DR908249

Overview
NameDR908249
Unique NameDR908249
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3161 contig Csv1_Contig3161:45..731. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908249 vs. ExPASy Swiss-Prot
Match: MEMO1_RAT (Protein MEMO1 OS=Rattus norvegicus GN=Memo1 PE=2 SV=1)

HSP 1 Score: 188.348 bits (477), Expect = 3.119e-47
Identity = 93/174 (53.45%), Postives = 115/174 (66.09%), Query Frame = 3
Query:    3 EVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHP--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHM---LGNCSTKIKIKFLRYEQSSQCKT 509
            ++  EL  TG FE M +  DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F VSSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGRHPI V L+    L      +   FL Y QSSQC++
Sbjct:  108 KIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGRHPIGVLLNAITELQKSGMNMSFSFLNYAQSSQCRS 281          
BLAST of DR908249 vs. ExPASy Swiss-Prot
Match: MEMO1_MOUSE (Protein MEMO1 OS=Mus musculus GN=Memo1 PE=1 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.320e-47
Identity = 93/174 (53.45%), Postives = 115/174 (66.09%), Query Frame = 3
Query:    3 EVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHP--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHM---LGNCSTKIKIKFLRYEQSSQCKT 509
            ++  EL  TG FE M +  DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F VSSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGRHPI V L+    L      +   FL Y QSSQC++
Sbjct:  108 KIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGRHPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCRS 281          
BLAST of DR908249 vs. ExPASy Swiss-Prot
Match: MEMO1_MACFA (Protein MEMO1 OS=Macaca fascicularis GN=MEMO1 PE=2 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.948e-47
Identity = 93/173 (53.76%), Postives = 114/173 (65.90%), Query Frame = 3
Query:    3 EVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHP--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHM---LGNCSTKIKIKFLRYEQSSQCK 506
            ++  EL  TG FE M +  DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F VSSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGRHPI V L+    L      +   FL Y QSSQC+
Sbjct:  108 KIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGRHPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCR 280          
BLAST of DR908249 vs. ExPASy Swiss-Prot
Match: MEMO1_HUMAN (Protein MEMO1 OS=Homo sapiens GN=MEMO1 PE=1 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 6.948e-47
Identity = 93/173 (53.76%), Postives = 114/173 (65.90%), Query Frame = 3
Query:    3 EVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHP--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHM---LGNCSTKIKIKFLRYEQSSQCK 506
            ++  EL  TG FE M +  DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ DPSN F VSSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGRHPI V L+    L      +   FL Y QSSQC+
Sbjct:  108 KIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLADPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGRHPIGVLLNAITELQKNGMNMSFSFLNYAQSSQCR 280          
BLAST of DR908249 vs. ExPASy Swiss-Prot
Match: MEMO1_XENLA (Protein MEMO1 OS=Xenopus laevis GN=memo1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 1.548e-46
Identity = 92/174 (52.87%), Postives = 115/174 (66.09%), Query Frame = 3
Query:    3 EVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHP--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHM---LGNCSTKIKIKFLRYEQSSQCKT 509
            +V  EL  TG FE M +  DE EHS+EMHLPY AK  E H   + IVP+LVGA++   E  +G++F+KY+ DP+N F +SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP  F  YL +Y NTICGRHPI V L+    L      +   FL Y QSSQC++
Sbjct:  108 KVYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDDLTIVPVLVGALSESKEQEFGKVFSKYLADPTNLFVISSDFCHWGQRFRYTYYDESQGEIYRSIENLDKMGMSIIEQLDPVQFSNYLKKYHNTICGRHPIGVLLNAATELQKNGVNMSFSFLNYAQSSQCRS 281          
BLAST of DR908249 vs. ExPASy Swiss-Prot
Match: MEMO1_XENTR (Protein MEMO1 OS=Xenopus tropicalis GN=memo1 PE=2 SV=1)

HSP 1 Score: 185.652 bits (470), Expect = 2.022e-46
Identity = 92/174 (52.87%), Postives = 115/174 (66.09%), Query Frame = 3
Query:    3 EVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHP--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHM---LGNCSTKIKIKFLRYEQSSQCKT 509
            +V  +L  TG FE M +  DE EHS+EMHLPY AK  E H   + IVP+LVGA++   E  +G+LF+KY+ DP+N F +SSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP  F  YL +Y NTICGRHPI V L+    L      +   FL Y QSSQC++
Sbjct:  108 KVYGDLWKTGMFERMSLQTDEDEHSIEMHLPYTAKTMESHKDDLTIVPVLVGALSESKEQEFGKLFSKYLADPTNLFVISSDFCHWGQRFRYTYYDESQGEIYRSIENLDKMGMGIIEQLDPVQFSNYLKKYHNTICGRHPIGVLLNAATELQKNGVNMSFSFLNYAQSSQCRS 281          
BLAST of DR908249 vs. ExPASy Swiss-Prot
Match: MEMO1_DANRE (Protein MEMO1 OS=Danio rerio GN=memo1 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 3.448e-46
Identity = 91/173 (52.60%), Postives = 112/173 (64.74%), Query Frame = 3
Query:    3 EVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHP--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHMLGNCSTK---IKIKFLRYEQSSQCK 506
            +V  +L  TG FE M +  DE EHS+EMHLPY AK  E H     IVP+LVGA++   E  YG+L +KY+ DPSN F +S DFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGRHPI V L+ +         +   FL Y QSSQC+
Sbjct:  108 KVYADLWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMENHKDEFSIVPVLVGALSGSKEQEYGKLLSKYLADPSNLFIISPDFCHWGQRFRYTYYDESQGEIYRSIEHLDKMGMGIIEQLDPISFSNYLKKYHNTICGRHPIGVLLNAVAELKKNGIDMNFSFLNYAQSSQCR 280          
BLAST of DR908249 vs. ExPASy Swiss-Prot
Match: MEMO1_BOVIN (Protein MEMO1 OS=Bos taurus GN=MEMO1 PE=2 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 2.092e-43
Identity = 86/168 (51.19%), Postives = 112/168 (66.67%), Query Frame = 3
Query:    3 EVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHP--IKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHMLGNCSTK-IKIKFLRYEQSS 497
            ++  EL  TG FE M +  DE EHS+EMHLPY AK  E H     I+P+LVGA++   E  +G+LF+KY+ +PSN F VSSDFCHWG RF Y +YD+  G I++SIE LDKMGM IIE  DP +F  YL +Y NTICGRHPI V L+ +       + + F  ++Q+S
Sbjct:  108 KIYGELWKTGMFERMSLQTDEDEHSIEMHLPYTAKAMESHKDEFTIIPVLVGALSESKEQEFGKLFSKYLAEPSNLFVVSSDFCHWGQRFRYSYYDESQGEIYRSIEHLDKMGMSIIEQLDPVSFSNYLKKYHNTICGRHPIGVLLNAITELQKNGMNMSFSFFQQAS 275          
BLAST of DR908249 vs. ExPASy Swiss-Prot
Match: MEMO1_DICDI (Protein MEMO1 homolog OS=Dictyostelium discoideum GN=memo1 PE=3 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.557e-41
Identity = 86/168 (51.19%), Postives = 109/168 (64.88%), Query Frame = 3
Query:    3 EVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGH--PIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGVIHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFLHMLGNCSTKIKIKFLRYEQSSQ 500
            +   +L  TG F      VDE EHS+E+ LPY+AKV E     + IVPI+VG+++ + E +YG++ A Y DDP NFF +SSDFCHWG RF Y  Y+ K   I+K IE LD+ GM+IIE+GDP  F KYL E  NTICGR PI+V L +  N   K  I  L YEQSS+
Sbjct:  103 DTTNKLFDTGSFIWNTKSVDEDEHSLELQLPYIAKVAEKRLLELSIVPIMVGSLSIDLEELYGKILAPYFDDPENFFVISSDFCHWGERFGYTRYENKEVPIYKYIEELDRKGMEIIESGDPVQFSKYLKETKNTICGRCPIAVMLWITKNSQFKYNISSLYYEQSSK 270          
BLAST of DR908249 vs. ExPASy Swiss-Prot
Match: TG253_CAEEL (UPF0103 protein tag-253 OS=Caenorhabditis elegans GN=tag-253 PE=2 SV=3)

HSP 1 Score: 152.525 bits (384), Expect = 1.897e-36
Identity = 76/174 (43.68%), Postives = 112/174 (64.37%), Query Frame = 3
Query:    3 EVIEELKATGKFELMDICVDEAEHSMEMHLPYLAKVFEGHPIKIVPILVGAVNAENEAMYGRLFAKYVDDPSNFFSVSSDFCHWGSRFNYMHYDKKHGV-IHKSIEALDKMGMDIIETGDPDAFKKYLLEYDNTICGRHPISVFL----HMLGNCSTKIKIKFLRYEQSSQCKT 509
            ++ EEL+AT  F+LMD   +E+EHS+EM LP++AKV       IVP+LVG++    +  YG +FA Y++DP N F +SSDFCHWG RF++  YD+   + I++ I  +DK GM  IET +P AF  YL +  NTICGR+PI + L    H   + +   + +FL Y QS++ ++
Sbjct:  159 KINEELRATRHFDLMDRRDEESEHSIEMQLPFIAKVMGSKRYTIVPVLVGSLPGSRQQTYGNIFAHYMEDPRNLFVISSDFCHWGERFSFSPYDRHSSIPIYEQITNMDKQGMSAIETLNPAAFNDYLKKTQNTICGRNPILIMLQAAEHFRISNNHTHEFRFLHYTQSNKVRS 332          
The following BLAST results are available for this feature:
BLAST of DR908249 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
MEMO1_RAT3.119e-4753.45Protein MEMO1 OS=Rattus norvegicus GN=Memo1 PE=2 S... [more]
MEMO1_MOUSE5.320e-4753.45Protein MEMO1 OS=Mus musculus GN=Memo1 PE=1 SV=1[more]
MEMO1_MACFA6.948e-4753.76Protein MEMO1 OS=Macaca fascicularis GN=MEMO1 PE=2... [more]
MEMO1_HUMAN6.948e-4753.76Protein MEMO1 OS=Homo sapiens GN=MEMO1 PE=1 SV=1[more]
MEMO1_XENLA1.548e-4652.87Protein MEMO1 OS=Xenopus laevis GN=memo1 PE=2 SV=1[more]
MEMO1_XENTR2.022e-4652.87Protein MEMO1 OS=Xenopus tropicalis GN=memo1 PE=2 ... [more]
MEMO1_DANRE3.448e-4652.60Protein MEMO1 OS=Danio rerio GN=memo1 PE=2 SV=1[more]
MEMO1_BOVIN2.092e-4351.19Protein MEMO1 OS=Bos taurus GN=MEMO1 PE=2 SV=1[more]
MEMO1_DICDI2.557e-4151.19Protein MEMO1 homolog OS=Dictyostelium discoideum ... [more]
TG253_CAEEL1.897e-3643.68UPF0103 protein tag-253 OS=Caenorhabditis elegans ... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16377 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-46_A07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908249 ID=DR908249; Name=DR908249; organism=Citrus sinensis; type=EST; length=684bp
TGGAAGTCATCGAGGAGCTAAAAGCTACAGGAAAATTTGAATTGATGGAT
ATTTGCGTAGATGAGGCTGAACATAGCATGGAAATGCACTTGCCATACCT
TGCAAAAGTATTTGAGGGGCACCCGATAAAAATTGTGCCCATTCTTGTCG
GTGCTGTCAATGCTGAAAATGAAGCAATGTATGGAAGGTTGTTTGCCAAG
TATGTAGATGATCCCAGCAATTTCTTCTCCGTGTCCTCAGATTTTTGTCA
CTGGGGTTCTCGGTTCAATTACATGCACTATGACAAGAAACATGGAGTCA
TTCACAAATCTATTGAAGCCTTGGACAAAATGGGCATGGATATAATAGAA
ACTGGAGATCCTGACGCATTCAAAAAGTATTTATTGGAGTATGACAACAC
AATTTGTGGTCGGCATCCAATTAGTGTTTTTCTCCATATGTTGGGGAACT
GCTCCACAAAGATAAAAATCAAATTTCTTCGATATGAACAATCAAGCCAA
TGCAAAACGAAGAGAGATAGTAGTGTAAGTTATGCATCTGCAGCAGCTAA
GGTGGATGCTTGAAGCTGTGAAAATATTATGCTGGATTTACTGGTGTGGG
AAACAAATTGTGTACTGTGAATTGAATGTCCCGTTTGACCTGCATTGCTG
GATCATATCACATCACACTGTGGATTATTTGTAC
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