EY680102

Overview
NameEY680102
Unique NameEY680102
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length849
Libraries
Library NameType
Sweet orange leaf, young greenhouse plantcdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY680102_ssr587 microsatellite EY680102_ssr587:587..598. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY680102 vs. ExPASy Swiss-Prot
Match: COBRA_ARATH (Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 SV=1)

HSP 1 Score: 140.584 bits (353), Expect = 1.072e-32
Identity = 64/106 (60.38%), Postives = 77/106 (72.64%), Query Frame = 3
Query:    3 AKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALPEINNSSSTGSRD*AVCCXXXXXXRYQC 320
            AK+ +PTKF+T+D RR TQAMMTWN+TCTYSQFLAQ+TPTCCVSLSSF NET V CPTCACGCQNN TESG+C+    P + +  S  ++   V        R+ C
Sbjct:  193 AKIVRPTKFVTTDTRRTTQAMMTWNITCTYSQFLAQRTPTCCVSLSSFYNETIVGCPTCACGCQNNRTESGACLDPDTPHLASVVSPPTKKGTVLPPLVQCTRHMC 298          
BLAST of EY680102 vs. ExPASy Swiss-Prot
Match: COBL3_ORYSJ (COBRA-like protein 3 OS=Oryza sativa subsp. japonica GN=BC1L4 PE=2 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 1.712e-30
Identity = 57/84 (67.86%), Postives = 68/84 (80.95%), Query Frame = 3
Query:    3 AKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALPEINNS 254
            A + +PTKF T D RR TQA+MTWNVTCTYSQFLAQKTP+CCVSLSSF N+T V+CPTC+CGCQNNGT  GSC+    P + ++
Sbjct:  193 AMIVRPTKFFTGDGRRATQALMTWNVTCTYSQFLAQKTPSCCVSLSSFYNDTIVNCPTCSCGCQNNGTSPGSCVNENSPYLQSA 276          
BLAST of EY680102 vs. ExPASy Swiss-Prot
Match: COBL1_ARATH (COBRA-like protein 1 OS=Arabidopsis thaliana GN=COBL1 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 7.193e-29
Identity = 58/81 (71.60%), Postives = 69/81 (85.19%), Query Frame = 3
Query:    3 AKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALPEI 245
            AK+ KPT+FI +DKRRVTQA+MTWNVTCTYSQFLAQKTPTCCVSLSSF N+T VSCPTC+CGC+N  ++ G+C+    P I
Sbjct:  190 AKIVKPTRFIGTDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNKTIVSCPTCSCGCRNT-SQPGNCVDPKGPRI 269          
BLAST of EY680102 vs. ExPASy Swiss-Prot
Match: COBL1_ORYSJ (COBRA-like protein 1 OS=Oryza sativa subsp. japonica GN=BC1L6 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 3.947e-27
Identity = 55/91 (60.44%), Postives = 71/91 (78.02%), Query Frame = 3
Query:    3 AKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALPEINNSSSTGSRD 275
            AKV +PTKF + D RR TQA MTWNVTCTYSQ +AQ++PTCCVSLSSF N+T V+CPTC+CGCQNN  + GSC++   P + +  +T ++D
Sbjct:  185 AKVVRPTKFFSQDGRRTTQAHMTWNVTCTYSQIVAQRSPTCCVSLSSFYNDTIVNCPTCSCGCQNN--KPGSCVEGNSPYLASVVNTHNKD 273          
BLAST of EY680102 vs. ExPASy Swiss-Prot
Match: COBL2_ARATH (COBRA-like protein 2 OS=Arabidopsis thaliana GN=COBL2 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.500e-26
Identity = 50/74 (67.57%), Postives = 68/74 (91.89%), Query Frame = 3
Query:    3 AKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCI 224
            AK+ KP++FI++DKRR TQ+++TWN+TCTYSQFLA+KTPTCCVSLS+F NET V CPTC+CGCQN+ +++G+C+
Sbjct:  185 AKLVKPSRFISADKRRKTQSLLTWNITCTYSQFLARKTPTCCVSLSAFYNETIVPCPTCSCGCQNS-SQAGTCV 257          
BLAST of EY680102 vs. ExPASy Swiss-Prot
Match: COBL4_ORYSJ (COBRA-like protein 4 OS=Oryza sativa subsp. japonica GN=BC1L9 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 2.558e-26
Identity = 48/83 (57.83%), Postives = 65/83 (78.31%), Query Frame = 3
Query:    3 AKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALPEINN 251
            A + KP++F++ D RR TQ +MTWNV CTYSQFLAQK P+CCVSLSSF+N+ TV CPTC+CGC+N  + +G C+K   P++ +
Sbjct:  186 AMIVKPSRFLSPDGRRATQVLMTWNVICTYSQFLAQKVPSCCVSLSSFDNDKTVDCPTCSCGCRNEKSTTGKCVKKNAPDLQS 268          
BLAST of EY680102 vs. ExPASy Swiss-Prot
Match: COBL2_ORYSJ (COBRA-like protein 2 OS=Oryza sativa subsp. japonica GN=BC1L2 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 1.404e-24
Identity = 56/98 (57.14%), Postives = 67/98 (68.37%), Query Frame = 3
Query:    6 KVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIKNALP---EINNSSSTGSRD*AVCC 290
            +V  PT+FI+ D RR TQA +TWNVTCTYSQF+AQ+ PTCCVSLSSF NET V+CP CACGCQN   + GSC++   P    + N    GS    V C
Sbjct:  188 EVKPPTRFISLDGRRTTQAHVTWNVTCTYSQFVAQRAPTCCVSLSSFYNETIVNCPKCACGCQNK--KPGSCVEGNSPYLASVVNGPGKGSLTPLVQC 283          
BLAST of EY680102 vs. ExPASy Swiss-Prot
Match: COBL4_ARATH (COBRA-like protein 4 OS=Arabidopsis thaliana GN=COBL4 PE=2 SV=2)

HSP 1 Score: 107.071 bits (266), Expect = 1.314e-22
Identity = 48/75 (64.00%), Postives = 58/75 (77.33%), Query Frame = 3
Query:    3 AKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTESGSCIK 227
            AK+   T F+T+DKRR TQA+MTWNVTCTYSQFLA+K P+CCVS SSF N+T   CP+CACGC+N      SC+K
Sbjct:  177 AKIVPSTVFLTTDKRRKTQALMTWNVTCTYSQFLARKHPSCCVSFSSFYNDTITPCPSCACGCEN----KKSCVK 247          
BLAST of EY680102 vs. ExPASy Swiss-Prot
Match: COBL6_ORYSJ (COBRA-like protein 6 OS=Oryza sativa subsp. japonica GN=BC1L7 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 5.167e-19
Identity = 42/63 (66.67%), Postives = 49/63 (77.78%), Query Frame = 3
Query:    3 AKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGC 191
            A+V   T F+T+D+RR TQA+MTWNVTCTYSQ LA K P+CCVS SSF N+T V C  CACGC
Sbjct:  178 ARVVPSTVFLTADRRRKTQALMTWNVTCTYSQHLASKYPSCCVSFSSFYNDTIVPCAKCACGC 240          
BLAST of EY680102 vs. ExPASy Swiss-Prot
Match: COBL5_ORYSJ (COBRA-like protein 5 OS=Oryza sativa subsp. japonica GN=BC1 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.461e-18
Identity = 52/114 (45.61%), Postives = 61/114 (53.51%), Query Frame = 3
Query:    3 AKVGKPTKFITSDKRRVTQAMMTWNVTCTYSQFLAQKTPTCCVSLSSFNNETTVSCPTCACGCQNNGTE-SGSCIKNALP----EINNSSSTGSRD*AVCCXXXXXXRYQCAGV 329
            A +   T ++T D+RR TQA+MTW VTCTYSQ LA + PTCCVS SSF N T V C  CACGC ++G   +G   KNA         NS   G       C      R   AGV
Sbjct:  179 ATIVPSTVYLTPDRRRRTQALMTWTVTCTYSQQLASRYPTCCVSFSSFYNSTIVPCARCACGCGHDGYRGNGGGGKNARAGDGRSRRNSGGGGGHSGGTECIMGDSKRALSAGV 292          
The following BLAST results are available for this feature:
BLAST of EY680102 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 13
Match NameE-valueIdentityDescription
COBRA_ARATH1.072e-3260.38Protein COBRA OS=Arabidopsis thaliana GN=COB PE=2 ... [more]
COBL3_ORYSJ1.712e-3067.86COBRA-like protein 3 OS=Oryza sativa subsp. japoni... [more]
COBL1_ARATH7.193e-2971.60COBRA-like protein 1 OS=Arabidopsis thaliana GN=CO... [more]
COBL1_ORYSJ3.947e-2760.44COBRA-like protein 1 OS=Oryza sativa subsp. japoni... [more]
COBL2_ARATH1.500e-2667.57COBRA-like protein 2 OS=Arabidopsis thaliana GN=CO... [more]
COBL4_ORYSJ2.558e-2657.83COBRA-like protein 4 OS=Oryza sativa subsp. japoni... [more]
COBL2_ORYSJ1.404e-2457.14COBRA-like protein 2 OS=Oryza sativa subsp. japoni... [more]
COBL4_ARATH1.314e-2264.00COBRA-like protein 4 OS=Arabidopsis thaliana GN=CO... [more]
COBL6_ORYSJ5.167e-1966.67COBRA-like protein 6 OS=Oryza sativa subsp. japoni... [more]
COBL5_ORYSJ7.461e-1845.61COBRA-like protein 5 OS=Oryza sativa subsp. japoni... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C1-650-007-D12-CT.F Sweet orange leaf, young greenhouse plant Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY680102 ID=EY680102; Name=EY680102; organism=Citrus sinensis; type=EST; length=849bp
CTGCAAAAGTTGGTAAACCAACTAAATTCATTACGTCAGATAAGAGGAGA
GTCACACAAGCTATGATGACCTGGAATGTCACATGCACATATTCACAGTT
CTTGGCTCAAAAGACACCCACCTGTTGTGTTTCTCTCTCTTCCTTCAACA
ATGAAACAACAGTAAGCTGCCCAACGTGTGCTTGTGGCTGTCAAAACAAT
GGAACAGAATCTGGGAGTTGCATAAAAAATGCATTGCCTGAAATCAACAA
CAGCAGCAGCACGGGGAGCCGGGATTGAGCCGTATGCTGCAGTAGCAGTA
GCAGTAGCAGGTATCAATGTGCTGGTGTCATACAATGAATTAGACGGAAC
CCCTCTTAATATCTCATCTTTCTCCACTGCAAGACCCTGTTATTGCCTTA
GAACCAATGTCCAAAAGTGATCCAATAGAATTTTCTCCATTAATTTTTTT
AATTTTAAAATAAAACCAATAACCTTGGCAACCAGTTCAGTGAGCCTGTT
TGGGGGAGCTTCAGCATTTAAAGGCGTCATTGTGGCTGAAGCAACAGCAT
TTGCAGCCTACAAAAAATTATCAATTTTGTTTTTCAGTGTGTGTGTGTAT
ACTAAAAATTTCGATAAAAGGAAAACAAGGGGGTTGCCTGAAAAAATAAA
TTGTTTAAAATTAAGTAAATTTGGATTTTATAAACAATTATTACTTTAAC
AACTGTTTATTAAAAAAAAAAAAAAAAAGGGGGGCCCCTCCAAAAAAAAC
AAAGCTTACTTACACCTGCCATGCAAATTCCAAACTATTATAAAATTGTA
CCCCTAAAATTTAATCACCGAGGGCGCCCTTTTTAAAAACCATAAAGAA
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