DR908116

Overview
NameDR908116
Unique NameDR908116
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length719
Libraries
Library NameType
Citrus sinensis phloemcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: R15A5_ARATH (40S ribosomal protein S15a-5 OS=Arabidopsis thaliana GN=RPS15AE PE=2 SV=1)

HSP 1 Score: 224.942 bits (572), Expect = 3.283e-58
Identity = 107/129 (82.95%), Postives = 121/129 (93.80%), Query Frame = 3
Query:  108 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            MGRRILNDALR IVNAERRGKA+VEL+PISTVMSSFL IMK +GYIK+FQ+YDPHRVG+I V+L GRVNDC+ALTYRQDVRA+EIE YT R LPTRQWGYVVITTPDG+LDHEEA++RNVGGQVLG+F+
Sbjct:    1 MGRRILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVGRITVDLQGRVNDCKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: R15A2_ARATH (40S ribosomal protein S15a-2 OS=Arabidopsis thaliana GN=RPS15AB PE=2 SV=1)

HSP 1 Score: 218.779 bits (556), Expect = 2.353e-56
Identity = 102/129 (79.07%), Postives = 119/129 (92.25%), Query Frame = 3
Query:  108 MGRRILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            MGRRILNDALR IVNAE+RGKA+VEL+P+STVMSSFL IMK +GYIK+FQ++DPHRVG+I V+L GRVNDC+ALTYRQDV+A EI  YT R LPTRQWGY+VITTPDG+LDHEEA++RNVGGQVLG+FH
Sbjct:    1 MGRRILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVGRITVDLQGRVNDCKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFFH 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS15A_BRANA (40S ribosomal protein S15a OS=Brassica napus GN=RPS15A PE=2 SV=3)

HSP 1 Score: 144.821 bits (364), Expect = 4.318e-34
Identity = 68/125 (54.40%), Postives = 95/125 (76.00%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +LNDAL+++ NAE+RGK  V ++P S V+  FL +M+  GYI +F+  D HR GKI VEL GR+N C  ++ R DV  +EIEG+T R LP+RQ+GY+V+TT  G++DHEEA R+NVGG+VLG+F+
Sbjct:    6 VLNDALKSMFNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: R15A1_ARATH (40S ribosomal protein S15a-1 OS=Arabidopsis thaliana GN=RPS15AA PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 4.318e-34
Identity = 68/125 (54.40%), Postives = 95/125 (76.00%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +LNDAL+++ NAE+RGK  V ++P S V+  FL +M+  GYI +F+  D HR GKI VEL GR+N C  ++ R DV  +EIEG+T R LP+RQ+GY+V+TT  G++DHEEA R+NVGG+VLG+F+
Sbjct:    6 VLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS15A_DAUCA (40S ribosomal protein S15a OS=Daucus carota GN=RPS15A PE=2 SV=3)

HSP 1 Score: 142.124 bits (357), Expect = 2.799e-33
Identity = 67/125 (53.60%), Postives = 94/125 (75.20%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +LNDAL+++ NAE+RGK  V ++P S V+  FL +M+  GYI +F+  D HR GKI VEL GR+N C  ++ R DV  +EIE +T R LP+RQ+GY+V+TT  G++DHEEA R+NVGG+VLG+F+
Sbjct:    6 VLNDALKSMFNAEKRGKRQVMIRPSSKVVIKFLMVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEPWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: R15A4_ARATH (40S ribosomal protein S15a-4 OS=Arabidopsis thaliana GN=RPS15AD PE=2 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 3.656e-33
Identity = 66/125 (52.80%), Postives = 94/125 (75.20%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +LND L+++ NAE+RGK  V ++P S V+  FL +M+  GYI +F+  D HR GKI VEL GR+N C  ++ R DV  +EIEG+T R LP+RQ+G++V+TT  G++DHEEA R+NVGG+VLG+F+
Sbjct:    6 VLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSGKIVVELNGRLNKCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: R15A3_ARATH (40S ribosomal protein S15a-3 OS=Arabidopsis thaliana GN=RPS15AC PE=2 SV=2)

HSP 1 Score: 140.969 bits (354), Expect = 6.235e-33
Identity = 63/125 (50.40%), Postives = 95/125 (76.00%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYFH 494
            +LND L+++ NAE++GK  V ++P S V+  FL +M+  GYI +F+  D HR GKI VEL GR+N+C  ++ R D+  +EIEG+T + LP+RQ+GY+V+TT  G++DHEEA ++NVGG+VLG+F+
Sbjct:    6 VLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSGKIVVELNGRLNNCGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 130          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS15A_DROYA (40S ribosomal protein S15a OS=Drosophila yakuba GN=RpS15Aa PE=2 SV=3)

HSP 1 Score: 130.954 bits (328), Expect = 6.453e-30
Identity = 63/124 (50.81%), Postives = 88/124 (70.97%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 491
            +L DAL+ I NAE+RGK  V L+P S V+  FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV   +IE +T   LP+RQ+GYVV+TT  G++DHEEA R+++GG++LG+F
Sbjct:    6 VLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFF 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS15A_DROME (40S ribosomal protein S15Aa OS=Drosophila melanogaster GN=RpS15Aa PE=2 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 6.453e-30
Identity = 63/124 (50.81%), Postives = 88/124 (70.97%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 491
            +L DAL+ I NAE+RGK  V L+P S V+  FL +M   GYI +F++ D HR GKI V L GR+N C  ++ R DV   +IE +T   LP+RQ+GYVV+TT  G++DHEEA R+++GG++LG+F
Sbjct:    6 VLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVDDHRSGKIVVNLTGRLNKCGVISPRFDVPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFF 129          
BLAST of DR908116 vs. ExPASy Swiss-Prot
Match: RS15B_DROME (40S ribosomal protein S15Ab OS=Drosophila melanogaster GN=RpS15Ab PE=2 SV=3)

HSP 1 Score: 128.642 bits (322), Expect = 3.202e-29
Identity = 61/124 (49.19%), Postives = 87/124 (70.16%), Query Frame = 3
Query:  120 ILNDALRAIVNAERRGKATVELQPISTVMSSFLNIMKYRGYIKDFQLYDPHRVGKIKVELLGRVNDCRALTYRQDVRAREIEGYTVRALPTRQWGYVVITTPDGVLDHEEALRRNVGGQVLGYF 491
            +L DAL+ I NAE+RGK  V L+P S V+  FL +M   GYI +F++ + HR GKI V L GR+N C  ++ R D    +IE +T   LP+RQ+GYVV+TT  G++DHEEA R+++GG++LG+F
Sbjct:    6 VLADALKCINNAEKRGKRQVLLRPCSKVIIKFLTVMMKHGYIGEFEIVEDHRAGKIVVNLTGRLNKCGVISPRFDAPINDIEKWTNNLLPSRQFGYVVLTTSGGIMDHEEARRKHLGGKILGFF 129          
The following BLAST results are available for this feature:
BLAST of DR908116 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 98
Match NameE-valueIdentityDescription
R15A5_ARATH3.283e-5882.9540S ribosomal protein S15a-5 OS=Arabidopsis thalia... [more]
R15A2_ARATH2.353e-5679.0740S ribosomal protein S15a-2 OS=Arabidopsis thalia... [more]
RS15A_BRANA4.318e-3454.4040S ribosomal protein S15a OS=Brassica napus GN=RP... [more]
R15A1_ARATH4.318e-3454.4040S ribosomal protein S15a-1 OS=Arabidopsis thalia... [more]
RS15A_DAUCA2.799e-3353.6040S ribosomal protein S15a OS=Daucus carota GN=RPS... [more]
R15A4_ARATH3.656e-3352.8040S ribosomal protein S15a-4 OS=Arabidopsis thalia... [more]
R15A3_ARATH6.235e-3350.4040S ribosomal protein S15a-3 OS=Arabidopsis thalia... [more]
RS15A_DROYA6.453e-3050.8140S ribosomal protein S15a OS=Drosophila yakuba GN... [more]
RS15A_DROME6.453e-3050.8140S ribosomal protein S15Aa OS=Drosophila melanoga... [more]
RS15B_DROME3.202e-2949.1940S ribosomal protein S15Ab OS=Drosophila melanoga... [more]

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Properties
Property NameValue
Genbank descriptionUSDA-FP_16244 Citrus sinensis phloem Citrus sinensis cDNA clone VPE-35_E12 5, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>DR908116 ID=DR908116; Name=DR908116; organism=Citrus sinensis; type=EST; length=719bp
GCAATTTGGTTTAAATATCAGAAGAACTGGCTTTCCTTTGTCGAAAACCC
TTTACCTGAGACGGGCGTGAAAGCCTTGCGGTGTTGCTATTTGCAGTGCA
GACGGTGATGGGGAGGAGGATATTAAATGATGCTTTGAGAGCAATAGTGA
ATGCAGAGAGGAGGGGCAAAGCTACTGTTGAGTTGCAGCCAATCTCTACT
GTCATGTCTTCTTTTCTTAATATCATGAAATATCGAGGATACATCAAGGA
TTTTCAGTTGTATGACCCACATAGGGTGGGCAAGATCAAAGTTGAACTAC
TAGGCAGGGTAAATGATTGTCGAGCTCTCACTTATAGGCAGGACGTCAGG
GCAAGGGAAATTGAAGGGTACACGGTGCGTGCTCTTCCAACTAGACAGTG
GGGCTATGTTGTGATAACAACTCCGGATGGTGTTTTGGACCATGAAGAGG
CCCTGAGGCGGAATGTGGGTGGCCAAGTTCTCGGTTATTTTCATTAGACA
TCTTTGCCATCCAAACAATTTGGAAAGGAAGGAAAGAGTTCTTTAACGGA
GTTGCAGCCTGCAAGAATGTGTTAAAACTTTTAAGTAGAGACCATTTCAA
TTTTGTAGTATTTCAGCTGAATGATAGAACAGGAGGTGAAACAACCTCTC
TTCATGAAGTGTTTTGTATCTTCATGGACCAGTTGTGATTTATTGTAATT
TAAAAGTGCAGCATTGTTT
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