DR908180

Overview
NameDR908180
Unique NameDR908180
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length703
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4785 contig Csv1_Contig4785:547..1249. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of DR908180 vs. ExPASy Swiss-Prot
Match: RECA3_ARATH (DNA repair protein recA homolog 3, mitochondrial OS=Arabidopsis thaliana GN=At2g19490 PE=2 SV=2)

HSP 1 Score: 314.694 bits (805), Expect = 3.063e-85
Identity = 160/208 (76.92%), Postives = 181/208 (87.02%), Query Frame = 2
Query:    2 LLAQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFG-FGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFTSKAGAMFTYNDRNFRGKEAFKQFLVENESVREELV 622
            LL+QPDCGEQALSLVDTLIRSG            LVPKGEL+GEMGDAHMAMQARLMSQALRKLSHSLSLSQT+LIFINQVR+KLSTFG FGGPTEVTCGGNALKFYAS+RLNIKRIGL+KKGEET GSQ++VKIVKNKLAPPF+TAQFELEFGKGI + +EIIDL++KHKF +K G  +  N +N+ GKEA K+FL +NES +EEL+
Sbjct:  168 LLSQPDCGEQALSLVDTLIRSGSVDVIVVDSVAALVPKGELEGEMGDAHMAMQARLMSQALRKLSHSLSLSQTLLIFINQVRSKLSTFGGFGGPTEVTCGGNALKFYASMRLNIKRIGLIKKGEETTGSQVSVKIVKNKLAPPFRTAQFELEFGKGICKITEIIDLSIKHKFIAKNGTFYNLNGKNYHGKEALKRFLKQNESDQEELM 375          
BLAST of DR908180 vs. ExPASy Swiss-Prot
Match: RECA_COXBU (Protein recA OS=Coxiella burnetii GN=recA PE=3 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 4.609e-57
Identity = 111/207 (53.62%), Postives = 152/207 (73.43%), Query Frame = 2
Query:    2 LLAQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFTSKAGAMFTYN-DRNFRGKEAFKQFLVENESVREEL 619
            L++QPD GEQAL + D L+RSG            L PK E++G+MGD+HM +QARLMSQALRKL+ ++  S T++IFINQ+R K+    FG P E T GGNALKFY+SVRL+I+RIG +KKGEE +GS+  VK+VKNK+APPF+  +F++ +G GISRESE+IDL +K++   KAGA ++YN +R  +GKE  +QF +EN  +  E+
Sbjct:  114 LVSQPDTGEQALEITDMLVRSGAVDLIVIDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKKSNTLVIFINQIRMKIGVM-FGNP-ETTTGGNALKFYSSVRLDIRRIGAIKKGEEILGSETRVKVVKNKVAPPFRQVEFDILYGLGISRESELIDLGVKNELVEKAGAWYSYNGERIGQGKENVRQFFLENPKIAGEI 318          
BLAST of DR908180 vs. ExPASy Swiss-Prot
Match: RECA_THICR (Protein recA OS=Thiomicrospira crunogena (strain XCL-2) GN=recA PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.692e-56
Identity = 107/209 (51.20%), Postives = 151/209 (72.25%), Query Frame = 2
Query:    2 LLAQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFTSKAGAMFTYNDRNF-RGKEAFKQFLVENESVREELVI 625
            L++QPD GEQAL + D+L+RSG            L PK E++G+MGD+HM +QARLMSQALRKL+ ++  + T++IFINQ+R K+    FG P E T GGNALKFY+SVRL+I+RIG +KKG+E +G++  VK+VKNK++PPFK  +FE+ +G+GISRE E+IDL +K K   KAGA ++Y  +   +GK+  +QFL +N  + E L +
Sbjct:  115 LVSQPDTGEQALEITDSLVRSGAVDIVIVDSVAALTPKAEIEGDMGDSHMGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVM-FGNP-ETTTGGNALKFYSSVRLDIRRIGAIKKGDEILGNETRVKVVKNKVSPPFKQVEFEILYGQGISREGEVIDLGVKEKLIEKAGAWYSYQGQKIGQGKDNVRQFLKDNPDIYETLQV 321          
BLAST of DR908180 vs. ExPASy Swiss-Prot
Match: RECA_RICCK (Protein recA OS=Rickettsia canadensis (strain McKiel) GN=recA PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.692e-56
Identity = 114/207 (55.07%), Postives = 148/207 (71.50%), Query Frame = 2
Query:    2 LLAQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFTSKAGAMFTYND-RNFRGKEAFKQFLVENESVREEL 619
            +++QPD GEQAL + DTLIRSG            LVPK E++GEMGDA MA QARLMSQALRKL+ S+S +  I +FINQ+R K+    FG P E T GGNALKFYASVR++I+RIG +K  EE IGSQ  VK+VKNK++PPFKTA F++ +G GIS+E EIIDL +K     K+G+ F+YN+ R  +G+E  KQ+L E+  +  E+
Sbjct:  115 IISQPDTGEQALEITDTLIRSGGIDMVIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKLTASISRTNCIAVFINQIRMKIGVM-FGSP-ETTTGGNALKFYASVRIDIRRIGSIKDKEEVIGSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYNNVRIGQGRENVKQYLKEHPQIANEI 319          
BLAST of DR908180 vs. ExPASy Swiss-Prot
Match: RECA_RHORT (Protein recA OS=Rhodospirillum rubrum (strain ATCC 11170 / NCIB 8255) GN=recA PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.692e-56
Identity = 112/207 (54.11%), Postives = 151/207 (72.95%), Query Frame = 2
Query:    2 LLAQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFTSKAGAMFTYND-RNFRGKEAFKQFLVENESVREEL 619
            L++QPD GEQAL + DTL+RSG            LVPK EL+G+MGD+H+ +QARLMSQALRKL+ ++S S T++IFINQ+R K+    FG P E T GGNALKFYASVRL+I+RIG VK  EE +G+Q  VK+VKNK+APPFK  +F++ +G+GIS+  E++DL +K     K+GA F+YN  R  +G+E  KQFL +N ++ EE+
Sbjct:  126 LVSQPDTGEQALEIADTLVRSGAIDVLVIDSVAALVPKAELEGDMGDSHVGLQARLMSQALRKLTGTVSRSNTLIIFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRLDIRRIGAVKDKEEVVGNQTRVKVVKNKVAPPFKVVEFDIMYGEGISKLGEMLDLGVKANIIEKSGAWFSYNSTRIGQGRENAKQFLRDNPAMAEEI 330          
BLAST of DR908180 vs. ExPASy Swiss-Prot
Match: RECA_IDILO (Protein recA OS=Idiomarina loihiensis GN=recA PE=3 SV=1)

HSP 1 Score: 216.853 bits (551), Expect = 8.692e-56
Identity = 109/207 (52.66%), Postives = 149/207 (71.98%), Query Frame = 2
Query:    2 LLAQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFTSKAGAMFTYN-DRNFRGKEAFKQFLVENESVREEL 619
            L++QPD GEQAL + D L+RSG            L PK E++GEMGD+H+ +QARLMSQALRKL+ ++  S T+ IFINQ+R K+    FG P E T GGNALKFY+SVRL+I+R G +K+G+E +G++  VK+VKNK+APPFK A F++ +GKGIS+E E+IDL +KHK   KAGA ++YN D+  +GK    +FL +N  + +EL
Sbjct:  114 LISQPDTGEQALEICDMLVRSGAVDIVIVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTSNIKKSNTMCIFINQIRMKIGVM-FGNP-ETTTGGNALKFYSSVRLDIRRTGALKEGDEVVGNETRVKVVKNKVAPPFKEAHFQILYGKGISKEGELIDLGVKHKMVDKAGAWYSYNGDKIGQGKANSMKFLQDNPKIADEL 318          
BLAST of DR908180 vs. ExPASy Swiss-Prot
Match: RECA_HALHL (Protein recA OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=recA PE=3 SV=1)

HSP 1 Score: 216.468 bits (550), Expect = 1.135e-55
Identity = 107/207 (51.69%), Postives = 150/207 (72.46%), Query Frame = 2
Query:    2 LLAQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFTSKAGAMFTYN-DRNFRGKEAFKQFLVENESVREEL 619
            L++QPD GEQAL + D L+RSG            L PK E++GEMGD+H+ +QARLMSQALRKL+ S+  S T+++FINQ+R K+    FG P E T GGNALKFY+SVR++I+R+G +KKG+E +G++  VK+VKNK+APPFK A+FE+ +G+GISRE EIID+ +   F  K+GA ++YN DR  +GK+  +QFL  N  +  ++
Sbjct:  116 LVSQPDTGEQALEIADMLVRSGGLDVVVVDSVAALTPKAEIEGEMGDSHVGLQARLMSQALRKLTGSIQRSNTLVVFINQIRMKIGVM-FGSP-ETTTGGNALKFYSSVRMDIRRLGAIKKGDEVLGNETRVKVVKNKMAPPFKQAEFEILYGEGISREGEIIDMGVAQGFVDKSGAWYSYNGDRIGQGKDNARQFLRNNPQIAADI 320          
BLAST of DR908180 vs. ExPASy Swiss-Prot
Match: RECA_RICFE (Protein recA OS=Rickettsia felis GN=recA PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.936e-55
Identity = 113/207 (54.59%), Postives = 148/207 (71.50%), Query Frame = 2
Query:    2 LLAQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFTSKAGAMFTYND-RNFRGKEAFKQFLVENESVREEL 619
            +++QPD GEQAL + DTLIRSG            LVPK E++GEMGDA MA QARLMSQALRKL+ S++ +  I +FINQ+R K+    FG P E T GGNALKFYASVR++I+RIG +K  EE IGSQ  VK+VKNK++PPFKTA F++ +G GIS+E EIIDL +K     K+G+ F+YN+ R  +G+E  KQ+L E+  +  E+
Sbjct:  115 IISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVM-FGNP-ETTTGGNALKFYASVRIDIRRIGSIKDKEEVIGSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIVEKSGSWFSYNNVRIGQGRENVKQYLKEHPQISNEI 319          
BLAST of DR908180 vs. ExPASy Swiss-Prot
Match: RECA_RICBR (Protein recA OS=Rickettsia bellii (strain RML369-C) GN=recA PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.936e-55
Identity = 113/207 (54.59%), Postives = 147/207 (71.01%), Query Frame = 2
Query:    2 LLAQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFTSKAGAMFTYND-RNFRGKEAFKQFLVENESVREEL 619
            +++QPD GEQAL + DTLIRSG            LVPK E++GEMGDA MA QARLMSQALRKL+ S++ +  I +FINQ+R K+    FG P E T GGNALKFYASVR++I+RIG +K  EE IGSQ  VK+VKNK++PPFKTA F++ +G GIS+E EIIDL +K     K+G+ F+YN  R  +G+E  KQ+L +N  +  E+
Sbjct:  115 IISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVM-FGSP-ETTTGGNALKFYASVRIDIRRIGSIKDKEEVIGSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIIEKSGSWFSYNSVRIGQGRENVKQYLKDNPKISNEI 319          
BLAST of DR908180 vs. ExPASy Swiss-Prot
Match: RECA_RICB8 (Protein recA OS=Rickettsia bellii (strain OSU 85-389) GN=recA PE=3 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 1.936e-55
Identity = 113/207 (54.59%), Postives = 147/207 (71.01%), Query Frame = 2
Query:    2 LLAQPDCGEQALSLVDTLIRSGXXXXXXXXXXXXLVPKGELDGEMGDAHMAMQARLMSQALRKLSHSLSLSQTILIFINQVRAKLSTFGFGGPTEVTCGGNALKFYASVRLNIKRIGLVKKGEETIGSQIAVKIVKNKLAPPFKTAQFELEFGKGISRESEIIDLALKHKFTSKAGAMFTYND-RNFRGKEAFKQFLVENESVREEL 619
            +++QPD GEQAL + DTLIRSG            LVPK E++GEMGDA MA QARLMSQALRKL+ S++ +  I +FINQ+R K+    FG P E T GGNALKFYASVR++I+RIG +K  EE IGSQ  VK+VKNK++PPFKTA F++ +G GIS+E EIIDL +K     K+G+ F+YN  R  +G+E  KQ+L +N  +  E+
Sbjct:  115 IISQPDTGEQALEIADTLIRSGGIDMIIIDSVAALVPKSEIEGEMGDAQMASQARLMSQALRKLTASINRTNCITVFINQIRMKIGVM-FGSP-ETTTGGNALKFYASVRIDIRRIGSIKDKEEVIGSQTKVKVVKNKVSPPFKTADFDIMYGSGISKEGEIIDLGVKLDIIEKSGSWFSYNSVRIGQGRENVKQYLKDNPKISNEI 319          
The following BLAST results are available for this feature:
BLAST of DR908180 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RECA3_ARATH3.063e-8576.92DNA repair protein recA homolog 3, mitochondrial O... [more]
RECA_COXBU4.609e-5753.62Protein recA OS=Coxiella burnetii GN=recA PE=3 SV=... [more]
RECA_THICR8.692e-5651.20Protein recA OS=Thiomicrospira crunogena (strain X... [more]
RECA_RICCK8.692e-5655.07Protein recA OS=Rickettsia canadensis (strain McKi... [more]
RECA_RHORT8.692e-5654.11Protein recA OS=Rhodospirillum rubrum (strain ATCC... [more]
RECA_IDILO8.692e-5652.66Protein recA OS=Idiomarina loihiensis GN=recA PE=3... [more]
RECA_HALHL1.135e-5551.69Protein recA OS=Halorhodospira halophila (strain D... [more]
RECA_RICFE1.936e-5554.59Protein recA OS=Rickettsia felis GN=recA PE=3 SV=1[more]
RECA_RICBR1.936e-5554.59Protein recA OS=Rickettsia bellii (strain RML369-C... [more]
RECA_RICB81.936e-5554.59Protein recA OS=Rickettsia bellii (strain OSU 85-3... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16308 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-40_E09 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908180 ID=DR908180; Name=DR908180; organism=Citrus sinensis; type=EST; length=703bp
GCTTCTTGCACAACCTGATTGTGGTGAACAAGCTCTCAGTCTTGTGGATA
CGCTGATCCGGAGTGGTTCTGTTGATGTAGTTGTTGTTGATAGTGTAGCT
GCTTTAGTGCCTAAAGGTGAACTTGATGGTGAGATGGGTGATGCTCATAT
GGCAATGCAAGCCAGACTAATGAGCCAGGCGCTTCGGAAACTGAGCCACT
CATTATCATTATCTCAGACTATTCTGATCTTCATTAATCAGGTGAGGGCA
AAACTCAGTACTTTTGGCTTCGGTGGCCCCACTGAAGTTACATGCGGCGG
CAATGCCTTAAAATTCTATGCTTCAGTTCGCTTAAATATCAAGAGAATAG
GGCTTGTCAAGAAGGGTGAAGAGACTATTGGAAGTCAAATTGCGGTGAAG
ATTGTTAAAAACAAACTTGCCCCTCCTTTTAAAACTGCCCAGTTTGAGCT
TGAGTTCGGCAAGGGCATTTCTCGAGAATCGGAGATCATAGACTTAGCTC
TAAAACACAAATTCACAAGTAAGGCTGGTGCAATGTTTACTTATAATGAT
CGGAATTTTCGTGGTAAGGAAGCCTTTAAACAGTTTCTGGTTGAGAATGA
GAGTGTGAGAGAAGAACTTGTGATCAGCTCAGGGAGAACTTGTTGTTGAC
CCAAGGAACCCAGACTGCAGTTACTGATGAAGACTCTACTGAAGAACTGT
TTC
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