DR908233

Overview
NameDR908233
Unique NameDR908233
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length688
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8769 contig Csv1_Contig8769:170..857. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of DR908233 vs. ExPASy Swiss-Prot
Match: TIC_ARATH (Protein TIME FOR COFFEE OS=Arabidopsis thaliana GN=TIC PE=1 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.252e-11
Identity = 40/73 (54.79%), Postives = 44/73 (60.27%), Query Frame = 2 
Query:    5 TSDPAKAVAAVS---NMKGGGLPSQGLVHAGQFATTQSSGKQHQLVPPGFPYVHAVPTAVQVKPAEQKQPAGE 214
            TSDPAKA+AA S   NMKGGG                   +QHQL PPGF  VHAV +AVQVKP +QKQ AGE
Sbjct: 1492 TSDPAKAIAAASAANNMKGGG--------------GMGKTQQHQLGPPGFTNVHAVSSAVQVKPVDQKQQAGE 1550
The following BLAST results are available for this feature:
BLAST of DR908233 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
TIC_ARATH6.252e-1154.79Protein TIME FOR COFFEE OS=Arabidopsis thaliana GN... [more]
back to top
Properties
Property NameValue
Genbank descriptionUSDA-FP_16361 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-39_C07 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908233 ID=DR908233; Name=DR908233; organism=Citrus sinensis; type=EST; length=688bp
GGGCACTTCTGATCCGGCCAAGGCTGTAGCTGCAGTTAGCAATATGAAAG
GTGGTGGCTTGCCTTCACAGGGTCTTGTCCATGCTGGTCAATTTGCTACT
ACACAGTCTTCTGGGAAGCAACATCAGCTTGTTCCTCCTGGCTTCCCATA
TGTTCATGCAGTTCCCACTGCGGTCCAGGTGAAACCAGCGGAGCAGAAAC
AACCCGCTGGTGAGTAAGAATTGTGCCCTGGTGCCTTAAGCTGCAACACT
CATATAGGGAACAAAAAAATACATAGTGCCTAGTGAGATGAATTAGATTG
CGGATGTATAAATTTTGAAGGGAGAATAGATTTTATTGCCCAAGTAAATT
ACAGAATCTGCATGCTCTCTGGCCGCATGGAAAGGATAAATGAGGATCCA
TTGATGAAAGCACAATCCGAAGACTCAGCATTTGGGTTGCGGACCCACAA
TTTTGGAAAGGAAGTTTGAAACAGTGGGGGAAAATGATTCTTTGTGAAAT
GTTCTTGAAATGTGTATTCAGCTTTGTACACTTGTGTTTATAATCTGACA
AAGTTGATCTTGAAGTCTAATTAATATTTTATTGGTTTCGGTGGTGGGAA
AGGATAAGCAATGAAAGAGAAGGTGGTCTCGATAAATTTTTTTTGTAGGG
CAAAGGAGGAAAGAGGGGCAAAATGAAAGAAGAAGATA
back to top