAATGAGT
TTCTCCCCGGCCTTATTCATTTTACTGCATTTCATTTCAAACGTTAATGT
ACCGGCAGGTGGATGGTCTGTTAAATATTTATT
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