DR908239

Overview
NameDR908239
Unique NameDR908239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length549
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7965 contig Csv1_Contig7965:1..549. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908239 vs. ExPASy Swiss-Prot
Match: ISCU_MOUSE (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus musculus GN=Iscu PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.746e-28
Identity = 63/79 (79.75%), Postives = 71/79 (89.87%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            DEK G+IVDA FKTFGCGSAIASSS+ATEWVKGK +EE L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+
Sbjct:   81 DEK-GKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 158          
BLAST of DR908239 vs. ExPASy Swiss-Prot
Match: ISCU_HUMAN (Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo sapiens GN=ISCU PE=1 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 2.746e-28
Identity = 63/79 (79.75%), Postives = 71/79 (89.87%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            DEK G+IVDA FKTFGCGSAIASSS+ATEWVKGK +EE L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+
Sbjct:   80 DEK-GKIVDARFKTFGCGSAIASSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 157          
BLAST of DR908239 vs. ExPASy Swiss-Prot
Match: ISU1_DEBHA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Debaryomyces hansenii GN=ISU1 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 2.570e-26
Identity = 59/80 (73.75%), Postives = 67/80 (83.75%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRT 240
            D+++G I D  FKTFGCGSAIASSS  TE VKGK +EE + IKNT IAK LSLPPVKLHCSMLAEDAIK+AVKDY +KR+
Sbjct:   82 DDETGVIKDVKFKTFGCGSAIASSSYLTELVKGKTIEEAVKIKNTAIAKELSLPPVKLHCSMLAEDAIKSAVKDYRSKRS 161          
BLAST of DR908239 vs. ExPASy Swiss-Prot
Match: NIFU_RICPR (NifU-like protein OS=Rickettsia prowazekii GN=nifU PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.357e-26
Identity = 56/73 (76.71%), Postives = 63/73 (86.30%), Query Frame = 1
Query:   19 IVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            I DA FKTFGCGSAIASSS+ TEW+KGK +E+   IKNTEIAK LSLPPVKLHCS+LAEDAIKAA+ DY+ KR
Sbjct:   53 ITDAKFKTFGCGSAIASSSLVTEWIKGKSVEDAKEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIADYKQKR 125          
BLAST of DR908239 vs. ExPASy Swiss-Prot
Match: NIFU_BUCAI (NifU-like protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=nifU PE=3 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 1.276e-25
Identity = 54/77 (70.13%), Postives = 64/77 (83.12%), Query Frame = 1
Query:    7 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            + G I DACFKT+GCGSAIASSS+ TEWVKGK +EE  SIKNT I + L LPPVK+HCS+LAEDAIKAA+ DY+ K+
Sbjct:   49 EKGIIEDACFKTYGCGSAIASSSLVTEWVKGKSIEEAESIKNTTIVEELDLPPVKIHCSILAEDAIKAAISDYKRKK 125          
BLAST of DR908239 vs. ExPASy Swiss-Prot
Match: ISU2_YEAST (Iron sulfur cluster assembly protein 2, mitochondrial OS=Saccharomyces cerevisiae GN=ISU2 PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.666e-25
Identity = 57/79 (72.15%), Postives = 66/79 (83.54%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            ++KSG I +  FKTFGCGSAIASSS  TE V+G  ++E + IKNTEIAK LSLPPVKLHCSMLAEDAIKAA+KDY+ KR
Sbjct:   72 NDKSGIIENVKFKTFGCGSAIASSSYMTELVRGMSLDEAVKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKTKR 150          
BLAST of DR908239 vs. ExPASy Swiss-Prot
Match: ISU1_KLULA (Iron sulfur cluster assembly protein 1, mitochondrial OS=Kluyveromyces lactis GN=ISU1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 2.176e-25
Identity = 56/79 (70.89%), Postives = 67/79 (84.81%), Query Frame = 1
Query:    1 DEKSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            ++++G I +  FKTFGCGSAIASSS  TE V+GK +E+   IKNTEIA+ LSLPPVKLHCSMLAEDAIKAA+KDY+AKR
Sbjct:   96 NDETGVIENVKFKTFGCGSAIASSSYMTELVRGKTLEDAAKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIKDYQAKR 174          
BLAST of DR908239 vs. ExPASy Swiss-Prot
Match: NIFU_BUCBP (NifU-like protein OS=Buchnera aphidicola subsp. Baizongia pistaciae GN=nifU PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 4.847e-25
Identity = 53/76 (69.74%), Postives = 64/76 (84.21%), Query Frame = 1
Query:    7 KSGQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 234
            K+G I DACFKT+GCGSAIASSS+ TEW+KGK + E  +IKNT IA+ L LPPVK+HCS+LAEDAIKAA+ DY+ K
Sbjct:   49 KNGIIQDACFKTYGCGSAIASSSLVTEWIKGKSLIEAENIKNTNIAEELDLPPVKIHCSILAEDAIKAAITDYKNK 124          
BLAST of DR908239 vs. ExPASy Swiss-Prot
Match: NIFU_SHIFL (NifU-like protein OS=Shigella flexneri GN=nifU PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.330e-25
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 1
Query:   13 GQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            G I DA FKT+GCGSAIASSS+ TEWVKGK ++E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   51 GIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
BLAST of DR908239 vs. ExPASy Swiss-Prot
Match: NIFU_ECOLI (NifU-like protein OS=Escherichia coli (strain K12) GN=nifU PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 6.330e-25
Identity = 53/75 (70.67%), Postives = 65/75 (86.67%), Query Frame = 1
Query:   13 GQIVDACFKTFGCGSAIASSSVATEWVKGKQMEEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 237
            G I DA FKT+GCGSAIASSS+ TEWVKGK ++E  +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct:   51 GIIEDARFKTYGCGSAIASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125          
The following BLAST results are available for this feature:
BLAST of DR908239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 27
Match NameE-valueIdentityDescription
ISCU_MOUSE2.746e-2879.75Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISCU_HUMAN2.746e-2879.75Iron-sulfur cluster assembly enzyme ISCU, mitochon... [more]
ISU1_DEBHA2.570e-2673.75Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_RICPR3.357e-2676.71NifU-like protein OS=Rickettsia prowazekii GN=nifU... [more]
NIFU_BUCAI1.276e-2570.13NifU-like protein OS=Buchnera aphidicola subsp. Ac... [more]
ISU2_YEAST1.666e-2572.15Iron sulfur cluster assembly protein 2, mitochondr... [more]
ISU1_KLULA2.176e-2570.89Iron sulfur cluster assembly protein 1, mitochondr... [more]
NIFU_BUCBP4.847e-2569.74NifU-like protein OS=Buchnera aphidicola subsp. Ba... [more]
NIFU_SHIFL6.330e-2570.67NifU-like protein OS=Shigella flexneri GN=nifU PE=... [more]
NIFU_ECOLI6.330e-2570.67NifU-like protein OS=Escherichia coli (strain K12)... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16367 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-36_G04 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908239 ID=DR908239; Name=DR908239; organism=Citrus sinensis; type=EST; length=549bp
GATGAAAAGAGTGGTCAGATCGTCGACGCCTGCTTCAAGACCTTCGGTTG
TGGCTCTGCCATCGCCTCATCATCTGTTGCCACAGAATGGGTGAAAGGGA
AGCAGATGGAGGAAGTTTTGTCCATTAAGAACACGGAAATTGCAAAACAT
CTTTCTCTACCACCGGTTAAGCTGCATTGTAGCATGCTTGCTGAAGATGC
TATCAAGGCTGCTGTAAAAGATTACGAAGCTAAACGTACCAAATCAAGTG
CCGCCTCAGAGGCAGCTCCTGCAGAGAAGGCTGCCGATGCTTGAAGATGT
TGATGAAAACATTTGAAAAATGATGTTAATGTGCTACTTGTGGAAGGTGT
ATCAGGGACACTGCAAATCCTAATATTGATGGTACATGGCAGGTGGTGCA
AGGGTTAATGGTTATTAATTAGAACTGCCATTTTGTACATTATGAATCTG
AATTGTGCGTGTGTAACTGAACCACTGAGAGTGTGATCCTCTGCATGGTT
CTAAGTTTGTTTTAATTATGTTGTTCAAATTTAAAAAAAAAAAAAAAAA
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